prot_H-paniculata_contig55489.13044.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig55489.13044.1
Unique Nameprot_H-paniculata_contig55489.13044.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length213
Homology
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BLAST of mRNA_H-paniculata_contig55489.13044.1 vs. uniprot
Match: A0A5K1JZW2_9APHY (Cell pattern formation-associated protein MSTU1 (Stunted protein A) (Fragment) n=2 Tax=Ganoderma TaxID=5314 RepID=A0A5K1JZW2_9APHY)

HSP 1 Score: 55.5 bits (132), Expect = 9.680e-6
Identity = 46/158 (29.11%), Postives = 71/158 (44.94%), Query Frame = 0 
Query:   23 VQSTKSVREVWRKLQKHYRASGLKEKSRLLREFNSLRMEPAEESTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNGLPPGYDIERRMIESSDDMPNRARIEKIIANQYNRLQQQKAETGAK------ALAPTMKGTAE----TCQVCYKLGHTAPQC 170
            VQST    EVW +L++ + A G   +    R    +   P +  T ++  V R A  L+ +G ++D++DR LA+ NGLP  Y   + ++      P+   ++ +I    N   +Q +   A       ALA TMK        TC  C K GH    C
Sbjct:   60 VQST-DAHEVWSELRRVHLARGFGTRLAHRRALWRMSKRPDQSMTSYIADVRRAAFRLQEIGASIDDEDRILALTNGLPDSY--SQLVVNLDSTPPSDLTLDYVITRLLNEESRQLSLASAPGTSYDTALAATMKPRTPLERITCFKCSKKGHYQRDC 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55489.13044.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5K1JZW2_9APHY9.680e-629.11Cell pattern formation-associated protein MSTU1 (S... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 120..140
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 6..135
e-value: 2.0E-19
score: 69.6
NoneNo IPR availableGENE3D4.10.60.10coord: 132..211
e-value: 2.8E-6
score: 28.9
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 20..208
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 188..201
score: 9.076
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 154..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55489contigH-paniculata_contig55489:416..1054 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55489.13044.1mRNA_H-paniculata_contig55489.13044.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig55489 416..1054 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig55489.13044.1 ID=prot_H-paniculata_contig55489.13044.1|Name=mRNA_H-paniculata_contig55489.13044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
VRSPQRAWITLITTCKGMTLKIVQSTKSVREVWRKLQKHYRASGLKEKSR
LLREFNSLRMEPAEESTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNGL
PPGYDIERRMIESSDDMPNRARIEKIIANQYNRLQQQKAETGAKALAPTM
KGTAETCQVCYKLGHTAPQCRGGRRASSNIKKTFDGNCRHCGKHGHRGED
CWPAKGDDQKKTK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf