mRNA_H-paniculata_contig5539.13021.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI00104066C4 (uncharacterized protein LOC114370211 n=1 Tax=Glycine soja TaxID=3848 RepID=UPI00104066C4) HSP 1 Score: 70.5 bits (171), Expect = 3.570e-10 Identity = 58/203 (28.57%), Postives = 96/203 (47.29%), Query Frame = 3
Query: 108 PIKVHHKSH-ISKVMFIYAVSRP----DPNNGFTGTIGIWRVTVIKEA*RSTAHRE-------------RD--DEW---GVFPTFEEKMPWLE--EKMVVQKLNL-------------TGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGND 602
P++ SH I KVMF+ A+ P + N F+G +G+W + A R + +RE RD +W V P + P E + +Q+ N G ++G+NI+L+ QPA LNI +LGFF++++S + R + +D L+E K + +Y +E VW L ++LK +EG++
Sbjct: 45 PLRQCQSSHYIGKVMFLVAMGCPKFDNEGNEIFSGKVGVWPFVTREPALRISVNREVGTLVMKPITSVNRDINRKWLIEKVIPKIQSCWPREELGSAIFIQQDNARSHVDPNDEDIIRVGTQNGFNIRLMCQPANSPDLNILDLGFFSAIQSLQQKVRANSVDELIEAVKKSFDEYPTKKVEYVWLTLQLCMREILK-VEGSN 246
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI000B8AF499 (uncharacterized protein LOC110800263 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AF499) HSP 1 Score: 65.5 bits (158), Expect = 2.170e-8 Identity = 53/212 (25.00%), Postives = 94/212 (44.34%), Query Frame = 3
Query: 126 KSHISKVMFIYAVSRPDPNNG----FTGTIGIWRVTVIKEA*RSTAHRER---------------------DDEWGVFPTFEEKMP-------WLEEKMVVQKLNLTGRE-------DGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTGSRKSQPI 644
K ISKVMF V+RP ++ + G IGI A R++ +R++ +D + P + K P W+++ ++ RE DG+NI+LV QPAQ +NI +LGFF +++S ++ + +L+E ++ Y D+ + W +L ++L+ GN+ H G +K + +
Sbjct: 54 KRFISKVMFSSGVARPHISSDGIVLWDGKIGITPFVEDVAAIRNSKNRDKGTIETKALQSITKEVIRSKMIED---LLPAIKSKWPSNACKDIWIQQDNARPHISPNDREFLEAATQDGFNIRLVNQPAQSPDMNILDLGFFRAIQSIQYKSFPDSVTSLIEAVENAYIALDSKAMNFTWMHLKYCMIEILQVQGGNNYKNPHKGKKKLERL 262
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI00053F7236 (uncharacterized protein LOC104908485 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7236) HSP 1 Score: 63.5 bits (153), Expect = 7.270e-8 Identity = 38/150 (25.33%), Postives = 72/150 (48.00%), Query Frame = 3
Query: 279 VFPTFEEKMP-WLEEKMVVQKLNLTGR-------------EDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTGSRKSQPIDRAAYETVFNWRID 686
VFP K P L +++ +Q+ N ++G+NIKL+ QPAQ LN+ +LGFF ++++ +++ +D L+E + Y ++D + ++ W L ++LK GN+ H G + + + F+ +D
Sbjct: 110 VFPAIMSKWPAGLSKEIFIQQDNARAHIQGNDEAFKAAATQNGFNIKLIQQPAQSPDLNVLDLGFFRAIQALMYQTFPKNIDELIENVQDAYDKFDPNVVKYTWLKLHWVMVEILKVKGGNNYKNPHHGKARLERLGLLPKNVQFDQIVD 259
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: A0A484N8H9_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N8H9_9ASTE) HSP 1 Score: 63.5 bits (153), Expect = 1.700e-7 Identity = 55/201 (27.36%), Postives = 83/201 (41.29%), Query Frame = 3
Query: 126 KSHISKVMFIYAVSRPDPNNG----FTGTIGIWRVTVIKEA*RSTAHR-------------ERDDEWGVF-----PTFEEKMPWLEEKMVVQKLNL-------------TGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTG 623
