mRNA_H-paniculata_contig55448.13034.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55448.13034.1
Unique NamemRNA_H-paniculata_contig55448.13034.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A6H5L8Q2_9PHAE (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8Q2_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.060e-28
Identity = 58/67 (86.57%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   10 LRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQ 210
            L    +GCEEYEAL AAKA ILDFVETRM SMAPNVCALIGSRITAQLL LTGGLTAMSKTPSCNLQ
Sbjct:  251 LHECIKGCEEYEALAAAKASILDFVETRMTSMAPNVCALIGSRITAQLLGLTGGLTAMSKTPSCNLQ 317          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A7S2XZL3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.730e-18
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 PSLLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            P  L +  QG  E + L  AK  IL+FVE+RM ++APN+CALIGSR+ AQLL L+GGLT +SK PSCNLQV
Sbjct:  155 PQDLDQCLQGAREVQDLEQAKTSILEFVESRMTAIAPNICALIGSRLAAQLLGLSGGLTQLSKIPSCNLQV 225          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A7S1U3H0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3H0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.800e-17
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 PSLLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            P +L    +GCEE   L A +  +L FVE RM  +APNVCALIG+++ A+LLA+ GGL AMS+ PSCNLQV
Sbjct:  210 PEVLAECLKGCEEVNGLDADRRTLLSFVEGRMMGLAPNVCALIGAQVAARLLAIAGGLNAMSRVPSCNLQV 280          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A836CKH5_9STRA (Nop domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-16
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   10 LRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQ 210
            L+R  +GC E+ AL  AK+ +L FVE +M+++APN+CA+IGSRI AQL+   GGL A+S  P+CNLQ
Sbjct:  207 LKRVLEGCAEFTALAEAKSTLLTFVEGKMSAIAPNMCAIIGSRIAAQLMGQAGGLAALSNIPACNLQ 273          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A7S2C7I0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C7I0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 5.590e-15
Identity = 40/68 (58.82%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   10 LRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            L +  QGC E   L   K K L FVE+RMN +APNVCALI + I AQL+ L GGL  MSK PSCNLQ+
Sbjct:  198 LSQCMQGCREAVELEEDKMKSLTFVESRMNMVAPNVCALIDTIIAAQLMGLAGGLVMMSKIPSCNLQI 265          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A7R9UDN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDN0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.440e-15
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 LLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            +L+   +GCEE   L   + K+L FVE+RM S+APN CALIG+++ A+L+A+ GGL AMS+ PS NLQ+
Sbjct:  197 VLQECLKGCEEILGLDVDRRKLLSFVESRMMSLAPNTCALIGAQVAARLMAIAGGLQAMSRIPSSNLQL 265          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A1V9Y426_9STRA (U4/U6 small nuclear ribonucleoprotein Prp31 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y426_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.450e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 PSLLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            P  L+     CEE  AL + K KIL FVETRM  +APN+ ALIG+RITAQL+ + GG+  +S+ PSCN+QV
Sbjct:  190 PEELQMMLDTCEEVIALDSDKGKILQFVETRMIYLAPNLSALIGTRITAQLIGIAGGVDELSRIPSCNIQV 260          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A2K1XTC6_POPTR (Nop domain-containing protein n=12 Tax=Saliceae TaxID=238069 RepID=A0A2K1XTC6_POPTR)

HSP 1 Score: 77.0 bits (188), Expect = 7.610e-15
Identity = 34/69 (49.28%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    7 LLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            +L++T + C+   AL +AK K+LDFVETRM  +APN+ A++GS + A+L+   GGLTA++K P+CN+Q+
Sbjct:  185 VLQKTIEACDRALALDSAKKKVLDFVETRMGYIAPNLSAIVGSAVAAKLMGTAGGLTALAKMPACNVQL 253          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A388M7R3_CHABU (Nop domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M7R3_CHABU)

HSP 1 Score: 76.3 bits (186), Expect = 1.430e-14
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   10 LRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            L++T   C+   AL  AK K+L FVE+RM  +APN+ A++GS I AQL+ + GGLTA+SK PSCN++V
Sbjct:  191 LKKTVDACDRALALDGAKTKVLSFVESRMAFIAPNLSAVVGSTIAAQLMGVAGGLTALSKMPSCNIRV 258          
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Match: A0A2K3PCW6_TRIPR (U4/U6 small nuclear ribonucleoprotein Prp31-like (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PCW6_TRIPR)

