prot_H-paniculata_contig55570.13059.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig55570.13059.1
Unique Name	prot_H-paniculata_contig55570.13059.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	115

Homology

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0K192_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K192_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.790e-64
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            MSFIIGT LP+DLILIYS+A+IYGIGLY+S+ IC K GFGLDSRGKDVNY QAK LE+ISENFGL+LGQDLRRFEKE+IH+LCRI SYRGLRHR+GLPVRGQRTHTNSKRRLF 
Sbjct:    1 MSFIIGTLLPSDLILIYSYAYIYGIGLYHSRIICKKVGFGLDSRGKDVNYTQAKALEKISENFGLVLGQDLRRFEKERIHRLCRIMSYRGLRHRKGLPVRGQRTHTNSKRRLFF 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 151 bits (382), Expect = 2.740e-45
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRR 111
            M +IIGTP+P + +L+ S +HIYGIGLY SK +C KAGFG DSRGKDV++ + KILE ++E   L LG DLRRF+ +KI +LC +S+YRG RHR+GLPVRGQRTHTNSK+R
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTYRGSRHRKGLPVRGQRTHTNSKKR 111

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A2R4QQ75_9PHAE (Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ75_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.460e-43
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRL 112
            M FIIGTP+P D IL+ S + IYGIGL  SK +C KAGFG D RGK+V++ Q KIL  ++EN  L LG DLRRF  +KI +LC +SSYRGLRH++GLP RGQRTHTN+K+RL
Sbjct:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPARGQRTHTNAKKRL 112

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.060e-42
Identity = 67/114 (58.77%), Postives = 89/114 (78.07%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M +IIGT +P D +L+ S AHIYG+GL  SK +C KAGFG DSRG+DV++ + K++E ++E   L LG DLRRF+ +KI +LC +S+YRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTYRGSRHRKGLPVRGQRTHTNAKKRPLL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 8.180e-42
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M +IIGT +P D +L+ S +HIYG+G   SK +C KAGFG DSRG D+ +++ KILE  +E   L LG DLRRF+  KI +LC IS+YRGLRH++GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTYRGLRHKKGLPVRGQRTHTNAKKRPSL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 142 bits (358), Expect = 1.160e-41
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M FIIGTP+P D +L+ S +HIYGIGL  SK +C KAGFG DSRG  V +++ + LE ++E   L LG DLRRF+ +KI +LC +S+YRGLRHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAKKRPSL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.160e-41
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M FIIGT +P D +L+ S AHIYGIGL  SK +C KAGFG DSRG++V + + K LE ++E   L LG DLRRF+ +KI +LC IS+YRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTYRGSRHRKGLPVRGQRTHTNAKKRPLL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FD36_9PHAE (Ribosomal protein S13 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD36_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M FI+G  +P   IL  S AHIYGIGL  SK +C KAGFG DSRG D+N+ ++++LE ++E   L LG DLRRFEK+ I +LC IS+YRGLRH++GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIVGKSIPEATILAQSVAHIYGIGLCQSKILCKKAGFGSDSRGSDLNFTKSRVLEELAEATPLPLGPDLRRFEKDNIRRLCIISAYRGLRHKKGLPVRGQRTHTNAKKRPHL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FC85_9PHAE (Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC85_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M FIIGT +P D +L+ S AHIYGIGL  SK +C KAGFG DSRG  V + + K LE ++E+  L LG DLRRF+ +KI +LC +S+YRG+RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKVLVQSIAHIYGIGLSQSKILCKKAGFGSDSRGIHVTFSKGKNLENLAEDTPLALGADLRRFQNDKIRRLCVLSAYRGVRHRKGLPVRGQRTHTNAKKRPLL 114

[Close]

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 0

Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 114
            M FIIGT +P D IL+ S +HIYG+GL  SK +C KAGFG DSRG  V + + +ILE ++E   L LG DLRRF+ +KI +LC +SSYRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSYRGSRHRKGLPVRGQRTHTNAKKRALL 114

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8F0K192_9PHAE	5.790e-64	84.21	Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ...	[more]
A0A0U1XCC6_SCYLO	2.740e-45	63.96	Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar...	[more]
A0A2R4QQ75_9PHAE	2.460e-43	63.39	Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 Rep...	[more]
A0A0U1XDT6_9PHAE	4.060e-42	58.77	Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax...	[more]
E6ZES0_ECTSI	8.180e-42	58.77	Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos...	[more]
D0IPU7_SACAN	1.160e-41	60.53	Ribosomal protein S13 n=45 Tax=Laminariales TaxID=...	[more]
Q2TUF4_9PHAE	1.160e-41	61.40	Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31...	[more]
A0A8F0FD36_9PHAE	3.320e-41	60.53	Ribosomal protein S13 n=1 Tax=Analipus japonicus T...	[more]
A0A8F0FC85_9PHAE	3.320e-41	60.53	Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A8F0FDF8_9PHAE	3.320e-41	60.53	Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.50		coord: 1..68 e-value: 3.4E-10 score: 41.9
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..110
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 30..114
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 13..30
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..113 e-value: 5.2E-32 score: 108.5
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 4..110 e-value: 1.0E-18 score: 67.9
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 4..111 score: 28.269
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 69..112 e-value: 8.3E-16 score: 59.6
IPR019980	Ribosomal protein S13, bacterial-type	PANTHER	PTHR10871:SF1	37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL	coord: 1..110
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 89..102
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 3..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig55570	contig	H-paniculata_contig55570:238..582 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig55570.13059.1	mRNA_H-paniculata_contig55570.13059.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig55570 238..582 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig55570.13059.1 ID=prot_H-paniculata_contig55570.13059.1|Name=mRNA_H-paniculata_contig55570.13059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNY
VQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVR
GQRTHTNSKRRLFL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001892	Ribosomal_S13
IPR027437	30s_Rbsml_prot_S13_C
IPR019980	Ribosomal_S13_bac-type
IPR018269	Ribosomal_S13_CS
IPR010979	Ribosomal_S13-like_H2TH