mRNA_H-paniculata_contig5545.13035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5545.13035.1
Unique NamemRNA_H-paniculata_contig5545.13035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5545.13035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5545contigH-paniculata_contig5545:1387..6118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size489
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5545.13035.1prot_H-paniculata_contig5545.13035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5545 1704..6118 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.4068325-UTR-H-paniculata_contig5545:1386..17031622930582.4068325-UTR-H-paniculata_contig5545:1386..1703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5545 1387..1703 +
1691481358.3410091-UTR-H-paniculata_contig5545:1386..17031691481358.3410091-UTR-H-paniculata_contig5545:1386..1703Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5545 1387..1703 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.4222736-CDS-H-paniculata_contig5545:1703..17861622930582.4222736-CDS-H-paniculata_contig5545:1703..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5545 1704..1786 +
1691481358.3503299-CDS-H-paniculata_contig5545:1703..17861691481358.3503299-CDS-H-paniculata_contig5545:1703..1786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5545 1704..1786 +
1622930582.436698-CDS-H-paniculata_contig5545:6030..61181622930582.436698-CDS-H-paniculata_contig5545:6030..6118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5545 6031..6118 +
1691481358.3591473-CDS-H-paniculata_contig5545:6030..61181691481358.3591473-CDS-H-paniculata_contig5545:6030..6118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5545 6031..6118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5545.13035.1

>prot_H-paniculata_contig5545.13035.1 ID=prot_H-paniculata_contig5545.13035.1|Name=mRNA_H-paniculata_contig5545.13035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MRRQVQEQGSREALDLQKLQHLRAKNALWRSWSIGEGLSEVASEESENVV
VRRVVSK
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mRNA from alignment at H-paniculata_contig5545:1387..6118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5545.13035.1 ID=mRNA_H-paniculata_contig5545.13035.1|Name=mRNA_H-paniculata_contig5545.13035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4732bp|location=Sequence derived from alignment at H-paniculata_contig5545:1387..6118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACTGGGACCCGACTGTCGATCCAACTTCACCTTCCAACTTCTAGCA
ACTTCTGTTGTGTGAGATCATTACGATTAGCGCGTGTATGAAGTACAAAT
ACACACCAGTGGCAGTGTTGCACGACCTGAATCTACTAGTCTATGCTAGA
CCTTGGAGGTCGTTGTGTTGTGGTAGATATTTCACCACGAATAGTGCTGT
