mRNA_H-paniculata_contig554.13023.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig554.13023.1
Unique NamemRNA_H-paniculata_contig554.13023.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig554.13023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig554contigH-paniculata_contig554:274..830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig554.13023.1prot_H-paniculata_contig554.13023.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig554 307..678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930580.9200506-UTR-H-paniculata_contig554:273..3061622930580.9200506-UTR-H-paniculata_contig554:273..306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig554 274..306 +
1691481357.6448457-UTR-H-paniculata_contig554:273..3061691481357.6448457-UTR-H-paniculata_contig554:273..306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig554 274..306 +
1622930580.946893-UTR-H-paniculata_contig554:678..8301622930580.946893-UTR-H-paniculata_contig554:678..830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig554 679..830 +
1691481357.6658359-UTR-H-paniculata_contig554:678..8301691481357.6658359-UTR-H-paniculata_contig554:678..830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig554 679..830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930580.932952-CDS-H-paniculata_contig554:306..6781622930580.932952-CDS-H-paniculata_contig554:306..678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig554 307..678 +
1691481357.6561072-CDS-H-paniculata_contig554:306..6781691481357.6561072-CDS-H-paniculata_contig554:306..678Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig554 307..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig554.13023.1

>prot_H-paniculata_contig554.13023.1 ID=prot_H-paniculata_contig554.13023.1|Name=mRNA_H-paniculata_contig554.13023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MGRPFNNCQSTRNKRQFPIGCMSSPFHIQTRSTPKGRNKNRVANTVCTVS
REMGRGARKDARMNEVCSTVTAQQHDTTIGAAYLTPSSLLSSMLGLYHFI
FTVSEMLPSKSLVKTTTDLHPNG*
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mRNA from alignment at H-paniculata_contig554:274..830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig554.13023.1 ID=mRNA_H-paniculata_contig554.13023.1|Name=mRNA_H-paniculata_contig554.13023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at H-paniculata_contig554:274..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCCACCCTTTGCTCGCCAACAGCCACCACCATGGGAAGGCCTTTTAA
TAACTGCCAGAGCACACGCAACAAGAGACAGTTTCCAATTGGATGCATGT
CCAGTCCCTTTCACATCCAGACTCGCTCCACACCTAAAGGAAGGAACAAG
AATCGAGTAGCTAACACGGTTTGTACTGTGTCGAGAGAGATGGGCAGGGG
GGCGAGGAAGGACGCAAGAATGAACGAAGTTTGTAGCACCGTTACGGCAC
AGCAACACGATACGACCATAGGGGCAGCCTACCTTACACCTTCGTCACTG
CTTTCTTCGATGCTTGGGCTGTACCACTTCATCTTCACGGTGTCGGAAAT
GTTGCCCTCAAAATCTTTGGTGAAAACAACCACGGACCTACACCCGAACG
GGTAGGGTAGCTCGTGAACAGAACATGACTGGAAGTCTAGTCAGAGGTCT
TTTAGTGGGTGCATCCCCACACTGCCTACTCGGTTCAGCCAAACCGGGGT
GGCGCCTACCCCGCAGATGAATAAATAACTCTGTTCTGTGTAAGAAATTG
TAGAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig554:274..830+

>mRNA_H-paniculata_contig554.13023.1 ID=mRNA_H-paniculata_contig554.13023.1|Name=mRNA_H-paniculata_contig554.13023.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig554:274..830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAGGCCTTTTAATAACTGCCAGAGCACACGCAACAAGAGACAGTT
TCCAATTGGATGCATGTCCAGTCCCTTTCACATCCAGACTCGCTCCACAC
CTAAAGGAAGGAACAAGAATCGAGTAGCTAACACGGTTTGTACTGTGTCG
AGAGAGATGGGCAGGGGGGCGAGGAAGGACGCAAGAATGAACGAAGTTTG
TAGCACCGTTACGGCACAGCAACACGATACGACCATAGGGGCAGCCTACC
TTACACCTTCGTCACTGCTTTCTTCGATGCTTGGGCTGTACCACTTCATC
TTCACGGTGTCGGAAATGTTGCCCTCAAAATCTTTGGTGAAAACAACCAC
GGACCTACACCCGAACGGGTAGATGGGAAGGCCTTTTAATAACTGCCAGA
GCACACGCAACAAGAGACAGTTTCCAATTGGATGCATGTCCAGTCCCTTT
CACATCCAGACTCGCTCCACACCTAAAGGAAGGAACAAGAATCGAGTAGC
TAACACGGTTTGTACTGTGTCGAGAGAGATGGGCAGGGGGGCGAGGAAGG
ACGCAAGAATGAACGAAGTTTGTAGCACCGTTACGGCACAGCAACACGAT
ACGACCATAGGGGCAGCCTACCTTACACCTTCGTCACTGCTTTCTTCGAT
GCTTGGGCTGTACCACTTCATCTTCACGGTGTCGGAAATGTTGCCCTCAA
AATCTTTGGTGAAAACAACCACGGACCTACACCCGAACGGGTAG
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