KSHI K+MF+ AVSRP N + G IGI+ T +A RS+ +R RD+ + P +EK P +++Q+ N +E WNIKL QP LN+ +LG+F S + + L+ L+ + + L V+ +VLK GN+ + H G
Sbjct: 242 KSHIPKIMFLAAVSRPRFGNDGAVVWDGKIGIFPFTYEAQAKRSSKNRPAGTLEVKATTSINRDEIKKMLLEKLLPAIKEKWPGPTRDVIIQQDNAKPHVDVNDTDFVQAAQEGNWNIKLQFQPPNSPDLNVLDLGYFRSFDTIQDQAAPRKLEELINAVTKSFEDLTPEKLNNVFLTCQSVMGEVLKHKGGNNFKIPHIG 442
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67) HSP 1 Score: 61.2 bits (147), Expect = 5.780e-7 Identity = 29/96 (30.21%), Postives = 54/96 (56.25%), Query Frame = 3
Query: 357 EDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTGSRKSQPI 644
+DG+NI+L+ QPAQ +N+ +LGFF +++ ++E +D L++ K Y +D +L W +L ++L+ GN+ H G R+ + +
Sbjct: 167 KDGFNIRLINQPAQSPDMNVLDLGFFRTIQLIQYKEFPKSVDELIKEVKDAYNIFDPKSLNYTWLHLQYCMLEILQVNGGNNYKNPHKGKRRLESM 262
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI00053F3BA8 (uncharacterized protein LOC104908869 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F3BA8) HSP 1 Score: 60.1 bits (144), Expect = 1.820e-6 Identity = 52/207 (25.12%), Postives = 91/207 (43.96%), Query Frame = 3
Query: 126 KSHISKVMFIYAVSRPDPNNG----FTGTIGIWRVTVIKEA*RSTAHRERDDE------------------WGVFPTFEEKMP-------WLEEKMVVQKLNLTGRE-------DGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTGSRKSQ 638
K I KVMF +SRP + + G IGI+ A R + +RE V P ++K P W+++ ++ T + DG+N++LV QPAQ LN+ +LGFF +++S ++ +D L++V ++ Y +YD ++ +L +VLK N+ + H G ++ +
Sbjct: 142 KRFIVKVMFEGVMSRPHITSEGVSIWDGKIGIYPFVDKVPAKRRSNNREAGTLETKPITSITKEVMRQKLIQSVIPAIKQKWPPYACKDIWIQQDNARPHIDSTDADFIEAATSDGFNMRLVNQPAQSPDLNVLDLGFFNAIQSLKDQKAPKTVDKLIKVVQAAYDEYDPKLGNRIFLSLQYCMIEVLKLKGNNNYNPPHVGKQRME 348
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI000B792FE7 (uncharacterized protein LOC110719242 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B792FE7) HSP 1 Score: 58.5 bits (140), Expect = 2.880e-6 Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 3
Query: 360 DGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGN 599
DG+NI+L+ QPAQ LNI +LGFF +++S ++E L+ L++ ++ Y YD +L W + ++LK GN
Sbjct: 148 DGFNIRLINQPAQSPDLNILDLGFFRAVQSIQYKEFPRSLEELLQAIENAYNTYDPKSLNFTWLHTQYCMLEILKVNGGN 227
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI000DF4E7C4 (uncharacterized protein LOC112889894 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4E7C4) HSP 1 Score: 59.7 bits (143), Expect = 3.180e-6 Identity = 50/202 (24.75%), Postives = 86/202 (42.57%), Query Frame = 3
Query: 123 HKSHISKVMFIYAVSRP----DPNNGFTGTIGIWRVTVIKEA*RSTAHRERDD---------EWGV---------FPTFEEKMP--------WLEEKMVVQKLNL-------TGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKH 617
+K+ I K+MF+ A++RP + N F G IG + + A RS+ +R GV P EK P ++++ +N ++DG++I+L+ QPA LNI +LGFF S++S ++ + LV + Y L ++ + N+V+K GN+ + H