CGGTTTGATGAGGCTATAGTGCGTCAGTTTGGGTTGTGGTTGAACTTCCA
TCAGTTGACACCGCCAAATTTGGCCCAACACGAAACGGACAGTGGAGGAT
TGTCTTTAGTACGAGGCATGAGGCGACAGGTGCAGGAGCAGGGCTCACGC
GAAGCCCTCGACTTGCAGAAGCTTCAACATCTACGGGCAAAAAATGCACT
GTGAGTGTATTCGCGTTGTGTATGCACGATATATCATCATGTGGTGGTCC
TCATGTCGAACAATCAATCACTGAGCTCGGACATCATATGCTTGTGCTTC
AGACTCTCTATTCCAAGACAATCATTGATCACCCATTTGATCAGGGTACA
ATAATCTTGTGCAAAGTTTTCACCTCAGAAACACAACTACTTGTACAGTT
TGATTACCAGCATAAAGTCGCACAGTTTGCTTCTCCGCTCATCCTCTCAA
AGTTGGTAAACAGTGACCCATCCCCATCAGCATCTGATATGCCTTTCAAT
CTCTGTTAACGTTGCGTGCCCTGAGAGGAATCTGGGGGGTGAAGCTTATC
AACGGCCGAACGGACAGGGACATTGCATGACACCACCTCATTGAACTGAA
CGAAGAAGACGCTACGGTTGGAACTGTTCCAGTAGGCATGGAGAGTTGAC
CGCAAGTGTCGCAGAGGTGCAATGTCACTCCAAGCAATCATAGATGGATG
TGTCTTGCAATGTGTAGTTCAGTGACCTCCTAAAACAAGTTACTGTCTGT
ACATTGTCCTTGGTGGGTTATCGTCGGAGAAATATGGCGTCAGTCAGGAC
CTGAGATGCAACATGGACTGCCTCTCTGTTCTCAATTTTCATAGTAATAC
CGTTTTTGCCGCGCAAACGATACATAATAGTATATCGTTCCTGTTTGTCG
AGGGAGGCGGGCGGAGTGATGAGGATGCCTAATGGGTGATCGACTACCAC
TGCCACGTCTCACATAATATGGCAATTCAACATATTATACGATGGGTAGC
TGTCAGACAGTAAATTAAGGGCGTAAATACAACAGCCAGTGCACAGTTCA
GCCAAATTCAGTCCAGTGGTGTCGGCGAATCCGGTATTCTAGTACAAAGT
AGCTGTCTCTAAACATGCGGCGAGGTAGCGACTCTTTGGTCTTCGCTCAA
TCTCCCCAGGAGAGGTGGTCATAAATAAAGCGATATGGGGATAAAAGGCT
TCGCCTTCATGGCCTTTTGGTGCAGGTGCCAGGTGGTCGTATGCACACTG
AATTATCACAGAGGTCACAAGGAGAGGCGAAAGTTTTTCATATTTAATTC
GTTGAATTTCATTTTCTCTTCTACTTGCCTTTCCTATTTCTGAACTAAAC
AAGAAACTGACAATAAATGTCAAGCGCTGCACAAAAACAGTGCAGTCGAT
ATGGGCAAAAACCATGCCGACTACCTCTCTGTCTCAACAGCGGCGGCTCC
CTATCCCGGTTACCATGCCATAGCTTCTTATTTCCCTGTTTTTGAGGAAG
GATGGGGATGGGAACTGGGGCTACAAAAACTACAACCCTCTTAGTGCCGA
TCTCCGCAGAATTCTTGTGGGTGCCGGTCTCACTTTTCTCCATTAGTCTT
GCGCTTTCTGTGTTTTGCGGCATACAGGCGCCTAAGCTCAGAGAACTCTC
CTCGCGGTACCTCACCTGCCTGGGGATCACAGATACTTTGACCGGGTAAA
ACTGATGGAGACAGCATAATGAAACTGGCGTACATACGAAAGCTGGACGT
GGGTAACTATCCCAGTGGAAGTATTAGAGAAGGTTTTGCCCTCGGATAGA
AAAAAAATCTCCGCAGAATGCAGAATCCGATCTAATACTATGTCCTGCAA
ATAGAAAAATGTCTGCTGATGGCCAATAGGGTATAGTTCGGTTCTCTCCG
GCCATTTTAGAGCACCGCGTGAAGGATCATTGTTGGGCGCCCCTAGTACG
TGAACGTCAACTCTGCAAGCCAGTTCTCGCTCGGGGAGCTTCATAGCAAC
ATCCCTTAGACCACATTTGCCACCCTTTCCTGGCAAAAAGCGGTTATCGT
CATGCGCTCACTTCGTTCACTTGGATTTATCCATTCTTTTTTCAAAAGAC
TGGGCTACGTGTACCCCTCTCCTGCTTGAGGATGTCACATGTTGTGGTCG
ATTGTGTACCTTTTCCTAGCCAACCCGCGAGCTCTTCTCTGCGTTGTAAA
ACCGGCATTGAAATTGGCTCTGCGGGGGGGTTTTCGCTTCCCTCCAAGAG
AACCGAAAACGTCCACTCACCAAACTGGTTCTACCTGACCTAACCGCGTT
TGTGTAGTGTAGGGTGCGTTAGCAGAGTGCACTCGAGAAAAGCAGCACCG
GCCCTAAGTGGTGCCCGAAAATAGCGTCGTAGGACCAAAGTATAATTTTA
ATTGGACATGGTTACGGAGATACGGTAGACGCCGCTGTTTGGACGTGGAA
CCCGGTACAGAGGATATACACAGCATAGACCTGCTGTGCACACCCTTCAG
CATCCCATATTCTTTATTGTTCAACGTTGGGTCGATTTTTTCTCATTTGC
AAAACGCCCTCCGGTGCCCCAAAGGCCAGAGGCCTCGAGATTCCAAACGG
