mRNA_H-paniculata_contig5526.13006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5526.13006.1
Unique NamemRNA_H-paniculata_contig5526.13006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5526.13006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5526contigH-paniculata_contig5526:11647..13726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size879
Cds size876
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.7203066-CDS-H-paniculata_contig5526:11648..120081622930578.7203066-CDS-H-paniculata_contig5526:11648..12008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 11649..12008 -
1691481356.664697-CDS-H-paniculata_contig5526:11648..120081691481356.664697-CDS-H-paniculata_contig5526:11648..12008Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 11649..12008 -
1622930578.7364411-CDS-H-paniculata_contig5526:13210..137261622930578.7364411-CDS-H-paniculata_contig5526:13210..13726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 13211..13726 -
1691481356.6755223-CDS-H-paniculata_contig5526:13210..137261691481356.6755223-CDS-H-paniculata_contig5526:13210..13726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 13211..13726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5526.13006.1prot_H-paniculata_contig5526.13006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5526 11649..13726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5526.13006.1

>prot_H-paniculata_contig5526.13006.1 ID=prot_H-paniculata_contig5526.13006.1|Name=mRNA_H-paniculata_contig5526.13006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
GTTNKSGGGTAGKHSNSSNSNSTITTGSGSGVANSPSNGGNTTNDHADIP
QHSEKRQQQQHDTSPSRRGNSDGGGAGGAGGSGSIISSTSKLGVYPSGTS
SSSGSPSPGGGGGTNSNNKNTNNSNKSDKVLPHHSSAGREDQSNNAGGSG
IHDQHNHLHQRGSSGGAGVSNQATPCGYTTPFPSSDPPSASADRGRPPPR
MIHQQAPPAPSAPGPAGPALGITASSKGPVSPSTPIRVHPHHHHHHHPQH
PATSYHHSSLHEQKHMTGSGPGNGGGGDDGGSGSRGRHLGVG
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mRNA from alignment at H-paniculata_contig5526:11647..13726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5526.13006.1 ID=mRNA_H-paniculata_contig5526.13006.1|Name=mRNA_H-paniculata_contig5526.13006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2080bp|location=Sequence derived from alignment at H-paniculata_contig5526:11647..13726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACCACCAACAAATCAGGCGGCGGAACTGCGGGCAAACACAGCAACAG
CAGTAATAGCAACTCCACCATCACCACCGGCAGCGGTAGCGGGGTAGCAA
ACTCGCCTTCCAACGGCGGCAACACCACCAATGACCATGCTGATATTCCG
CAACATAGTGAAAAACGGCAGCAGCAGCAACACGACACATCACCTTCACG
CCGAGGCAACAGCGACGGCGGCGGTGCGGGGGGTGCGGGGGGAAGCGGGT
CAATTATATCTTCAACTTCGAAACTTGGAGTCTATCCATCAGGCACCAGT
TCTAGCAGTGGTAGCCCGAGCCCCGGTGGCGGCGGTGGCACCAACAGCAA
CAATAAAAACACTAACAATAGCAATAAGTCGGACAAGGTCCTTCCGCATC
ATTCCTCCGCAGGTCGGGAAGACCAGAGTAATAATGCAGGCGGCAGTGGT
ATTCATGATCAGCACAACCATCTTCATCAGCGGGGTAGCAGCGGTGGGGC
GGGTGTCAGTAACCAGGTGAGATTTGTGAGTGCCTGTGGGGAAGGACGGG
GGGGAGAGGCGTACTATACATGGACGAGAGACATCCTCGAAAAGTTTCAT
GTGTAAGTCAATTATTCCGCAGTCAGTTGAACTAGCTCTTATGCTCACAT
TACAACTCCACTTTTCCCATGTTGACGTCATCCAGTTTTACACTTTAATC
AGCAAAATGAGATCACTCATGGATGTACTCATATTTTGCATGCCGTAGTT
AGTATTAGACCATTGGCCAGGTCATCGGAAGGACAGAGCTTTGTTCCTGT
CGGAGAGATTTTCCAATGGCCAATCGGTTTTTCCTACGTTGCCAAATATG
GCTGGAAGGGTTGGTGGGGGAGGGGGGGTCTTTAGTTCACCCGTAAAATA
TGGACGGACGCCTGTCCAAAGCTGACTCGTTTTTTGTTGTTTTTGGTCTG
