mRNA_H-paniculata_contig5547.13039.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5547.13039.1
Unique NamemRNA_H-paniculata_contig5547.13039.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: D8LCE1_ECTSI (Glutamate synthase (NADH/NADPH-dependent), N-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE1_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 4.680e-60
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            VVDA EML RMTHRGACGCEENTGDGAGILVAVPDGFLRK A EAGI ELPP GEYAVGNIFVPKFENA+PEAKA+VERVCKQRGM+V+GWRDVPYDNSMIG
Sbjct:  101 VVDANEMLVRMTHRGACGCEENTGDGAGILVAVPDGFLRKAAQEAGIGELPPEGEYAVGNIFVPKFENAIPEAKAIVERVCKQRGMKVVGWRDVPYDNSMIG 202
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A6H5KZS8_9PHAE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.040e-55
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            VVDA EML RMTHRGACGCEENTGDGAGILVAVPDGFLRK A EAGI ELPP GEYAVGNIFVPKFENA+PEAKA+VERVCKQRGM+V+GWRDVPYDNSMIG
Sbjct:   94 VVDANEMLVRMTHRGACGCEENTGDGAGILVAVPDGFLRKAAQEAGIGELPPEGEYAVGNIFVPKFENAIPEAKAIVERVCKQRGMKVIGWRDVPYDNSMIG 195
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A835YLR4_9STRA (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 7.320e-46
Identity = 76/102 (74.51%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            VVDA EML RMTHRGACGCEENTGDGAG+LVA+PD F+R+VA EAGI  LP  G+YAVGN+FVPK   A+PEAKA++ER  + RGM VLGWR+VPYDNSMIG
Sbjct:   73 VVDANEMLVRMTHRGACGCEENTGDGAGMLVAIPDAFMRRVAKEAGIHSLPAVGKYAVGNVFVPKIPEAIPEAKAIIERAVRARGMGVLGWREVPYDNSMIG 174
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A453FCW4_AEGTS (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FCW4_AEGTS)

HSP 1 Score: 126 bits (316), Expect = 1.270e-34
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            VVDAI+MLERM HRGACGCE+NTGDGAGILVA+P  F R+V  +AG  ELPP GEYAVG +F+P  E     +K    +V +  G  +LGWR VP DNS +G
Sbjct:   35 VVDAIQMLERMAHRGACGCEKNTGDGAGILVALPHNFFREVTKDAGF-ELPPPGEYAVGMVFLPTDEKRRERSKTEFTKVAESLGHSILGWRQVPTDNSDLG 135
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A0D2L3Z0_9CHLO (Glutamate synthase (NADPH/NADH) n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2L3Z0_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 2.950e-33
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            V DA++MLERMTHRGACGCEENTGDGAGIL A+PDGF   +   AG+R LPPAG+YAVG +F+PK +     AK V+E V    G EVL WR VP DN  +G
Sbjct:   26 VTDALKMLERMTHRGACGCEENTGDGAGILAAMPDGFFGTIMEAAGVR-LPPAGQYAVGQVFLPKDQQQRDIAKRVMEAVAADLGHEVLAWRSVPTDNRSLG 126
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A109ND50_SORBI (Glutamine amidotransferase type-2 domain-containing protein n=5 Tax=Sorghum bicolor TaxID=4558 RepID=A0A109ND50_SORBI)

HSP 1 Score: 123 bits (308), Expect = 4.600e-33
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            V DAIEMLERM HRGACGCE+NTGDGAGI+VA+P  F ++V  +AG  ELPP GEYAVG +F+P  E    + KA  ++V +  G  +LGWR VP DNS +G
Sbjct:   35 VNDAIEMLERMAHRGACGCEKNTGDGAGIMVALPHDFFKEVTKDAGF-ELPPPGEYAVGMLFMPTDEKRREKGKAEFKKVAESLGHVILGWRPVPTDNSDLG 135
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A7S2V0N1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.730e-33
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFE-NAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            V DA EML RM+HRGACGCEENTGDGAG++V +PD F RK+  +    +LP  G+YAVGN+FVPK + +AV ++KA+VE++  Q GMEVLG+R+VP DNSM+G
Sbjct:  106 VEDANEMLVRMSHRGACGCEENTGDGAGMMVGMPDKFFRKIFQDELGAKLPQVGKYAVGNLFVPKGDPSAVDKSKAIVEKISSQWGMEVLGFRNVPVDNSMLG 208
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A4Y7KGH5_PAPSO (Glutamate synthase (NADH) n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KGH5_PAPSO)

HSP 1 Score: 130 bits (327), Expect = 4.770e-33
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            V DAIEML RMTHRGACGCE+NTGDGAGILVA+PD F  +VA + G  +LPPAGEYAVG +F+P  ++   E+K V  +V +  G EVLGWR VP DNS +G
Sbjct:  135 VTDAIEMLVRMTHRGACGCEQNTGDGAGILVALPDDFFIEVAKDVGF-QLPPAGEYAVGMLFMPTSDSRREESKIVFTKVAESLGHEVLGWRTVPTDNSGLG 235
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A1D6LVB9_MAIZE (Glutamate synthase 1 [NADH] chloroplastic n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6LVB9_MAIZE)