AAACGAAAGACGAGAAGGGCTGTGAGTCGTGTGTACGTGTGACGCAGCAA
CAAATGTTTTTTATGTTCCGAGTAGCTTCACGACACAATGAAGACAACTT
CGAAATATGAACGGCAAAAACACGGCACAAAAGAGCAAGCAAAGTAATCA
GCGTCTGATCTAATTGTTTGATTTTGTATTGCTGAACACCTTACTTAGCG
AACAGCCACAGTCCATCAATACATATTGTGCTTTGATTGAAGACTGACAT
TGATTCATTCCCCGGACCGATATGAATACTTGGAGCATTTGTCTCGAAAT
TGGAAAAGTATTTGCCCGAAATTCACCACATATATTTATTCAGGCACATA
AGAATTCGATGTTGACCCCTCTTTATTGGTGTTAGTAGTAGTTTTTGGAG
CAGTCATAGATAGTCCCGTGGGAAACATAAGAGTAAATGTAATTATGGTC
AACCTAACAAGCAAATACTATTGAAATTCTCATCGAAAAATACCCCAAGT
CACACGCCGAGCGCTGCACGCCCCCATTGCATTGGGGATTCTCGACGTGT
GTGCGAACACCCGGTCTGAATGCGCCCATATCTTGACACCTGTGCTGTCA
GACTAGACAACAAACAACTTTGTTTTATTCGAACACTTAAGGGGGGATGG
GGGGGGAGGAGGTCAATTGATTGACATCAGCTGTGCGATGTAAACTGAAT
ATCTGTCTAAATACAAAAATATGTCCTATTGATTACATCGAGGGGGGTAA
GTGATTTTGGCATCACCTAAACCGTGCACTGAAACGACTAAAATTCTATT
CAAAAGAGCGCATGCTTTCTAAATAGAATGACCTACTGTATCATCTGGAG
CGGGAGGCAGTCGGCAGCGCGTAGGTCGAGAATGACGGGCTTCCATTGAA
AATAGAAAATATGCATGAAATACTGGAGTGTTTGCGAACAGCAATTTTCG
GTAGGTAATATATATAATACTGTGTTCTTTTATCGTCCAACAGTAGCAGT
ATAGGGTATAGAGAGTACATAATAGTAGTGTGTGTAGTGAATGGTGCAGT
ACGACAGTAACATACAGCAGCCAGGCAGCGTGTTTTCACATATCACACAA
GTAACACCCACACACACCCCACCCAGCTGAATCAGCACACGCTCCCGGAA
CACGACACGCTGAGCGCTCGGTATAGCTATCATAGCCAATCGCCGGTGTC
TGGTGGAATGATTTCGTGGCGCTGCACTGTGTTCCAATCGCAGAGCCTCT
TCGTTGGTTTCTTGTAAGGAATCTCGCGTGGCGTTGAATTCCGCGGCCTT
GTCTCAAAAAGATCTTCTCGGGGACTTTAGACAAAACATGTGGATTAAAC
TGCTCCAATAATATGTAAAAGACGAGAAAAAGTTCTCATGATTGGTAAAA
GAGGTCTCTCCAATCAATCGCCGAGCTTCTTTTGTTTTCCGGTAATGATC
ACACCGGTTTTTTTTTACATGTATAGGACAAAAATATTCTACTCACACCC
GGGAGTGCACGGAACGATATGTACACCCTTGGATGAGACGTTACACACAG
AAAAACTGCCGCCGGCACTACATATTTACATTCGCATACATTGCAGCCAT
ATGAGTGTTGCCAACGCATCTAGATCAGATGTACGCTCTACCAACGCAGT
AAGCAAATTGTCTCGAACGCATAGCTTGCTACCTGGGGAAGCTCTGTGGA
GCTTTTCCATGGTTGAAAAACTTTATGCCATGCTCGATGCCTGTCGTATT
ACGAAAACTTCAACACTGAAGGTGCTATATGAGTGGCGCGCTACGTAGTT
GGTTGACCTTGTTTTTGGTGTTTTTTTTAAAATGTGGCTCACAGATGGCG
ATCTTGGAGCATTGGGGAGGGCCTCAGCGAGGTCGCTAGCGAAGAATCGG
AAAACGTCGTCGTAAGACGTGTTGTGTCAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5545:1387..6118+

>mRNA_H-paniculata_contig5545.13035.1 ID=mRNA_H-paniculata_contig5545.13035.1|Name=mRNA_H-paniculata_contig5545.13035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig5545:1387..6118+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCGACAGGTGCAGGAGCAGGGCTCACGCGAAGCCCTCGACTTGCA
GAAGCTTCAACATCTACGGGCAAAAAATGCACTATGAGGCGACAGGTGCA
GGAGCAGGGCTCACGCGAAGCCCTCGACTTGCAGAAGCTTCAACATCTAC
GGGCAAAAAATGCACTATGGCGATCTTGGAGCATTGGGGAGGGCCTCAGC
GAGGTCGCTAGCGAAGAATCGGAAAACGTCGTCGTAAGACGTGTTGTGTC
AAAGATGGCGATCTTGGAGCATTGGGGAGGGCCTCAGCGAGGTCGCTAGC
GAAGAATCGGAAAACGTCGTCGTAAGACGTGTTGTGTCAAAG
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