mRNA_H-paniculata_contig55489.13044.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55489.13044.1
Unique NamemRNA_H-paniculata_contig55489.13044.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55489.13044.1 vs. uniprot
Match: A0A5K1JZW2_9APHY (Cell pattern formation-associated protein MSTU1 (Stunted protein A) (Fragment) n=2 Tax=Ganoderma TaxID=5314 RepID=A0A5K1JZW2_9APHY)

HSP 1 Score: 55.5 bits (132), Expect = 9.680e-6
Identity = 46/158 (29.11%), Postives = 71/158 (44.94%), Query Frame = 1 
Query:   67 VQSTKSVREVWRKLQKHYRASGLKEKSRLLREFNSLRMEPAEESTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNGLPPGYDIERRMIESSDDMPNRARIEKIIANQYNRLQQQKAETGAK------ALAPTMKGTAE----TCQVCYKLGHTAPQC 510
            VQST    EVW +L++ + A G   +    R    +   P +  T ++  V R A  L+ +G ++D++DR LA+ NGLP  Y   + ++      P+   ++ +I    N   +Q +   A       ALA TMK        TC  C K GH    C
Sbjct:   60 VQST-DAHEVWSELRRVHLARGFGTRLAHRRALWRMSKRPDQSMTSYIADVRRAAFRLQEIGASIDDEDRILALTNGLPDSY--SQLVVNLDSTPPSDLTLDYVITRLLNEESRQLSLASAPGTSYDTALAATMKPRTPLERITCFKCSKKGHYQRDC 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55489.13044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5K1JZW2_9APHY9.680e-629.11Cell pattern formation-associated protein MSTU1 (S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55489contigH-paniculata_contig55489:416..1054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.1
Seed ortholog evalue1.5e-06
Seed eggNOG ortholog13249.RPRC007141-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3A59N@33154,3BS2Y@33208,3D8HX@33213,3SQCN@50557,422AA@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.2349486-CDS-H-paniculata_contig55489:415..10541622930583.2349486-CDS-H-paniculata_contig55489:415..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55489 416..1054 +
1691481358.7019854-CDS-H-paniculata_contig55489:415..10541691481358.7019854-CDS-H-paniculata_contig55489:415..1054Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55489 416..1054 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55489.13044.1prot_H-paniculata_contig55489.13044.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55489 416..1054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55489.13044.1

>prot_H-paniculata_contig55489.13044.1 ID=prot_H-paniculata_contig55489.13044.1|Name=mRNA_H-paniculata_contig55489.13044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
VRSPQRAWITLITTCKGMTLKIVQSTKSVREVWRKLQKHYRASGLKEKSR
LLREFNSLRMEPAEESTKFLLRVDRVANDLERLGRTVDEDDRNLAIVNGL
PPGYDIERRMIESSDDMPNRARIEKIIANQYNRLQQQKAETGAKALAPTM
KGTAETCQVCYKLGHTAPQCRGGRRASSNIKKTFDGNCRHCGKHGHRGED
CWPAKGDDQKKTK
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mRNA from alignment at H-paniculata_contig55489:416..1054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55489.13044.1 ID=mRNA_H-paniculata_contig55489.13044.1|Name=mRNA_H-paniculata_contig55489.13044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at H-paniculata_contig55489:416..1054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGGAGCCCGCAAAGGGCGTGGATCACGCTAATCACGACCTGCAAAGG
CATGACCCTGAAGATCGTCCAGAGCACCAAGTCGGTACGTGAGGTGTGGA
GGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGT
CTGCTGCGCGAATTTAACTCCCTCAGGATGGAGCCCGCGGAAGAATCCAC
AAAATTCCTGTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTG
GGAGGACCGTCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTA
CCACCAGGGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGACGACAT
GCCAAATAGAGCGCGCATCGAAAAGATCATCGCAAACCAGTATAACAGGC
TTCAGCAACAGAAAGCCGAGACCGGAGCAAAGGCACTGGCCCCCACTATG
AAAGGTACAGCGGAAACTTGCCAGGTGTGCTACAAGCTTGGGCATACAGC
TCCTCAATGCAGGGGGGGTCGAAGGGCATCCTCGAACATCAAGAAAACGT
TCGACGGCAATTGCCGTCACTGCGGGAAACATGGACATCGCGGTGAGGAT
TGCTGGCCCGCCAAAGGGGACGATCAAAAGAAAACGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55489:416..1054+

>mRNA_H-paniculata_contig55489.13044.1 ID=mRNA_H-paniculata_contig55489.13044.1|Name=mRNA_H-paniculata_contig55489.13044.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig55489:416..1054+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGGAGCCCGCAAAGGGCGTGGATCACGCTAATCACGACCTGCAAAGG
CATGACCCTGAAGATCGTCCAGAGCACCAAGTCGGTACGTGAGGTGTGGA
GGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGT
CTGCTGCGCGAATTTAACTCCCTCAGGATGGAGCCCGCGGAAGAATCCAC
AAAATTCCTGTTGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTG
GGAGGACCGTCGACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTA
CCACCAGGGTATGACATTGAGAGGAGAATGATCGAGAGCAGCGACGACAT
GCCAAATAGAGCGCGCATCGAAAAGATCATCGCAAACCAGTATAACAGGC
TTCAGCAACAGAAAGCCGAGACCGGAGCAAAGGCACTGGCCCCCACTATG
AAAGGTACAGCGGAAACTTGCCAGGTGTGCTACAAGCTTGGGCATACAGC
TCCTCAATGCAGGGGGGGTCGAAGGGCATCCTCGAACATCAAGAAAACGT
TCGACGGCAATTGCCGTCACTGCGGGAAACATGGACATCGCGGTGAGGAT
TGCTGGCCCGCCAAAGGGGACGATCAAAAGAAAACGAAAGTGCGGAGCCC
GCAAAGGGCGTGGATCACGCTAATCACGACCTGCAAAGGCATGACCCTGA
AGATCGTCCAGAGCACCAAGTCGGTACGTGAGGTGTGGAGGAAGCTCCAA
AAGCACTACCGCGCTAGCGGCCTCAAAGAGAAGTCACGTCTGCTGCGCGA
ATTTAACTCCCTCAGGATGGAGCCCGCGGAAGAATCCACAAAATTCCTGT
TGCGGGTGGACCGGGTCGCCAATGACTTGGAGCGGCTTGGGAGGACCGTC
GACGAAGATGACAGGAATCTGGCGATAGTGAACGGGCTACCACCAGGGTA
TGACATTGAGAGGAGAATGATCGAGAGCAGCGACGACATGCCAAATAGAG
CGCGCATCGAAAAGATCATCGCAAACCAGTATAACAGGCTTCAGCAACAG
AAAGCCGAGACCGGAGCAAAGGCACTGGCCCCCACTATGAAAGGTACAGC
GGAAACTTGCCAGGTGTGCTACAAGCTTGGGCATACAGCTCCTCAATGCA
GGGGGGGTCGAAGGGCATCCTCGAACATCAAGAAAACGTTCGACGGCAAT
TGCCGTCACTGCGGGAAACATGGACATCGCGGTGAGGATTGCTGGCCCGC
CAAAGGGGACGATCAAAAGAAAACGAAA
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