mRNA_H-paniculata_contig5541.13028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5541.13028.1
Unique NamemRNA_H-paniculata_contig5541.13028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5541.13028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5541contigH-paniculata_contig5541:8134..8693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5541.13028.1prot_H-paniculata_contig5541.13028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5541 8136..8660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.4033377-UTR-H-paniculata_contig5541:8133..81351622930581.4033377-UTR-H-paniculata_contig5541:8133..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5541 8134..8135 +
1691481357.8625524-UTR-H-paniculata_contig5541:8133..81351691481357.8625524-UTR-H-paniculata_contig5541:8133..8135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5541 8134..8135 +
1622930581.4437394-UTR-H-paniculata_contig5541:8660..86931622930581.4437394-UTR-H-paniculata_contig5541:8660..8693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5541 8661..8693 +
1691481357.8782477-UTR-H-paniculata_contig5541:8660..86931691481357.8782477-UTR-H-paniculata_contig5541:8660..8693Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5541 8661..8693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.4259572-CDS-H-paniculata_contig5541:8135..86601622930581.4259572-CDS-H-paniculata_contig5541:8135..8660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5541 8136..8660 +
1691481357.8707576-CDS-H-paniculata_contig5541:8135..86601691481357.8707576-CDS-H-paniculata_contig5541:8135..8660Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5541 8136..8660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5541.13028.1

>prot_H-paniculata_contig5541.13028.1 ID=prot_H-paniculata_contig5541.13028.1|Name=mRNA_H-paniculata_contig5541.13028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=175bp
MYYTSHVDADTAKLDTWCRGDSRGIAALQKHLQSPSIGRNGDLQLLLQGY
PVLPTLSWTVMATVMTIPNPSRLCLEARFTKPADDIQYAYSVFDRENDEP
RPKPTSNTSKEESAYAHTSWRWSMHDIRMYIFSRSPVDVFLTDIFLRARL
ELALTFSSHVFFPTKSNGHEKLLS*
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mRNA from alignment at H-paniculata_contig5541:8134..8693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5541.13028.1 ID=mRNA_H-paniculata_contig5541.13028.1|Name=mRNA_H-paniculata_contig5541.13028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=560bp|location=Sequence derived from alignment at H-paniculata_contig5541:8134..8693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATGTATTACACGTCACACGTTGACGCCGACACAGCCAAGCTAGATACA
TGGTGCAGAGGCGATAGCCGTGGGATTGCAGCCTTGCAGAAGCACCTACA
GTCCCCATCGATAGGCAGGAATGGCGACCTTCAGCTGCTGCTGCAAGGCT
ATCCCGTGTTGCCCACGTTGTCATGGACGGTGATGGCCACAGTGATGACG
ATTCCTAATCCATCCCGTCTGTGCCTCGAAGCACGCTTCACGAAACCGGC
CGATGACATACAGTATGCATATAGTGTGTTTGATCGGGAGAACGACGAGC
CTAGGCCAAAACCCACTTCCAACACGAGTAAAGAAGAGTCGGCGTACGCG
CACACCTCGTGGCGATGGAGCATGCATGACATTCGTATGTATATCTTCTC
ACGCTCCCCCGTCGACGTATTTCTGACTGATATCTTTCTCCGGGCTCGGC
TCGAACTTGCACTTACATTTTCTTCGCATGTTTTTTTCCCGACCAAAAGT
AACGGCCATGAAAAACTCCTGTCCTAAGGAGCTGTCGTGGGGCTAACTTG
GTTTCTCGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig5541:8134..8693+

>mRNA_H-paniculata_contig5541.13028.1 ID=mRNA_H-paniculata_contig5541.13028.1|Name=mRNA_H-paniculata_contig5541.13028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at H-paniculata_contig5541:8134..8693+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTACACGTCACACGTTGACGCCGACACAGCCAAGCTAGATACATG
GTGCAGAGGCGATAGCCGTGGGATTGCAGCCTTGCAGAAGCACCTACAGT
CCCCATCGATAGGCAGGAATGGCGACCTTCAGCTGCTGCTGCAAGGCTAT
CCCGTGTTGCCCACGTTGTCATGGACGGTGATGGCCACAGTGATGACGAT
TCCTAATCCATCCCGTCTGTGCCTCGAAGCACGCTTCACGAAACCGGCCG
ATGACATACAGTATGCATATAGTGTGTTTGATCGGGAGAACGACGAGCCT
AGGCCAAAACCCACTTCCAACACGAGTAAAGAAGAGTCGGCGTACGCGCA
CACCTCGTGGCGATGGAGCATGCATGACATTCGTATGTATATCTTCTCAC
GCTCCCCCGTCGACGTATTTCTGACTGATATCTTTCTCCGGGCTCGGCTC
GAACTTGCACTTACATTTTCTTCGCATGTTTTTTTCCCGACCAAAAGTAA
CGGCCATGAAAAACTCCTGTCCTAAATGTATTACACGTCACACGTTGACG
CCGACACAGCCAAGCTAGATACATGGTGCAGAGGCGATAGCCGTGGGATT
GCAGCCTTGCAGAAGCACCTACAGTCCCCATCGATAGGCAGGAATGGCGA
CCTTCAGCTGCTGCTGCAAGGCTATCCCGTGTTGCCCACGTTGTCATGGA
CGGTGATGGCCACAGTGATGACGATTCCTAATCCATCCCGTCTGTGCCTC
GAAGCACGCTTCACGAAACCGGCCGATGACATACAGTATGCATATAGTGT
GTTTGATCGGGAGAACGACGAGCCTAGGCCAAAACCCACTTCCAACACGA
GTAAAGAAGAGTCGGCGTACGCGCACACCTCGTGGCGATGGAGCATGCAT
GACATTCGTATGTATATCTTCTCACGCTCCCCCGTCGACGTATTTCTGAC
TGATATCTTTCTCCGGGCTCGGCTCGAACTTGCACTTACATTTTCTTCGC
ATGTTTTTTTCCCGACCAAAAGTAACGGCCATGAAAAACTCCTGTCCTAA
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