mRNA_H-paniculata_contig55570.13059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55570.13059.1
Unique NamemRNA_H-paniculata_contig55570.13059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0K192_9PHAE (Ribosomal protein S13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K192_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 5.790e-64
Identity = 96/114 (84.21%), Postives = 106/114 (92.98%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            MSFIIGT LP+DLILIYS+A+IYGIGLY+S+ IC K GFGLDSRGKDVNY QAK LE+ISENFGL+LGQDLRRFEKE+IH+LCRI SYRGLRHR+GLPVRGQRTHTNSKRRLF 
Sbjct:    1 MSFIIGTLLPSDLILIYSYAYIYGIGLYHSRIICKKVGFGLDSRGKDVNYTQAKALEKISENFGLVLGQDLRRFEKERIHRLCRIMSYRGLRHRKGLPVRGQRTHTNSKRRLFF 114
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BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A0U1XCC6_SCYLO (Ribosomal protein S13 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCC6_SCYLO)

HSP 1 Score: 151 bits (382), Expect = 2.740e-45
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRR 333
            M +IIGTP+P + +L+ S +HIYGIGLY SK +C KAGFG DSRGKDV++ + KILE ++E   L LG DLRRF+ +KI +LC +S+YRG RHR+GLPVRGQRTHTNSK+R
Sbjct:    1 MPYIIGTPIPEEKVLVQSLSHIYGIGLYQSKILCKKAGFGSDSRGKDVSFPKGKILENLAEGTSLPLGADLRRFQNDKIRRLCALSTYRGSRHRKGLPVRGQRTHTNSKKR 111
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BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A2R4QQ75_9PHAE (Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 RepID=A0A2R4QQ75_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.460e-43
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRL 336
            M FIIGTP+P D IL+ S + IYGIGL  SK +C KAGFG D RGK+V++ Q KIL  ++EN  L LG DLRRF  +KI +LC +SSYRGLRH++GLP RGQRTHTN+K+RL
Sbjct:    1 MPFIIGTPIPEDKILVQSVSQIYGIGLSQSKILCRKAGFGQDCRGKNVSFSQGKILGNLAENTSLFLGSDLRRFHNDKIRRLCLMSSYRGLRHKKGLPARGQRTHTNAKKRL 112
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BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A0U1XDT6_9PHAE (Ribosomal protein S13 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A0U1XDT6_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 4.060e-42
Identity = 67/114 (58.77%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M +IIGT +P D +L+ S AHIYG+GL  SK +C KAGFG DSRG+DV++ + K++E ++E   L LG DLRRF+ +KI +LC +S+YRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPYIIGTSIPEDKVLVQSIAHIYGLGLSQSKNLCKKAGFGSDSRGRDVSFFKGKMIENLAEATPLPLGADLRRFQNDKIRRLCVLSTYRGSRHRKGLPVRGQRTHTNAKKRPLL 114
[Close]
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: E6ZES0_ECTSI (Ribosomal protein S13 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES0_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 8.180e-42
Identity = 67/114 (58.77%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M +IIGT +P D +L+ S +HIYG+G   SK +C KAGFG DSRG D+ +++ KILE  +E   L LG DLRRF+  KI +LC IS+YRGLRH++GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPYIIGTSIPEDKVLVQSLSHIYGLGSSQSKNLCKKAGFGSDSRGSDITFLKGKILENFAEATSLPLGSDLRRFQNNKIRRLCSISTYRGLRHKKGLPVRGQRTHTNAKKRPSL 114
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BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: D0IPU7_SACAN (Ribosomal protein S13 n=45 Tax=Laminariales TaxID=2886 RepID=D0IPU7_SACAN)

HSP 1 Score: 142 bits (358), Expect = 1.160e-41
