mRNA_H-paniculata_contig554.13025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig554.13025.1
Unique Name	mRNA_H-paniculata_contig554.13025.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig554.13025.1 vs. uniprot
Match: D7G9G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G0_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.740e-20
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 1

Query:   73 EGDRFIPNRNAMDFNLCRHILLNNSNEENEPQAGSEAPAPLRREFQQAVRDTLLSPAAG 249
            EGDRFIPNR +M+F+LC H+LL++ N ENEPQ GS+APAPLRREFQQA+R+TLLSP +G
Sbjct:  134 EGDRFIPNRPSMNFDLCNHMLLSSDNSENEPQPGSDAPAPLRREFQQALRNTLLSPMSG 192

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BLAST of mRNA_H-paniculata_contig554.13025.1 vs. uniprot
Match: A0A6H5KEB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.770e-13
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 1

Query:  106 MDFNLCRHILLNNSNEENEPQAGSEAPAPLRREFQQAVRDTLLSPAAG 249
            M+F+LC H+LL++   ENEPQ GS+APAPLRREFQQA+R+TLLSP +G
Sbjct:    1 MNFDLCNHMLLSSDKSENEPQPGSDAPAPLRREFQQALRNTLLSPMSG 48

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig554.13025.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig554.13025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G9G0_ECTSI	1.740e-20	72.88	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KEB3_9PHAE	4.770e-13	68.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig554	contig	H-paniculata_contig554:9347..10619 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	105.9
Seed ortholog evalue	9.7e-21
Seed eggNOG ortholog	2880.D7G9G0
Preferred name	CDC20
KEGG ko	ko:K02084,ko:K03363,ko:K06709
KEGG Pathway	ko01524,ko04110,ko04111,ko04113,ko04114,ko04115,ko04120,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05166,ko05200,ko05203,ko05222,map01524,map04110,map04111,map04113,map04114,map04115,map04120,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05166,map05200,map05203,map05222
KEGG Module	M00389,M00685
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007143,GO:0007144,GO:0007147,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0007399,GO:0008022,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010646,GO:0010720,GO:0010939,GO:0010941,GO:0010975,GO:0015630,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019827,GO:0019899,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030162,GO:0030163,GO:0030718,GO:0031145,GO:0031323,GO:0031325,GO:0031344,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031915,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0036211,GO:0040020,GO:0042127,GO:0042826,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043902,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045664,GO:0045787,GO:0048167,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051445,GO:0051446,GO:0051603,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060547,GO:0060548,GO:0061630,GO:0061659,GO:0061982,GO:0061983,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090128,GO:0090129,GO:0090307,GO:0097150,GO:0098687,GO:0098727,GO:0098813,GO:0099177,GO:0120035,GO:0140013,GO:0140014,GO:0140096,GO:1900193,GO:1900195,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902494,GO:1902850,GO:1903046,GO:1903047,GO:1903320,GO:1903322,GO:1903429,GO:1903431,GO:1903538,GO:1904146,GO:1904666,GO:1904668,GO:1905879,GO:1905881,GO:1990234,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.	Cell division cycle
EggNOG OGs	COG2319@1,KOG0305@2759
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Exons	2
Model size	264
Cds size	264
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930581.1175528-CDS-H-paniculata_contig554:9346..9535	1622930581.1175528-CDS-H-paniculata_contig554:9346..9535	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig554 9347..9535 -
1691481357.7485626-CDS-H-paniculata_contig554:9346..9535	1691481357.7485626-CDS-H-paniculata_contig554:9346..9535	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig554 9347..9535 -
1622930581.1288238-CDS-H-paniculata_contig554:10544..10619	1622930581.1288238-CDS-H-paniculata_contig554:10544..10619	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig554 10545..10619 -
1691481357.7585835-CDS-H-paniculata_contig554:10544..10619	1691481357.7585835-CDS-H-paniculata_contig554:10544..10619	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig554 10545..10619 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig554.13025.1	prot_H-paniculata_contig554.13025.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig554 9347..10619 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig554:9347..10619-
coding sequence from alignment at H-paniculata_contig554:9347..10619-

protein sequence of mRNA_H-paniculata_contig554.13025.1

>prot_H-paniculata_contig554.13025.1 ID=prot_H-paniculata_contig554.13025.1|Name=mRNA_H-paniculata_contig554.13025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MLPAAPTPSRKLPRTPSTGGKKTNEGDRFIPNRNAMDFNLCRHILLNNSN
EENEPQAGSEAPAPLRREFQQAVRDTLLSPAAGTGTGG

