mRNA_H-paniculata_contig5528.13009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5528.13009.1
Unique NamemRNA_H-paniculata_contig5528.13009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5528.13009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5528contigH-paniculata_contig5528:11907..12383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size478
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.9356122-CDS-H-paniculata_contig5528:11906..122121622930578.9356122-CDS-H-paniculata_contig5528:11906..12212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 11907..12212 +
1691481356.7335062-CDS-H-paniculata_contig5528:11906..122121691481356.7335062-CDS-H-paniculata_contig5528:11906..12212Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 11907..12212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.9703426-UTR-H-paniculata_contig5528:12212..123831622930578.9703426-UTR-H-paniculata_contig5528:12212..12383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5528 12213..12383 +
1691481356.745261-UTR-H-paniculata_contig5528:12212..123831691481356.745261-UTR-H-paniculata_contig5528:12212..12383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5528 12213..12383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5528.13009.1prot_H-paniculata_contig5528.13009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5528 11907..12212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5528.13009.1

>prot_H-paniculata_contig5528.13009.1 ID=prot_H-paniculata_contig5528.13009.1|Name=mRNA_H-paniculata_contig5528.13009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
PHRVPPFPGAVHPLPKLGLQQRRSPHCANHHLPNAHGSPSPHPLSSALHL
LNSPPPRILLPPHPLALDHYQSPRSTFSLPRPTAPPYREHLQSWSCLLRR
L*
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mRNA from alignment at H-paniculata_contig5528:11907..12383+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5528.13009.1 ID=mRNA_H-paniculata_contig5528.13009.1|Name=mRNA_H-paniculata_contig5528.13009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=477bp|location=Sequence derived from alignment at H-paniculata_contig5528:11907..12383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCATCGTGTTCCCCCTTTCCCGGGTGCCGTCCATCCCTTGCCAAAGCT
CGGTCTGCAGCAGCGACGCTCTCCGCACTGCGCGAATCATCATCTCCCAA
ATGCGCACGGCTCTCCTTCTCCGCATCCTCTTTCTTCCGCCCTCCATCTT
CTAAATTCCCCACCGCCGCGAATCCTCCTTCCTCCTCATCCCTTGGCCCT
GGATCACTACCAGTCCCCGCGCTCCACCTTCTCCCTACCCCGCCCCACCG
CGCCGCCGTACCGTGAGCACCTTCAGTCCTGGTCATGCCTTCTACGCCGT
CTGTAGGTCCCTCCGCCGCCTTCCCGACATCATCAACACCACCACTACTA
TTACTACGACTACCTGCCGTGCTACTGCCGCCGCCGAATCGCGTTGTCTC
AGACTGTAAATCATGTTCTGGTGTGGGCGCGGGATCTACCGGTGATTTGG
GGGTACATTTCTTAGTTACGATCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5528:11907..12383+

>mRNA_H-paniculata_contig5528.13009.1 ID=mRNA_H-paniculata_contig5528.13009.1|Name=mRNA_H-paniculata_contig5528.13009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig5528:11907..12383+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCATCGTGTTCCCCCTTTCCCGGGTGCCGTCCATCCCTTGCCAAAGCT
CGGTCTGCAGCAGCGACGCTCTCCGCACTGCGCGAATCATCATCTCCCAA
ATGCGCACGGCTCTCCTTCTCCGCATCCTCTTTCTTCCGCCCTCCATCTT
CTAAATTCCCCACCGCCGCGAATCCTCCTTCCTCCTCATCCCTTGGCCCT
GGATCACTACCAGTCCCCGCGCTCCACCTTCTCCCTACCCCGCCCCACCG
CGCCGCCGTACCGTGAGCACCTTCAGTCCTGGTCATGCCTTCTACGCCGT
CTGTAGCCTCATCGTGTTCCCCCTTTCCCGGGTGCCGTCCATCCCTTGCC
AAAGCTCGGTCTGCAGCAGCGACGCTCTCCGCACTGCGCGAATCATCATC
TCCCAAATGCGCACGGCTCTCCTTCTCCGCATCCTCTTTCTTCCGCCCTC
CATCTTCTAAATTCCCCACCGCCGCGAATCCTCCTTCCTCCTCATCCCTT
GGCCCTGGATCACTACCAGTCCCCGCGCTCCACCTTCTCCCTACCCCGCC
CCACCGCGCCGCCGTACCGTGAGCACCTTCAGTCCTGGTCATGCCTTCTA
CGCCGTCTGTAG
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