mRNA_H-paniculata_contig5526.13005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5526.13005.1
Unique NamemRNA_H-paniculata_contig5526.13005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5526.13005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5526contigH-paniculata_contig5526:9746..11564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5526.13005.1prot_H-paniculata_contig5526.13005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5526 9746..11552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.6200485-CDS-H-paniculata_contig5526:9745..98081622930578.6200485-CDS-H-paniculata_contig5526:9745..9808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 9746..9808 -
1691481356.6212292-CDS-H-paniculata_contig5526:9745..98081691481356.6212292-CDS-H-paniculata_contig5526:9745..9808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 9746..9808 -
1622930578.6326797-CDS-H-paniculata_contig5526:10895..111221622930578.6326797-CDS-H-paniculata_contig5526:10895..11122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 10896..11122 -
1691481356.6303778-CDS-H-paniculata_contig5526:10895..111221691481356.6303778-CDS-H-paniculata_contig5526:10895..11122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 10896..11122 -
1622930578.6487846-CDS-H-paniculata_contig5526:11509..115521622930578.6487846-CDS-H-paniculata_contig5526:11509..11552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 11510..11552 -
1691481356.6420615-CDS-H-paniculata_contig5526:11509..115521691481356.6420615-CDS-H-paniculata_contig5526:11509..11552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5526 11510..11552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.663707-UTR-H-paniculata_contig5526:11552..115641622930578.663707-UTR-H-paniculata_contig5526:11552..11564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5526 11553..11564 -
1691481356.654373-UTR-H-paniculata_contig5526:11552..115641691481356.654373-UTR-H-paniculata_contig5526:11552..11564Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5526 11553..11564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5526.13005.1

>prot_H-paniculata_contig5526.13005.1 ID=prot_H-paniculata_contig5526.13005.1|Name=mRNA_H-paniculata_contig5526.13005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MEGSVGIGGGGIAQEPAGPPSAPYRAMASAPTGGMGIPPPGSNPYASASP
VGGGGGSSGGGELWSSPGSSCAGRVPPHHVVSSPSQAWPQQHQHQQQRVA
PGAATNRSRHH
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mRNA from alignment at H-paniculata_contig5526:9746..11564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5526.13005.1 ID=mRNA_H-paniculata_contig5526.13005.1|Name=mRNA_H-paniculata_contig5526.13005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1819bp|location=Sequence derived from alignment at H-paniculata_contig5526:9746..11564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGCTGCGGGGATGGAAGGGTCTGTTGGTATCGGCGGTGGCGGCATTGC
