prot_H-paniculata_contig5531.13014.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5531.13014.1
Unique Nameprot_H-paniculata_contig5531.13014.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length467
Homology
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BLAST of mRNA_H-paniculata_contig5531.13014.1 vs. uniprot
Match: A0A6H5KYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD8_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.710e-14
Identity = 54/165 (32.73%), Postives = 78/165 (47.27%), Query Frame = 0 
Query:   25 AGLAVAVGAAPNGGVNEGRWNGPTKPLPGKSV---ENCSLRVTLSGDDGVRYNEEACKGGAAKCGKPSISPGKEKGFVQVFVGSTPKNTGIA--KHAGTSAWREAIEFDCVDERDPMVLTLFGESTRILASCEVRRTKELLGGEERLCSGPDGAQFFYTVEHSNI 184
            AG A+A+G    G  +          LP  +    + C   VT+ G+      E+   G A  C K S S   ++  VQ  VGS  K  G+   + AG+  WR+ ++F CVD RD +V+TL+    R LA+CEV  T  +   +   C G  G  F Y VEH+ +
Sbjct:   25 AGRALALGLTIGGWASSQGLTAAASDLPAAAAAGSQECGFIVTMWGESAAC--EQQLDGAAVGCDKKSFSRRADR--VQALVGSVRKEAGLGPVREAGSPVWRQVLDFGCVDGRDKLVVTLYDNLMRPLATCEVGETASIESSKAMGCEGAHGMHFKYAVEHTAL 185
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BLAST of mRNA_H-paniculata_contig5531.13014.1 vs. uniprot
Match: D8LQ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ65_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.200e-12
Identity = 53/155 (34.19%), Postives = 75/155 (48.39%), Query Frame = 0 
Query:   11 RQRKMGATTGALVLAGLAVAVGAAPNGGVNEGRWNGPTKPLPGKSVENCSLRVTLSGDDGVRYNEEACKGGAAKCGKPSISPGKEKGFVQVFVGSTPKNTGIA--KHAGTSAWREAIEFDCVDERDPMVLTLFGESTRILASCEVRRTKELLGGE 163
            R+ KMG    AL L GL +  G A + G+     + P         + C   VT+ G+      E+   G A  C K S S   ++  VQ  VGS PK  G+   + AG+S WR+ + F CVD RD +V++L+    R LA+CEV     +  GE
Sbjct:   10 RRGKMGGAARALAL-GLTIG-GWASSQGLAAAASHLPAAAAAAAGSQECGFIVTMWGESAAC--EQQLDGAAVGCDKKSFSRRADR--VQALVGSVPKEAGLGPVREAGSSEWRQVLNFGCVDGRDKLVVSLYDNLMRPLATCEVGTVNPVYCGE 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5531.13014.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYD8_9PHAE5.710e-1432.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ65_ECTSI4.200e-1234.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..467
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..33
score: 0.612
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5531contigH-paniculata_contig5531:3217..12677 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5531.13014.1mRNA_H-paniculata_contig5531.13014.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5531 3217..12688 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5531.13014.1 ID=prot_H-paniculata_contig5531.13014.1|Name=mRNA_H-paniculata_contig5531.13014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=467bp
MLRAPRSARGRQRKMGATTGALVLAGLAVAVGAAPNGGVNEGRWNGPTKP
LPGKSVENCSLRVTLSGDDGVRYNEEACKGGAAKCGKPSISPGKEKGFVQ
VFVGSTPKNTGIAKHAGTSAWREAIEFDCVDERDPMVLTLFGESTRILAS
CEVRRTKELLGGEERLCSGPDGAQFFYTVEHSNISSVATAEDRSEKADWV
ASRLLQVDTLTPTTADFTINPATSEPQEGGTPEPTPLPTEQTTLPTAEPI
VEEVPTSVPETQPPVPVTPPPTPLAPLELTALPTVATPEPITPEPTAPEP
TTPEPTTPEPTTPEPQTEPPVTVTPKPTLEPDTVAPLGTPLPTLQPTPEP
VPVTDAPSPETEMTDAPMVAPTSAEPATLAPIVKVTQAPSTPPPVGTPPQ
QITVEPTLVPKEITTTTEPSSPPTPIPTTPPTPAVEPTANPVVSTAPETR
IPVTVTTSPVEPMPAPT
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