GGTCATTTTTGCCTCCTTATTAGTCTAGATAAGCACTTCCTGGTTATTGC
GGTACGTGGTTGGTTTGCCATTTTTTTTGTTTTTTTTAAACCCCGGAAGG
CTAAGGTAAAAACCTGTATCCGATGCTTCCATACCGAAGTATTTCTACCT
TTCCTTTAACAGAACATAATTATTTATTCCTCTGCGGGGTAGGCACCACC
CCGGTTCGGCTGAACCAGAATGGCAGTGTGGGGGTTGCACCAATTACAAA
ACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGTTACCCTACCCG
TTCGGGCGTAGGTCCGTGGTGGTTTGCCAAGTTGTGATGTGTTAGAACCT
GGTGCAGACAAGTGCTGGTTGCTTTTGTCTTGATCGAATTCTGACAACCC
TTTCTCCTCCACCCGAGATCTGACCTCGGTCGGTTTGGAGAAATCGTTGT
TAGCACGCAGCACTAGTGTTGGAAGTAACGAAGCATACGTGAACCAAATC
GATTGTTGTTGGCATTTTTTTTTGCTGTAGCTCTACTTCATTGTGTTTCG
AATCGTTTTTATTCCCATGTCGTTGGCGATGCTATCCGTTTGTCTTGTCT
GTCCCGCTGTTGAAAGGAGCTGTCCTGCTCGTGCTCTGCTGCTCAAAGTC
CCCTAAGTTGACCTTCTCTTGCAAGCTGTTGGCATTTTGAGCTACACATC
AGATATCCTGTAGATTTGCTCTCGAGCCCTAACCTTTCCCGTTTACCGCT
GACCTCTCCTGTCACCAGGCCACACCCTGCGGCTACACGACCCCCTTCCC
CTCCTCCGACCCACCTTCAGCATCAGCAGACCGAGGCCGACCTCCACCGC
GCATGATCCATCAGCAAGCCCCCCCCGCTCCGTCGGCCCCAGGCCCCGCT
GGTCCCGCCCTCGGTATCACCGCCTCTTCGAAGGGGCCGGTCTCACCCTC
TACGCCAATTCGCGTGCACCCACATCATCACCATCATCATCATCCTCAGC
ATCCTGCCACGTCTTATCACCACTCCAGTCTTCACGAGCAGAAGCATATG
ACTGGATCCGGTCCTGGGAATGGCGGTGGCGGCGATGACGGTGGCAGCGG
CAGCAGGGGGAGGCATTTGGGCGTTGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5526:11647..13726-

>mRNA_H-paniculata_contig5526.13006.1 ID=mRNA_H-paniculata_contig5526.13006.1|Name=mRNA_H-paniculata_contig5526.13006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig5526:11647..13726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCACCACCAACAAATCAGGCGGCGGAACTGCGGGCAAACACAGCAACAG
CAGTAATAGCAACTCCACCATCACCACCGGCAGCGGTAGCGGGGTAGCAA
ACTCGCCTTCCAACGGCGGCAACACCACCAATGACCATGCTGATATTCCG
CAACATAGTGAAAAACGGCAGCAGCAGCAACACGACACATCACCTTCACG
CCGAGGCAACAGCGACGGCGGCGGTGCGGGGGGTGCGGGGGGAAGCGGGT
CAATTATATCTTCAACTTCGAAACTTGGAGTCTATCCATCAGGCACCAGT
TCTAGCAGTGGTAGCCCGAGCCCCGGTGGCGGCGGTGGCACCAACAGCAA
CAATAAAAACACTAACAATAGCAATAAGTCGGACAAGGTCCTTCCGCATC
ATTCCTCCGCAGGTCGGGAAGACCAGAGTAATAATGCAGGCGGCAGTGGT
ATTCATGATCAGCACAACCATCTTCATCAGCGGGGTAGCAGCGGTGGGGC
GGGTGTCAGTAACCAGGGCACCACCAACAAATCAGGCGGCGGAACTGCGG
GCAAACACAGCAACAGCAGTAATAGCAACTCCACCATCACCACCGGCAGC
GGTAGCGGGGTAGCAAACTCGCCTTCCAACGGCGGCAACACCACCAATGA
CCATGCTGATATTCCGCAACATAGTGAAAAACGGCAGCAGCAGCAACACG
ACACATCACCTTCACGCCGAGGCAACAGCGACGGCGGCGGTGCGGGGGGT
GCGGGGGGAAGCGGGTCAATTATATCTTCAACTTCGAAACTTGGAGTCTA
TCCATCAGGCACCAGTTCTAGCAGTGGTAGCCCGAGCCCCGGTGGCGGCG
GTGGCACCAACAGCAACAATAAAAACACTAACAATAGCAATAAGTCGGAC
AAGGTCCTTCCGCATCATTCCTCCGCAGGTCGGGAAGACCAGAGTAATAA
TGCAGGCGGCAGTGGTATTCATGATCAGCACAACCATCTTCATCAGCGGG
GTAGCAGCGGTGGGGCGGGTGTCAGTAACCAGGCCACACCCTGCGGCTAC
ACGACCCCCTTCCCCTCCTCCGACCCACCTTCAGCATCAGCAGACCGAGG
CCGACCTCCACCGCGCATGATCCATCAGCAAGCCCCCCCCGCTCCGTCGG
CCCCAGGCCCCGCTGGTCCCGCCCTCGGTATCACCGCCTCTTCGAAGGGG
CCGGTCTCACCCTCTACGCCAATTCGCGTGCACCCACATCATCACCATCA
TCATCATCCTCAGCATCCTGCCACGTCTTATCACCACTCCAGTCTTCACG
AGCAGAAGCATATGACTGGATCCGGTCCTGGGAATGGCGGTGGCGGCGAT
GACGGTGGCAGCGGCAGCAGGGGGAGGCATTTGGGCGTTGGGGCCACACC
CTGCGGCTACACGACCCCCTTCCCCTCCTCCGACCCACCTTCAGCATCAG
CAGACCGAGGCCGACCTCCACCGCGCATGATCCATCAGCAAGCCCCCCCC
GCTCCGTCGGCCCCAGGCCCCGCTGGTCCCGCCCTCGGTATCACCGCCTC
TTCGAAGGGGCCGGTCTCACCCTCTACGCCAATTCGCGTGCACCCACATC
ATCACCATCATCATCATCCTCAGCATCCTGCCACGTCTTATCACCACTCC
AGTCTTCACGAGCAGAAGCATATGACTGGATCCGGTCCTGGGAATGGCGG
TGGCGGCGATGACGGTGGCAGCGGCAGCAGGGGGAGGCATTTGGGCGTTG
GG
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