HSP 1 Score: 75.1 bits (183), Expect = 3.190e-14
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 1
Query:    7 LLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQLLALTGGLTAMSKTPSCNLQV 213
            +L +T + C+   AL +AK KILDFVE+RM  +APNV A++GS + A+L+   GGL+A++K P+CN+Q+
Sbjct:  113 VLNKTIEACDRALALDSAKKKILDFVESRMGYIAPNVSAIVGSAVAAKLMGTAGGLSALAKMPACNVQL 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55448.13034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8Q2_9PHAE3.060e-2886.57Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XZL3_9STRA2.730e-1860.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1U3H0_9STRA3.800e-1756.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836CKH5_9STRA1.800e-1655.22Nop domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2C7I0_9STRA5.590e-1558.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UDN0_9STRA7.440e-1552.17Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1V9Y426_9STRA7.450e-1554.93U4/U6 small nuclear ribonucleoprotein Prp31 (Fragm... [more]
A0A2K1XTC6_POPTR7.610e-1549.28Nop domain-containing protein n=12 Tax=Saliceae Ta... [more]
A0A388M7R3_CHABU1.430e-1452.94Nop domain-containing protein n=1 Tax=Chara brauni... [more]
A0A2K3PCW6_TRIPR3.190e-1449.28U4/U6 small nuclear ribonucleoprotein Prp31-like (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55448contigH-paniculata_contig55448:269..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7.5e-24
Seed eggNOG ortholog2880.D8LKU3
Preferred namePRPF31
KEGG koko:K12844
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001654,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005687,GO:0005690,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006346,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016604,GO:0016607,GO:0017069,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030621,GO:0030622,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034708,GO:0035097,GO:0040029,GO:0043010,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044877,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060041,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070417,GO:0070990,GO:0071005,GO:0071011,GO:0071166,GO:0071339,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.spliceosomal tri-snRNP complex assembly
EggNOG OGsCOG1498@1,KOG2574@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930582.329205-CDS-H-paniculata_contig55448:268..4811622930582.329205-CDS-H-paniculata_contig55448:268..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55448 269..481 -
1691481358.3250642-CDS-H-paniculata_contig55448:268..4811691481358.3250642-CDS-H-paniculata_contig55448:268..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55448 269..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55448.13034.1prot_H-paniculata_contig55448.13034.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55448 269..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55448.13034.1

>prot_H-paniculata_contig55448.13034.1 ID=prot_H-paniculata_contig55448.13034.1|Name=mRNA_H-paniculata_contig55448.13034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
PSLLRRTSQGCEEYEALVAAKAKILDFVETRMNSMAPNVCALIGSRITAQ
LLALTGGLTAMSKTPSCNLQV
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mRNA from alignment at H-paniculata_contig55448:269..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55448.13034.1 ID=mRNA_H-paniculata_contig55448.13034.1|Name=mRNA_H-paniculata_contig55448.13034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig55448:269..481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCCCTCCTTCGCCGAACGAGCCAGGGGTGCGAAGAGTACGAGGCGTT AGTTGCCGCTAAGGCTAAGATATTGGACTTTGTCGAGACGAGGATGAACA GCATGGCGCCAAACGTGTGTGCCCTGATCGGCAGTCGAATCACGGCGCAG CTGTTGGCGCTGACGGGGGGGCTCACTGCGATGTCCAAGACCCCGTCTTG TAATTTACAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig55448:269..481-

>mRNA_H-paniculata_contig55448.13034.1 ID=mRNA_H-paniculata_contig55448.13034.1|Name=mRNA_H-paniculata_contig55448.13034.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig55448:269..481- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATCCCTCCTTCGCCGAACGAGCCAGGGGTGCGAAGAGTACGAGGCGTT
AGTTGCCGCTAAGGCTAAGATATTGGACTTTGTCGAGACGAGGATGAACA
GCATGGCGCCAAACGTGTGTGCCCTGATCGGCAGTCGAATCACGGCGCAG
CTGTTGGCGCTGACGGGGGGGCTCACTGCGATGTCCAAGACCCCGTCTTG
TAATTTACAGGTGCCATCCCTCCTTCGCCGAACGAGCCAGGGGTGCGAAG
AGTACGAGGCGTTAGTTGCCGCTAAGGCTAAGATATTGGACTTTGTCGAG
ACGAGGATGAACAGCATGGCGCCAAACGTGTGTGCCCTGATCGGCAGTCG
AATCACGGCGCAGCTGTTGGCGCTGACGGGGGGGCTCACTGCGATGTCCA
AGACCCCGTCTTGTAATTTACAGGTG
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