HSP 1 Score: 120 bits (301), Expect = 4.950e-33
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            V D IEMLERM HRGACGCE+NTGDGAGI+VA+P  F ++VA +AGI ELPP GEYAV   F+P  E    + KA  ++V +  G  +LGWR VP DNS +G
Sbjct:   22 VNDTIEMLERMAHRGACGCEKNTGDGAGIMVALPHDFFKEVAKDAGI-ELPPLGEYAVAMFFMPTDEKRRKKGKAEFKKVAESLGHVILGWRLVPTDNSDLG 122
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BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Match: A0A804UC95_MAIZE (Glutamine amidotransferase type-2 domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804UC95_MAIZE)

HSP 1 Score: 128 bits (321), Expect = 9.040e-33
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 VVDAIEMLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEYAVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG 306
            +VDA+EMLERM+HRGACGC++NTGDGAGILVA+PD FLR+V  +AG  ELPP GEYAVG  F+P  ++   + K V   + +  G  VLGWR VP DNS +G
Sbjct:   38 IVDAVEMLERMSHRGACGCDKNTGDGAGILVALPDAFLREVTKDAGF-ELPPQGEYAVGMFFMPHDDDRREKTKLVFHEIAESLGHVVLGWRRVPTDNSDLG 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5547.13039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCE1_ECTSI4.680e-6090.20Glutamate synthase (NADH/NADPH-dependent), N-termi... [more]
A0A6H5KZS8_9PHAE1.040e-5590.20Glutamine amidotransferase type-2 domain-containin... [more]
A0A835YLR4_9STRA7.320e-4674.51Glutamine amidotransferase type-2 domain-containin... [more]
A0A453FCW4_AEGTS1.270e-3459.80Glutamine amidotransferase type-2 domain-containin... [more]
A0A0D2L3Z0_9CHLO2.950e-3361.76Glutamate synthase (NADPH/NADH) n=1 Tax=Monoraphid... [more]
A0A109ND50_SORBI4.600e-3358.82Glutamine amidotransferase type-2 domain-containin... [more]
A0A7S2V0N1_9STRA4.730e-3361.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A4Y7KGH5_PAPSO4.770e-3362.75Glutamate synthase (NADH) n=4 Tax=Papaver somnifer... [more]
A0A1D6LVB9_MAIZE4.950e-3358.82Glutamate synthase 1 [NADH] chloroplastic n=2 Tax=... [more]
A0A804UC95_MAIZE9.040e-3359.80Glutamine amidotransferase type-2 domain-containin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5547contigH-paniculata_contig5547:3750..5013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.8
Seed ortholog evalue7.1e-25
Seed eggNOG ortholog3750.XP_008380938.1
Preferred nameGLT1
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264
KEGG ReactionR00093,R00114,R00248
KEGG Pathwayko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0019676,GO:0019740,GO:0019752,GO:0032502,GO:0040007,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
EggNOG free text desc.glutamate synthase
EggNOG OGs37RTT@33090,3G7BE@35493,4JK1V@91835,COG0069@1,KOG0399@2759
EC1.4.1.13,1.4.1.14
COG Functional cat.E
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size306
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5547.13039.1prot_H-paniculata_contig5547.13039.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5547 3750..4995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.8676953-CDS-H-paniculata_contig5547:3749..37941622930582.8676953-CDS-H-paniculata_contig5547:3749..3794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5547 3750..3794 -
1691481358.527774-CDS-H-paniculata_contig5547:3749..37941691481358.527774-CDS-H-paniculata_contig5547:3749..3794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5547 3750..3794 -
1622930582.8812413-CDS-H-paniculata_contig5547:4752..49951622930582.8812413-CDS-H-paniculata_contig5547:4752..4995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5547 4753..4995 -
1691481358.5416305-CDS-H-paniculata_contig5547:4752..49951691481358.5416305-CDS-H-paniculata_contig5547:4752..4995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5547 4753..4995 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.898723-UTR-H-paniculata_contig5547:4995..50131622930582.898723-UTR-H-paniculata_contig5547:4995..5013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5547 4996..5013 -
1691481358.5518868-UTR-H-paniculata_contig5547:4995..50131691481358.5518868-UTR-H-paniculata_contig5547:4995..5013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5547 4996..5013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5547.13039.1