Identity = 69/114 (60.53%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M FIIGTP+P D +L+ S +HIYGIGL  SK +C KAGFG DSRG  V +++ + LE ++E   L LG DLRRF+ +KI +LC +S+YRGLRHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTPIPEDKVLVQSISHIYGIGLSQSKILCKKAGFGSDSRGSHVTFLKGRNLENLAEATPLPLGADLRRFKNDKIRRLCVLSTYRGLRHRKGLPVRGQRTHTNAKKRPSL 114
[Close]
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: Q2TUF4_9PHAE (Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUF4_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.160e-41
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M FIIGT +P D +L+ S AHIYGIGL  SK +C KAGFG DSRG++V + + K LE ++E   L LG DLRRF+ +KI +LC IS+YRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKVLVQSVAHIYGIGLSQSKILCKKAGFGSDSRGRNVTFSKGKNLENLAEAIPLPLGPDLRRFQNDKIRRLCLISTYRGSRHRKGLPVRGQRTHTNAKKRPLL 114
[Close]
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FD36_9PHAE (Ribosomal protein S13 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0FD36_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M FI+G  +P   IL  S AHIYGIGL  SK +C KAGFG DSRG D+N+ ++++LE ++E   L LG DLRRFEK+ I +LC IS+YRGLRH++GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIVGKSIPEATILAQSVAHIYGIGLCQSKILCKKAGFGSDSRGSDLNFTKSRVLEELAEATPLPLGPDLRRFEKDNIRRLCIISAYRGLRHKKGLPVRGQRTHTNAKKRPHL 114
[Close]
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FC85_9PHAE (Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC85_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M FIIGT +P D +L+ S AHIYGIGL  SK +C KAGFG DSRG  V + + K LE ++E+  L LG DLRRF+ +KI +LC +S+YRG+RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKVLVQSIAHIYGIGLSQSKILCKKAGFGSDSRGIHVTFSKGKNLENLAEDTPLALGADLRRFQNDKIRRLCVLSAYRGVRHRKGLPVRGQRTHTNAKKRPLL 114
[Close]
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Match: A0A8F0FDF8_9PHAE (Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0FDF8_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.320e-41
Identity = 69/114 (60.53%), Postives = 86/114 (75.44%), Query Frame = 1 
Query:    1 MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNYVQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVRGQRTHTNSKRRLFL 342
            M FIIGT +P D IL+ S +HIYG+GL  SK +C KAGFG DSRG  V + + +ILE ++E   L LG DLRRF+ +KI +LC +SSYRG RHR+GLPVRGQRTHTN+K+R  L
Sbjct:    1 MPFIIGTSIPEDKILVQSVSHIYGLGLSQSKVLCKKAGFGSDSRGSHVTFSKGRILENLAEATPLPLGADLRRFQNDKIRRLCVLSSYRGSRHRKGLPVRGQRTHTNAKKRALL 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55570.13059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K192_9PHAE5.790e-6484.21Ribosomal protein S13 n=1 Tax=Protohalopteris sp. ... [more]
A0A0U1XCC6_SCYLO2.740e-4563.96Ribosomal protein S13 n=1 Tax=Scytosiphon lomentar... [more]
A0A2R4QQ75_9PHAE2.460e-4363.39Ribosomal protein S13 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A0U1XDT6_9PHAE4.060e-4258.77Ribosomal protein S13 n=2 Tax=Scytosiphonaceae Tax... [more]
E6ZES0_ECTSI8.180e-4258.77Ribosomal protein S13 n=2 Tax=Ectocarpus siliculos... [more]
D0IPU7_SACAN1.160e-4160.53Ribosomal protein S13 n=45 Tax=Laminariales TaxID=... [more]
Q2TUF4_9PHAE1.160e-4161.40Ribosomal protein S13 n=2 Tax=Desmarestia TaxID=31... [more]
A0A8F0FD36_9PHAE3.320e-4160.53Ribosomal protein S13 n=1 Tax=Analipus japonicus T... [more]
