prot_H-paniculata_contig5543.13030.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5543.13030.1
Unique Nameprot_H-paniculata_contig5543.13030.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length53
Homology
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A8J5L921_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5L921_ZINOF)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-7
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    4 LSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            L+AA TPQQNGV ER  R+V  M RS + + +M  R WAEA R AVY LN
Sbjct:   60 LTAAYTPQQNGVVERRNRTVMVMARSLLKSTHMPARLWAEAVRHAVYLLN 109          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2I006_9BRAS (Integrase catalytic domain-containing protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I006_9BRAS)

HSP 1 Score: 55.1 bits (131), Expect = 1.990e-7
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+AA TPQQNGVAER  RSV  MTR  ++  ++  R+WAEA + AV+ LN
Sbjct:  117 QLTAAYTPQQNGVAERKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 167          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A2K3KY79_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KY79_TRIPR)

HSP 1 Score: 53.9 bits (128), Expect = 5.100e-7
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+AA TPQQNGVAER  R+V  M RS ++  N+  ++WAEA   A Y LN
Sbjct:  279 QLTAAYTPQQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLN 329          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6L2NI96_TANCI (Putative ribonuclease H-like domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NI96_TANCI)

HSP 1 Score: 53.5 bits (127), Expect = 6.970e-7
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            E S ARTPQQNGVAER  R++ E TR+ ++ + +   +WAEA   A Y LN
Sbjct:  625 EFSVARTPQQNGVAERKNRTLIEATRTMLVDSKLPTIFWAEAVNTACYVLN 675          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A1J3IL10_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IL10_NOCCA)

HSP 1 Score: 53.5 bits (127), Expect = 6.990e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+AA TPQQNGVAER  RSV  MTR  ++  ++  ++W EA + AVY LN
Sbjct:  587 QLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYVLN 637          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00125D29F3 (uncharacterized protein LOC116005721 n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D29F3)

HSP 1 Score: 53.5 bits (127), Expect = 6.990e-7
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 MQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            + +LSAARTPQQNGVAER  R++ E TRS +  + +  R+WAEA   A Y  N
Sbjct:  744 LHQLSAARTPQQNGVAERRNRTLKEATRSMITFSGLPKRFWAEAINTACYTQN 796          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 53.5 bits (127), Expect = 6.990e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+AA TPQQNGVAER  RSV  MTR  ++  ++  ++W EA + AVY LN
Sbjct:  587 QLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILN 637          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: UPI00178C80A5 (DDE-type integrase/transposase/recombinase n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00178C80A5)

HSP 1 Score: 53.1 bits (126), Expect = 9.160e-7
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    1 MQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            M +LSAARTPQQNGVAER  R++ E  R+ +  + +  RYWAEA   A Y  N
Sbjct:  271 MHQLSAARTPQQNGVAERRNRTLKEAARTMIAESGLPYRYWAEAINTACYTQN 323          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A6D2HN99_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HN99_9BRAS)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+AA TPQQNGVAE   RSV  MTR  ++  ++  R+WAEA + AV+ LN
Sbjct:  566 QLTAAYTPQQNGVAEMKNRSVMNMTRCMLLEMSVPRRFWAEAVQYAVHILN 616          
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 52.8 bits (125), Expect = 1.310e-6
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    3 ELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVYCLN 53
            +L+A RTPQQNGVAER  R++ +M RS +   ++   +WAEA   AVY LN
Sbjct:  635 QLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLN 685          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5543.13030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J5L921_ZINOF1.200e-758.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2I006_9BRAS1.990e-754.90Integrase catalytic domain-containing protein n=2 ... [more]
A0A2K3KY79_TRIPR5.100e-752.94Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A6L2NI96_TANCI6.970e-750.98Putative ribonuclease H-like domain-containing pro... [more]
A0A1J3IL10_NOCCA6.990e-752.94Retrovirus-related Pol polyprotein from transposon... [more]
UPI00125D29F36.990e-752.83uncharacterized protein LOC116005721 n=1 Tax=Ipomo... [more]
Q9C7Y1_ARATH6.990e-752.94Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
UPI00178C80A59.160e-752.83DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6D2HN99_9BRAS1.310e-652.94Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A068B703_GOSBA1.310e-650.98Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..53
e-value: 3.2E-6
score: 28.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5543contigH-paniculata_contig5543:815..973 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5543.13030.1mRNA_H-paniculata_contig5543.13030.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5543 815..997 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5543.13030.1 ID=prot_H-paniculata_contig5543.13030.1|Name=mRNA_H-paniculata_contig5543.13030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MQELSAARTPQQNGVAERSWRSVFEMTRSKMITANMGGRYWAEAARAAVY
CLN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf