mRNA_H-paniculata_contig5554.13055.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5554.13055.1
Unique NamemRNA_H-paniculata_contig5554.13055.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.100e-19
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGS 297
            H A     W  E+  E+F D MG  V P DVFL  TVDQG NV NA  +LG+PV+ CN +R+NTAV+WALGIAG+
Sbjct:  329 HTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGN 403          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.100e-19
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTST 306
            H A   K W   +  E+F D+MG +V   DVFL  TVDQG NV NA  +LG+PV+ CN +R+N+AV+WALGIAGS +T
Sbjct:  140 HTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATT 217          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.600e-19
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTST 306
            H A   K W   +  E+F D++G +V P DVFL  TVDQG N+ NA  +LG+PV+ CN +R+N+AV+WALGIAG   T
Sbjct:  137 HTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCART 214          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.270e-18
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  103 NEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTSTSTDIRPNG 330
            +++  E+FG  MG +V P+DVFL  TVDQG NV NA  +LG+ V+ CN +R+N+AV+WALGIAGS +T  + +  G
Sbjct:    5 SQLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGG 80          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.290e-18
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTST 306
            H A   K W   +  E+  D+MG +V   DVFL  TVDQG NV NA  +LG+PV+ CN +R+N+AV+WALGIAGS +T
Sbjct:  140 HTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTT 217          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.500e-18
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAG 294
            H A   + W  ++  E+F   MG +V P+DVFL  TVDQG N+ NA  +LG+ V+ CN +RLNTAV+WALGIAG
Sbjct:  136 HTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAG 209          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.600e-18
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   73 HGARHFKRWTNEVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAG 294
            H A   + W  ++  E+F   MG +V P+DVFL  TVDQG N+ NA  +LG+ V+ CN +RLNTAV+WALGIAG
Sbjct:  331 HTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAG 404          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.450e-17
Identity = 41/67 (61.19%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  106 EVVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTST 306
            ++ TEFF DMMG  V P DVFL  TVDQG NV NA  +L + VL CNA+RLN+  MWALGI GS  T
Sbjct:    2 QLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRT 68          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.970e-17
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  109 VVTEFFGDMMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIAGSTST 306
            + TEFF DMMG  V P DVFL  TVDQG NV NA  +L + VL CNA+RLN+  MWALGI GS  T
Sbjct:  331 LTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRT 396          
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.900e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1
Query:  136 MGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWALGIA 291
            MG +V P++ FL  TVDQG N+ NA  +L + V+ CN +R+NTAV+WALGIA
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIA 52          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5554.13055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.100e-1956.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE5.100e-1953.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE6.600e-1951.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.270e-1851.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE3.290e-1852.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE4.500e-1852.70Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE4.600e-1852.70Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KAN7_9PHAE1.450e-1761.19Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE2.970e-1762.12Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KAS2_9PHAE2.900e-1055.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5554contigH-paniculata_contig5554:11636..12222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size335
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5554.13055.1prot_H-paniculata_contig5554.13055.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5554 11638..11838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.2455647-UTR-H-paniculata_contig5554:11635..116371622930585.2455647-UTR-H-paniculata_contig5554:11635..11637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 11636..11637 -
1691481359.5661337-UTR-H-paniculata_contig5554:11635..116371691481359.5661337-UTR-H-paniculata_contig5554:11635..11637Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 11636..11637 -
1622930585.2772646-UTR-H-paniculata_contig5554:11838..118621622930585.2772646-UTR-H-paniculata_contig5554:11838..11862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 11839..11862 -
1691481359.5928473-UTR-H-paniculata_contig5554:11838..118621691481359.5928473-UTR-H-paniculata_contig5554:11838..11862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 11839..11862 -
1622930585.2935908-UTR-H-paniculata_contig5554:12114..122221622930585.2935908-UTR-H-paniculata_contig5554:12114..12222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 12115..12222 -
1691481359.6058073-UTR-H-paniculata_contig5554:12114..122221691481359.6058073-UTR-H-paniculata_contig5554:12114..12222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5554 12115..12222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930585.261285-CDS-H-paniculata_contig5554:11637..118381622930585.261285-CDS-H-paniculata_contig5554:11637..11838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5554 11638..11838 -
1691481359.579561-CDS-H-paniculata_contig5554:11637..118381691481359.579561-CDS-H-paniculata_contig5554:11637..11838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5554 11638..11838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5554.13055.1

>prot_H-paniculata_contig5554.13055.1 ID=prot_H-paniculata_contig5554.13055.1|Name=mRNA_H-paniculata_contig5554.13055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
MMGTTVAPADVFLDLTVDQGANVFNAIDSLGIPVLTCNAYRLNTAVMWAL
GIAGSTSTSTDIRPNG*
back to top

mRNA from alignment at H-paniculata_contig5554:11636..12222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5554.13055.1 ID=mRNA_H-paniculata_contig5554.13055.1|Name=mRNA_H-paniculata_contig5554.13055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at H-paniculata_contig5554:11636..12222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTACGTCCCTCCGGGTGCAGATGAAGTCAAGCACGTGGGGCTCACCA CAAGGGTCGTTCCAGGGACCCACACGGCGCGCGACATTTCAAAAGATGGA CGAATGAGGTGGGGATTTGCTTCGTTTTCGCTGCCCTTTATTGAACTATC CACCATATATATATGTATACCACATCTATTTGGTCGTTTGCGAACTGTGG TCGTTGGATGATGTACTGGCAGCCCTGACTTTGTGCTTTTGTACTGTCAC ATTCGCTTGGGTTTCATTTAGTAAATATCTAGTGATATCATGTAATTACC ACATGAACCACTCGTTTTCTCATTTACTGTGCTGTTGCACTATCCCCCGT CCTGTATCAGGTTGTAACGGAGTTCTTCGGCGACATGATGGGAACCACCG TCGCGCCGGCCGACGTCTTCCTCGACCTCACTGTAGATCAAGGCGCCAAC GTCTTCAACGCCATCGACAGCCTCGGTATTCCTGTCCTCACGTGCAATGC GTATCGTCTGAACACAGCAGTGATGTGGGCACTAGGGATTGCTGGCAGCA CCAGCACGTCCACAGACATACGCCCGAACGGATAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5554:11636..12222-

>mRNA_H-paniculata_contig5554.13055.1 ID=mRNA_H-paniculata_contig5554.13055.1|Name=mRNA_H-paniculata_contig5554.13055.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig5554:11636..12222- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGAACCACCGTCGCGCCGGCCGACGTCTTCCTCGACCTCACTGT
AGATCAAGGCGCCAACGTCTTCAACGCCATCGACAGCCTCGGTATTCCTG
TCCTCACGTGCAATGCGTATCGTCTGAACACAGCAGTGATGTGGGCACTA
GGGATTGCTGGCAGCACCAGCACGTCCACAGACATACGCCCGAACGGATA
GATGATGGGAACCACCGTCGCGCCGGCCGACGTCTTCCTCGACCTCACTG
TAGATCAAGGCGCCAACGTCTTCAACGCCATCGACAGCCTCGGTATTCCT
GTCCTCACGTGCAATGCGTATCGTCTGAACACAGCAGTGATGTGGGCACT
AGGGATTGCTGGCAGCACCAGCACGTCCACAGACATACGCCCGAACGGAT
AG
back to top