A0A8F0FC85_9PHAE3.320e-4160.53Ribosomal protein S13 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0FDF8_9PHAE3.320e-4160.53Ribosomal protein S13 n=1 Tax=Pseudochorda nagaii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55570contigH-paniculata_contig55570:238..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.3
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog1123309.AQYB01000023_gene876
Preferred namerpsM
KEGG koko:K02952
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071840,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
EggNOG OGs1V3JH@1239,4HGX6@91061,COG0099@1,COG0099@2
COG Functional cat.J
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size345
Cds size345
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.8216279-CDS-H-paniculata_contig55570:237..5821622930585.8216279-CDS-H-paniculata_contig55570:237..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55570 238..582 -
1691481359.8254805-CDS-H-paniculata_contig55570:237..5821691481359.8254805-CDS-H-paniculata_contig55570:237..582Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55570 238..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55570.13059.1prot_H-paniculata_contig55570.13059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55570 238..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55570.13059.1

>prot_H-paniculata_contig55570.13059.1 ID=prot_H-paniculata_contig55570.13059.1|Name=mRNA_H-paniculata_contig55570.13059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MSFIIGTPLPNDLILIYSFAHIYGIGLYYSKKICNKAGFGLDSRGKDVNY
VQAKILERISENFGLILGQDLRRFEKEKIHKLCRISSYRGLRHRRGLPVR
GQRTHTNSKRRLFL*
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mRNA from alignment at H-paniculata_contig55570:238..582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55570.13059.1 ID=mRNA_H-paniculata_contig55570.13059.1|Name=mRNA_H-paniculata_contig55570.13059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig55570:238..582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTTTATTATCGGTACACCACTACCAAATGATTTAATTTTAATATA
TTCTTTTGCCCATATTTATGGTATTGGTTTATATTATTCAAAAAAAATAT
GTAATAAAGCAGGCTTTGGCTTAGATTCTAGGGGAAAAGATGTTAATTAT
GTACAAGCAAAAATTTTAGAAAGAATTTCTGAAAATTTTGGTTTAATTTT
GGGTCAAGATCTTCGTCGTTTTGAAAAAGAAAAAATCCATAAATTATGTC
GTATATCATCTTATCGAGGTTTACGCCACCGTAGAGGTTTACCTGTAAGG
GGTCAGCGTACACATACAAATTCTAAACGTAGGTTATTTTTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55570:238..582-

>mRNA_H-paniculata_contig55570.13059.1 ID=mRNA_H-paniculata_contig55570.13059.1|Name=mRNA_H-paniculata_contig55570.13059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig55570:238..582- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTTTATTATCGGTACACCACTACCAAATGATTTAATTTTAATATA
TTCTTTTGCCCATATTTATGGTATTGGTTTATATTATTCAAAAAAAATAT
GTAATAAAGCAGGCTTTGGCTTAGATTCTAGGGGAAAAGATGTTAATTAT
GTACAAGCAAAAATTTTAGAAAGAATTTCTGAAAATTTTGGTTTAATTTT
GGGTCAAGATCTTCGTCGTTTTGAAAAAGAAAAAATCCATAAATTATGTC
GTATATCATCTTATCGAGGTTTACGCCACCGTAGAGGTTTACCTGTAAGG
GGTCAGCGTACACATACAAATTCTAAACGTAGGTTATTTTTATAAATGTC
TTTTATTATCGGTACACCACTACCAAATGATTTAATTTTAATATATTCTT
TTGCCCATATTTATGGTATTGGTTTATATTATTCAAAAAAAATATGTAAT
AAAGCAGGCTTTGGCTTAGATTCTAGGGGAAAAGATGTTAATTATGTACA
AGCAAAAATTTTAGAAAGAATTTCTGAAAATTTTGGTTTAATTTTGGGTC
AAGATCTTCGTCGTTTTGAAAAAGAAAAAATCCATAAATTATGTCGTATA
TCATCTTATCGAGGTTTACGCCACCGTAGAGGTTTACCTGTAAGGGGTCA
GCGTACACATACAAATTCTAAACGTAGGTTATTTTTATAA
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