Sbjct: 265 NKNFIPKIMFLCALARPRFDSEGNCTFDGKIGCFPFVTYEPAKRSSKNRPAGTIELKPMDTVRMGVSREYLVKKIIPAIREKWPPEDVHSPIYIQQDNAPSHVNPDDIIFCEAAKKDGFDIRLMLQPANSPDLNICDLGFFNSIQSIQYKTSSKSTEELVSAVLEAFADYPPSKLNRIFLSFHACMNEVIKIGGGNEYKVPH 466
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: UPI000DF4D55F (uncharacterized protein LOC112902865 n=2 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4D55F) HSP 1 Score: 59.7 bits (143), Expect = 3.650e-6 Identity = 50/202 (24.75%), Postives = 86/202 (42.57%), Query Frame = 3
Query: 123 HKSHISKVMFIYAVSRP----DPNNGFTGTIGIWRVTVIKEA*RSTAHRERDD---------EWGV---------FPTFEEKMP--------WLEEKMVVQKLNL-------TGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKH 617
+K+ I K+MF+ A++RP + N F G IG + + A RS+ +R GV P EK P ++++ +N ++DG++I+L+ QPA LNI +LGFF S++S ++ + LV + Y L ++ + N+V+K GN+ + H
Sbjct: 422 NKNFIPKIMFLCALARPRFDSEGNCTFDGKIGYFPFVTYEPAKRSSKNRPAGTIELKPMDTVRMGVSREYLVKKIIPAIREKWPPEDVHSPIYIQQDNAPSHVNPDDIIFCEAAKKDGFDIRLMLQPANSPDLNICDLGFFNSIQSIQYKTSSKSTEELVSAVLEAFADYPPSKLNRIFLSFHACMNEVIKIGGGNEYKVPH 623
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Match: Q49KC8_PEA (Transposase n=2 Tax=Pisum sativum TaxID=3888 RepID=Q49KC8_PEA) HSP 1 Score: 58.9 bits (141), Expect = 4.850e-6 Identity = 50/210 (23.81%), Postives = 91/210 (43.33%), Query Frame = 3
Query: 126 KSHISKVMFIYAVSRP----DPNNGFTGTIGIWRVTVIKEA*RSTAHR-------------ERDDEWG-----VFPTFEEKMPW--LEEKMVVQKLNL-------------TGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRLWRERYHMLDALVEVAKSMYGQYDADTLELVWQNLFKWYNQVLKALEGNDLDMKHTGSRKSQPI 644
K+ I+KVMF+ A +RP + N F+G IG++ + A RS+ +R RD V P EK P E + +Q+ N +DG++I+L+ QPA LNI +LGFF++++S ++E +D L+ + + + ++ +L +++K N + H + + +
Sbjct: 179 KNFIAKVMFLVAQTRPRFDSEENETFSGKIGVFPFVTHEPAIRSSINRVAGTMVTKAITTVNRDVVRSFLIDKVLPAIREKWPRDEFESTIFIQQDNARTHINHDDPLFREAATKDGFDIRLMCQPANSPDLNILDLGFFSAIQSLQYKEAPKTIDELISAVVKSFENFPSIKSNRIFVSLQLCMIEIMKEKGSNKYKIPHVNKERLERV 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5539.13021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5539.13021.1 >prot_H-paniculata_contig5539.13021.1 ID=prot_H-paniculata_contig5539.13021.1|Name=mRNA_H-paniculata_contig5539.13021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp MPWLEEKMVVQKLNLTGREDGWNIKLVTQPAQFHGLNIKNLGFFTSLKSRback to top mRNA from alignment at H-paniculata_contig5539:4832..5908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5539.13021.1 ID=mRNA_H-paniculata_contig5539.13021.1|Name=mRNA_H-paniculata_contig5539.13021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-paniculata_contig5539:4832..5908- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5539:4832..5908- >mRNA_H-paniculata_contig5539.13021.1 ID=mRNA_H-paniculata_contig5539.13021.1|Name=mRNA_H-paniculata_contig5539.13021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig5539:4832..5908- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |