mRNA_H-paniculata_contig55276.13007.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55276.13007.1
Unique NamemRNA_H-paniculata_contig55276.13007.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A5D6YIN1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIN1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.960e-8
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALNTAHQARL 201
            L+  L A   F  A + W NGTVE +NR+V+   +A+L E  L   EWP  +P+VQ+ LN    A L
Sbjct:  485 LSVKLKARQEFVPAYTPWKNGTVERLNRDVLQVIRALLLEFKLDTKEWPFLLPLVQFNLNHTQVASL 551
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A485LNC8_9STRA (Aste57867_23615 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNC8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.490e-8
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALNTAHQARL 201
            +A  L  +H+F +  S W NGT+E +NR+++   + +L E +L   EW   +PVVQ  LN    A L
Sbjct:  102 VAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLNQTPTASL 168
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A2P4X5B1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5B1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-7
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALNTAHQARL 201
            LA  L A H+F    + W NGTVE +NR+++   + +L E NL    WP  +P+VQ  LN +  A L
Sbjct:  793 LAERLKAVHKFVPVYTPWINGTVERVNRDILQVLRVILMEMNLDTRNWPYLLPLVQANLNHSAVASL 859
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A485LNJ2_9STRA (Aste57867_23616 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNJ2_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.050e-7
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALNTAHQARL 201
            +A  L  +H+F +  S W NGT+E +NR+++   + +L E +L   EW   +PVVQ  LN    A L
Sbjct: 1120 VAAKLKVDHKFTITYSPWRNGTIERLNRDILQVMRVLLKEYHLDEREWEYLLPVVQANLNQTPTASL 1186
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A6A3RM72_9STRA (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RM72_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-6
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALN 180
            L   L A+ +F +A + W NG++E +NR+++   KA++ E  +  ++WP  +P+VQ +LN
Sbjct:   55 LNRRLKAQQKFTLAYTPWKNGSIERVNRDIIQVLKALILELKVSAADWPYLLPLVQSSLN 114
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A6A3L5Z6_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3L5Z6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALN 180
            L   L A+ +F +A + W NG++E +NR+++   KA++ E  +  ++WP  +P+VQ +LN
Sbjct:  314 LNRRLKAQQKFTLAYTPWKNGSIERVNRDIIQVLKALILELKVSAADWPYLLPLVQSSLN 373
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: H3H9I0_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9I0_PHYRM)

HSP 1 Score: 52.8 bits (125), Expect = 1.780e-6
Identity = 23/60 (38.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALN 180
            LA  LGA H+F    + W NGTVE +NR+++   + +L E+ L    W   +P++Q  LN
Sbjct:   96 LAERLGASHQFAPVYTPWINGTVERVNRDILQVLRVMLLESRLDTRNWVYLLPIIQANLN 155
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A6A5AB39_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AB39_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.090e-6
Identity = 26/67 (38.81%), Postives = 33/67 (49.25%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALNTAHQARL 201
            LA      H   +A   W NGTVE MNR+++   + +L E  L   EW   +PVVQ  LN    A L
Sbjct:   68 LAHKFKVHHDLTLAYCPWRNGTVERMNRDILQVMRVMLREYQLAEQEWDYLLPVVQANLNQTPAASL 134
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A6G0K007_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6G0K007_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.340e-6
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALN 180
            L   L A+ +F +A + W NG+VE +NR+++   KA++ E  +  ++WP  +P+VQ ++N
Sbjct:  261 LNRRLKAQQKFTLAYTPWKNGSVERVNRDIIQVLKALILEFKVSAADWPYLLPLVQSSIN 320
[Close]
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Match: A0A6A3XJV5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XJV5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.390e-6
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPVAVPVVQWALN 180
            L   L A+ +F +A + W NG+VE +NR+++   KA++ E  +  ++WP  +P+VQ ++N
Sbjct: 1145 LNRRLKAQQKFTLAYTPWKNGSVERVNRDIIQVLKALILEFKVSAADWPYLLPLVQSSIN 1204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55276.13007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YIN1_9STRA2.960e-841.79Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485LNC8_9STRA9.490e-837.31Aste57867_23615 protein n=1 Tax=Aphanomyces stella... [more]
A0A2P4X5B1_9STRA1.040e-740.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A485LNJ2_9STRA1.050e-737.31Aste57867_23616 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3RM72_9STRA1.150e-635.00Integrase catalytic domain-containing protein n=4 ... [more]
A0A6A3L5Z6_9STRA1.250e-635.00Integrase catalytic domain-containing protein n=3 ... [more]
H3H9I0_PHYRM1.780e-638.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A5AB39_9STRA2.090e-638.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0K007_9STRA2.340e-635.00Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A6A3XJV5_9STRA2.390e-635.00Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55276contigH-paniculata_contig55276:897..1097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.8e-10
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.7889657-CDS-H-paniculata_contig55276:896..10971622930578.7889657-CDS-H-paniculata_contig55276:896..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55276 897..1097 -
1691481356.686047-CDS-H-paniculata_contig55276:896..10971691481356.686047-CDS-H-paniculata_contig55276:896..1097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55276 897..1097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55276.13007.1prot_H-paniculata_contig55276.13007.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55276 897..1097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55276.13007.1

>prot_H-paniculata_contig55276.13007.1 ID=prot_H-paniculata_contig55276.13007.1|Name=mRNA_H-paniculata_contig55276.13007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
LATSLGAEHRFFVANSAWSNGTVECMNREVVNTFKAVLNEANLPVSEWPV
AVPVVQWALNTAHQARL
back to top

mRNA from alignment at H-paniculata_contig55276:897..1097-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55276.13007.1 ID=mRNA_H-paniculata_contig55276.13007.1|Name=mRNA_H-paniculata_contig55276.13007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig55276:897..1097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGACCTCGCTGGGAGCGGAGCATCGCTTTTTCGTGGCCAACTCAGC
GTGGTCAAACGGCACCGTGGAGTGCATGAATCGGGAGGTTGTCAACACCT
TCAAGGCGGTGCTGAACGAGGCGAACCTCCCGGTGAGCGAATGGCCGGTA
GCTGTGCCGGTGGTCCAGTGGGCCCTCAACACTGCGCACCAGGCCAGGTT
G
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig55276:897..1097-

>mRNA_H-paniculata_contig55276.13007.1 ID=mRNA_H-paniculata_contig55276.13007.1|Name=mRNA_H-paniculata_contig55276.13007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig55276:897..1097- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGACCTCGCTGGGAGCGGAGCATCGCTTTTTCGTGGCCAACTCAGC
GTGGTCAAACGGCACCGTGGAGTGCATGAATCGGGAGGTTGTCAACACCT
TCAAGGCGGTGCTGAACGAGGCGAACCTCCCGGTGAGCGAATGGCCGGTA
GCTGTGCCGGTGGTCCAGTGGGCCCTCAACACTGCGCACCAGGCCAGGTT
GTTGGCGACCTCGCTGGGAGCGGAGCATCGCTTTTTCGTGGCCAACTCAG
CGTGGTCAAACGGCACCGTGGAGTGCATGAATCGGGAGGTTGTCAACACC
TTCAAGGCGGTGCTGAACGAGGCGAACCTCCCGGTGAGCGAATGGCCGGT
AGCTGTGCCGGTGGTCCAGTGGGCCCTCAACACTGCGCACCAGGCCAGGT
TG
back to top