mRNA_H-paniculata_contig55309.13012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55309.13012.1
Unique NamemRNA_H-paniculata_contig55309.13012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55309.13012.1 vs. uniprot
Match: K0T2L0_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T2L0_THAOC)

HSP 1 Score: 52.0 bits (123), Expect = 1.650e-5
Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:   40 DTGATDHMTSDETAFEDYTSVLPGTMCEIANGTFVPVEGWGRLVLRVSQPGEKSRVAMLNRVAHVPELGRNLISTR 267
            D+GATDHM  D +AF  Y  V  G    + N  FVPV G G  V  ++      +  M+  V HVP+LGR L S R
Sbjct:  991 DSGATDHMVPDRSAFYSYRPVH-GLRVRMGNNAFVPVVGRGTAVFSLN-----GKHVMIRNVMHVPDLGRPLYSLR 1060
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BLAST of mRNA_H-paniculata_contig55309.13012.1 vs. uniprot
Match: K0R6M9_THAOC (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6M9_THAOC)

HSP 1 Score: 52.0 bits (123), Expect = 1.670e-5
Identity = 32/76 (42.11%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:   40 DTGATDHMTSDETAFEDYTSVLPGTMCEIANGTFVPVEGWGRLVLRVSQPGEKSRVAMLNRVAHVPELGRNLISTR 267
            D+GATDHM  D +AF  Y  V  G    + N  FVPV G G  V  ++      +  M+  V HVP+LGR L S R
Sbjct:  217 DSGATDHMVPDRSAFYSYRPVH-GLRVRMGNNAFVPVVGRGTAVFSLN-----GKHVMIRNVMHVPDLGRPLYSLR 286
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BLAST of mRNA_H-paniculata_contig55309.13012.1 vs. uniprot
Match: K0S446_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S446_THAOC)

HSP 1 Score: 50.4 bits (119), Expect = 5.300e-5
Identity = 31/76 (40.79%), Postives = 39/76 (51.32%), Query Frame = 1 
Query:   40 DTGATDHMTSDETAFEDYTSVLPGTMCEIANGTFVPVEGWGRLVLRVSQPGEKSRVAMLNRVAHVPELGRNLISTR 267
            D+GATDHM  D +AF  Y  V  G    + N  FVPV G G  V  ++      +  M+    HVP+LGR L S R
Sbjct:  126 DSGATDHMVPDRSAFYSYRPVH-GLRVRMGNNAFVPVVGRGTAVFSLN-----GKHVMIRNAMHVPDLGRPLYSLR 195
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BLAST of mRNA_H-paniculata_contig55309.13012.1 vs. uniprot
Match: UPI0007AF99E3 (uncharacterized protein LOC107611507 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI0007AF99E3)

HSP 1 Score: 50.1 bits (118), Expect = 7.520e-5
Identity = 28/81 (34.57%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:   40 DTGATDHMTSDETAFEDYTSVLPGTMCEIANGTFVPVEGWGRLVLRVSQPGEKSRVAMLNRVAHVPELGRNLISTRRATDT 282
            D+GATD+MT    +F  YT+        +ANG+ +P+ G+G + L+ S          L  V HVP+L  NL+S  +   T
Sbjct:  219 DSGATDYMTPHSLSFSSYTNSYGHKQITVANGSHIPITGYGNIHLQPS--------IHLKNVLHVPKLSTNLMSIHKDLTT 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55309.13012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
K0T2L0_THAOC1.650e-542.11Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0R6M9_THAOC1.670e-542.11Integrase catalytic domain-containing protein (Fra... [more]
K0S446_THAOC5.300e-540.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
UPI0007AF99E37.520e-534.57uncharacterized protein LOC107611507 n=1 Tax=Arach... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55309contigH-paniculata_contig55309:13..315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930579.7124314-CDS-H-paniculata_contig55309:12..3151622930579.7124314-CDS-H-paniculata_contig55309:12..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55309 13..315 -
1691481357.0850317-CDS-H-paniculata_contig55309:12..3151691481357.0850317-CDS-H-paniculata_contig55309:12..315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55309 13..315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55309.13012.1prot_H-paniculata_contig55309.13012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55309 13..315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55309.13012.1

>prot_H-paniculata_contig55309.13012.1 ID=prot_H-paniculata_contig55309.13012.1|Name=mRNA_H-paniculata_contig55309.13012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
HRGEDYWGAKGDSDTGATDHMTSDETAFEDYTSVLPGTMCEIANGTFVPV
EGWGRLVLRVSQPGEKSRVAMLNRVAHVPELGRNLISTRRATDTFGKSFI
Y
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mRNA from alignment at H-paniculata_contig55309:13..315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55309.13012.1 ID=mRNA_H-paniculata_contig55309.13012.1|Name=mRNA_H-paniculata_contig55309.13012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at H-paniculata_contig55309:13..315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGCGGTGAGGATTACTGGGGCGCCAAAGGGGACTCAGACACGGGCGC
GACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACCTCAG
TGCTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTA
GAGGGGTGGGGACGTCTTGTGCTTCGAGTAAGTCAACCAGGGGAAAAATC
ACGGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTTGGGCGCA
ATTTAATCTCCACACGCCGAGCAACAGATACATTCGGTAAATCATTCATA
TAC
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Coding sequence (CDS) from alignment at H-paniculata_contig55309:13..315-

>mRNA_H-paniculata_contig55309.13012.1 ID=mRNA_H-paniculata_contig55309.13012.1|Name=mRNA_H-paniculata_contig55309.13012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig55309:13..315- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGCGGTGAGGATTACTGGGGCGCCAAAGGGGACTCAGACACGGGCGC
GACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACCTCAG
TGCTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCGGTA
GAGGGGTGGGGACGTCTTGTGCTTCGAGTAAGTCAACCAGGGGAAAAATC
ACGGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTTGGGCGCA
ATTTAATCTCCACACGCCGAGCAACAGATACATTCGGTAAATCATTCATA
TACCATCGCGGTGAGGATTACTGGGGCGCCAAAGGGGACTCAGACACGGG
CGCGACAGACCACATGACGTCGGATGAGACTGCGTTCGAGGACTACACCT
CAGTGCTCCCGGGGACCATGTGTGAAATCGCCAACGGGACATTCGTGCCG
GTAGAGGGGTGGGGACGTCTTGTGCTTCGAGTAAGTCAACCAGGGGAAAA
ATCACGGGTAGCAATGTTAAACAGGGTTGCCCACGTACCCGAGCTTGGGC
GCAATTTAATCTCCACACGCCGAGCAACAGATACATTCGGTAAATCATTC
ATATAC
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