mRNA from alignment at H-paniculata_contig554:9347..10619-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig554.13025.1 ID=mRNA_H-paniculata_contig554.13025.1|Name=mRNA_H-paniculata_contig554.13025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1273bp|location=Sequence derived from alignment at H-paniculata_contig554:9347..10619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACCCGCGGCCCCCACCCCATCGCGCAAGCTCCCTCGCACGCCGAG
CACTGGAGGAAAGAAGACGAACGAGGTTCGTTTCAGAGTCGTTTGGTCTT
TTTTTTAGCTGAGGGAGGTCAAGGTTGGAGGAGGGCGCATACAGATGCCT
TGAATATCGCAATTCTTGAAACCATCGGTCACGCGTCCTTGGGAGGACGG
GTAGGTTGTAATCGCAACTAGATAGTGGATGGCCTGTCGTCTGGATGGAC
TGTGTACGTATTCGGCTTGATGACTGATGAGTGTATTCTAGTGGTATTTT
TTCCCTTCCGAAGTACATGCAGGTTGAGGTTTGCTCATCAGGAACAGGAT
TCAACTATCTATGCTCGATTAAGCATGTGCATTGGTGGATGTCGTGGCGT
AGAGGTGGGACAAGTTTTTAATGTGTAGGTCGTCATACACCACCTTGACT
TCCAACGTAATATCTGTGACAAGATTTGAATTTTTCAGTGTTCGTACCGC
TTGCAGGCACTGCTCGCTAGAGTCGGGTTATTTTTACACGGCTATTTGAA
TTGGATTGCGATTTCAACCGCTCGGTTTGACTGACGATGACTTTTGTAGT
ACATGTGACTCATGGGTTCTATCATGCAGCCCACGGTCTGTGCTTAACCC
ATGTACCACATTTAGCCGCTACTACAAACTGCAGGCACCGTTTTCGTCAA
AATATGTGCATGGAATTCACTCGAGAACACGAGCGGAAAATTTCGACAGC
TTAGGGATCCTAGCGTACGAAACCATGAGACCGATTCGAGTTTTTACTCT
CGTGAGATTTTGTTTCAGAATCCCTCATTTTTATTTTTTATTGTTTCGAA
ACGCCGCATCCTAGTCTGGAGAAAGGCGTCATTCACAGTCATGCCTTGAT
AACCCAAGGTATAGTGGTCGCCGTCGACTTCTTAGCAGAATATTTATCCA
ATTTTATACTTGTAATTTATGACTTTTATTCGAGTGTAGCTATTACGGCG
TAGGTATGGTCCCGTACCACTACTTGTACGTGAGGTTATGGTTATTATTT
ATGAGTAATACGTGTGTGGAACTTGGAAAAACAGGGAGATCGCTTCATCC
CGAACCGCAACGCCATGGACTTCAACCTTTGCCGCCACATCCTCCTCAAC
AACTCCAACGAGGAAAATGAGCCGCAGGCGGGATCGGAAGCCCCTGCTCC
CCTTCGCCGCGAATTCCAGCAAGCTGTGAGGGACACCCTTCTGAGCCCCG
CTGCGGGCACCGGCACGGGCGGC

Coding sequence (CDS) from alignment at H-paniculata_contig554:9347..10619-

>mRNA_H-paniculata_contig554.13025.1 ID=mRNA_H-paniculata_contig554.13025.1|Name=mRNA_H-paniculata_contig554.13025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig554:9347..10619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTACCCGCGGCCCCCACCCCATCGCGCAAGCTCCCTCGCACGCCGAG
CACTGGAGGAAAGAAGACGAACGAGATGCTACCCGCGGCCCCCACCCCAT
CGCGCAAGCTCCCTCGCACGCCGAGCACTGGAGGAAAGAAGACGAACGAG
GGAGATCGCTTCATCCCGAACCGCAACGCCATGGACTTCAACCTTTGCCG
CCACATCCTCCTCAACAACTCCAACGAGGAAAATGAGCCGCAGGCGGGAT
CGGAAGCCCCTGCTCCCCTTCGCCGCGAATTCCAGCAAGCTGTGAGGGAC
ACCCTTCTGAGCCCCGCTGCGGGCACCGGCACGGGCGGCGGAGATCGCTT
CATCCCGAACCGCAACGCCATGGACTTCAACCTTTGCCGCCACATCCTCC
TCAACAACTCCAACGAGGAAAATGAGCCGCAGGCGGGATCGGAAGCCCCT
GCTCCCCTTCGCCGCGAATTCCAGCAAGCTGTGAGGGACACCCTTCTGAG
CCCCGCTGCGGGCACCGGCACGGGCGGC