>prot_H-paniculata_contig5547.13039.1 ID=prot_H-paniculata_contig5547.13039.1|Name=mRNA_H-paniculata_contig5547.13039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MLERMTHRGACGCEENTGDGAGILVAVPDGFLRKVAGEAGIRELPPAGEY
AVGNIFVPKFENAVPEAKAVVERVCKQRGMEVLGWRDVPYDNSMIG
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mRNA from alignment at H-paniculata_contig5547:3750..5013-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5547.13039.1 ID=mRNA_H-paniculata_contig5547.13039.1|Name=mRNA_H-paniculata_contig5547.13039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1264bp|location=Sequence derived from alignment at H-paniculata_contig5547:3750..5013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGACGCCATCGAAATGCTCGAGCGTATGACCCACCGAGGGGCGTG
CGGGTGTGAGGAGAACACCGGAGACGGCGCGGGTATCCTCGTGGCGGTGC
CAGACGGTTTCCTGAGGAAGGTGGCGGGCGAGGCAGGGATCAGGGAGCTG
CCGCCGGCGGGCGAGTACGCGGTGGGGAACATCTTCGTGCCTAAGTTTGA
GAACGCGGTGCCTGAGGCTAAGGCTGTCGTCGAGCGAGTGTGCAAACAGC
GCGGGATGGAGGTGGGTCGTGGATTGATTGACTTGAGGACGTGCCGAAAC
GGACGAAATGCATGCGTGTTTGCTGTCGCGAAGTTTCGAAATCGTACGAA
GTGCAAATAATTTCCCGCTTTTGTGTAACAAGATGGTTGTTAGGATTGGG
TGTTCTTTTTCCTCGTTGAGTATTAGTGTTTTTTTATAAAATCCCGCATC
TATTGGTGCGACCACAAAAGCACTCCTCAATCGAAACAACGTAGTTCGTC
TCTCTTTTTTTTTTTTTCGGTGGGGGGTAGGGGGCAGGTGAGGACGGAGG
CGGAGGGTTGGCGCACTCATCTGAACTGACTGATTTTTTGGCCCCTTACT
CCGATTTGTTGATGAGTGGAGGTTGTTATGTAGTTTTGGGATTTGTAGAT
GGGATGTGACATTTTTCGGTGACGAGGAGGTGACTATTTGACATGATATA
TTGGGTACGGGTTTTTTACGTGTTTGGATCTGCTGGCTGGTCTGCTTTTG
TTCCCTGAACAGTGGAGAAACGAAAAGAAAGGGGCACGGGGAGTGTCCAC
GGGTTGTGGTTGAAATGGGGTATGACGAAGACCAATTTGTACCGAAACAA
AGCACCAATTTCTTTGGACACGTGAAGAAGCAGTTAGCTGAACACTCCAG
AGTAGGTATATATATAGAGAGAGAGAGAGTATTCCTGGAAGCCAACTTAT
CCACATGCAATTGACTGGAATCAGTCGTCGTGCTTTCGTTTTTGTTTTGT
TGTGGTTGACTCGTCCTTTCTTACTCTCGTCGTTGATGGATCGTTTTTTT
TGTTGTTTTTTTTTGCTGACTCTTGACGGGGGTTTTTCGTGTTACCACTG
TTGGACCTGAATAATCGGGTGCGATGTGTCTCTGTGTTTTTTTACGCTTT
GTTGTTCGTATTTTTATTCCTGCTTCTTGTCGTTTTTAATCGATCGTGAT
GGGTGGTGGATGGTTGCAGGTCTTGGGATGGAGAGATGTACCCTACGACA
ACTCCATGATCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5547:3750..5013-

>mRNA_H-paniculata_contig5547.13039.1 ID=mRNA_H-paniculata_contig5547.13039.1|Name=mRNA_H-paniculata_contig5547.13039.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig5547:3750..5013- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCGAGCGTATGACCCACCGAGGGGCGTGCGGGTGTGAGGAGAACAC
CGGAGACGGCGCGGGTATCCTCGTGGCGGTGCCAGACGGTTTCCTGAGGA
AGGTGGCGGGCGAGGCAGGGATCAGGGAGCTGCCGCCGGCGGGCGAGTAC
GCGGTGGGGAACATCTTCGTGCCTAAGTTTGAGAACGCGGTGCCTGAGGC
TAAGGCTGTCGTCGAGCGAGTGTGCAAACAGCGCGGGATGGAGATGCTCG
AGCGTATGACCCACCGAGGGGCGTGCGGGTGTGAGGAGAACACCGGAGAC
GGCGCGGGTATCCTCGTGGCGGTGCCAGACGGTTTCCTGAGGAAGGTGGC
GGGCGAGGCAGGGATCAGGGAGCTGCCGCCGGCGGGCGAGTACGCGGTGG
GGAACATCTTCGTGCCTAAGTTTGAGAACGCGGTGCCTGAGGCTAAGGCT
GTCGTCGAGCGAGTGTGCAAACAGCGCGGGATGGAGGTCTTGGGATGGAG
AGATGTACCCTACGACAACTCCATGATCGGGGTCTTGGGATGGAGAGATG
TACCCTACGACAACTCCATGATCGGG
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