GCAAGGTTTGTGGATGCGTGGTTGGTGATTGCCGATCGTGCTGTGATAGA
GGCTGCCCCCCTCCTCTGATGTGATTTAGGGTACCCTCTTGATTTATGAA
AAAGGTGCTCCTTATTTGATGAAAGGTACCCCTTAATTTGATCCGGAGTA
CCCCTTAATTTGATCCGGAGTACCCCTTTTTTTGATGCAGATATTCGATT
TTAGAGGGTACCCCCTTCGTTTGGTTGATATCACCCCCCTAACTTTGGTC
GGTTCGTGGATTCAGTCATCGCTGAATTGTATTTTAATTGTTGAGCGCAC
CTCCAGTTTCGATTGATGGCCATGTGTACGTATGTGTACGGTCACGTTTT
CCGGTTGGTCATTTTCCACTTGTGTTATTTTTTTCACAGCAGAACCAGCA
GGACCCCCCAGTGCCCCCTACAGGGCTATGGCGAGTGCCCCCACGGGGGG
TATGGGCATCCCTCCCCCGGGTTCGAATCCTTACGCTAGCGCGTCGCCGG
TGGGCGGCGGCGGTGGGAGCAGCGGTGGCGGGGAGCTGTGGTCGTCTCCG
GGCAGCAGTTGCGCCGGGAGGGTTCCACCCCATCACGTCGTGTCGTCGCC
GTCGCAGGCGTGGCCGCAGGTGTGTTTGTATATGTCTCTCTTTTCGAGTC
TTTTTATAGACTGTCCGGCGTTATACACATACGCCCACGCGCACACAACG
TACACACGCCCACTGTCGACTTTTTAGACGTGACCAGAATTGGGACCGGT
TCGCTATTGACACGTGAACAAACCGAAGTCGATTCGTGATATTGATGTCT
TTGGGGTGCCAGATAAGCGCGAATCAATCACTGTTGTACTTTCGGCGGGT
GAGGGGGGGAGGGGAGGGAGGGAGGGGGGGGGGGGGGGTGTACACCATTT
TGCTCATTTTTTACAATTGGTCGCGATCGGCTGGTTCAGTTCTGTGTTAT
TCGGCAAGAGAGGGTGTCCAGACTAATTATGTACTATACAAGTAGCTAGA
TTTTTTTCAGGCGGAATATATGAAATCTGGAAATATGGACACAGCTGAGA
AGAAAGATTGAAAAAAGAGCCGAATTTCCCATATTTGGAATTTTCCCCCC
TAGGAATCGATTTTTGTCGATTATTTGGTAGGTAGGCCCAAGACTTCCTT
TTGACTCTCGTAGTTTGTTTCTTCGCTCTTTACGATAGCTTCGTGGTCGG
CTGGTAATATCTGCGTCTTAAGGGTCTCGGATCGGCAGTCGAGTCTGTCT
GCTTCAGCAACGATTGATTGCATGAAAGATGTGAACGGAGCAGAATGAAA
GTGGTTCGGCACCGGGTATAACGGAACCGGCCCACGGTTGTTTTTTAACC
GGCTTAGACCACTCCGTATTGTGTTTTTTTTTGCTGGCATTTTTCTCTCT
TTCTCGAAGTGGGATTCGACTGAGTAGAATTCGCCGTCTTGTCGACCACG
AGGATCGGAGTTGGGTGAGAGAAATTGGTCGCATGTGCGTTGAGGGGATA
ACATTGTTTGTCAAGTTGTTGCCTAGTAGCTTGCAAATTGCGAGGTTGCT
GTTACTCGCCAATTTTGTCCAGTTGCGCCCTTTTCCCCGTAGAAATGATC
GCTTTCAATCATTATTACGTCAGTACCGCACTGATCAATAACTGGTGGAG
AGGTTATTTTCTTCCTGTTTTTGAAAATCGAATGCACACACCCACAACCG
CTGCAGCAGCACCAGCACCAGCAGCAGCGCGTTGCACCGGGGGCGGCGAC
CAATCGCTCTAGACACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5526:9746..11564-

>mRNA_H-paniculata_contig5526.13005.1 ID=mRNA_H-paniculata_contig5526.13005.1|Name=mRNA_H-paniculata_contig5526.13005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig5526:9746..11564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGGGTCTGTTGGTATCGGCGGTGGCGGCATTGCGCAAGATGGAAG
GGTCTGTTGGTATCGGCGGTGGCGGCATTGCGCAAGAACCAGCAGGACCC
CCCAGTGCCCCCTACAGGGCTATGGCGAGTGCCCCCACGGGGGGTATGGG
CATCCCTCCCCCGGGTTCGAATCCTTACGCTAGCGCGTCGCCGGTGGGCG
GCGGCGGTGGGAGCAGCGGTGGCGGGGAGCTGTGGTCGTCTCCGGGCAGC
AGTTGCGCCGGGAGGGTTCCACCCCATCACGTCGTGTCGTCGCCGTCGCA
GGCGTGGCCGCAGAACCAGCAGGACCCCCCAGTGCCCCCTACAGGGCTAT
GGCGAGTGCCCCCACGGGGGGTATGGGCATCCCTCCCCCGGGTTCGAATC
CTTACGCTAGCGCGTCGCCGGTGGGCGGCGGCGGTGGGAGCAGCGGTGGC
GGGGAGCTGTGGTCGTCTCCGGGCAGCAGTTGCGCCGGGAGGGTTCCACC
CCATCACGTCGTGTCGTCGCCGTCGCAGGCGTGGCCGCAGCAGCACCAGC
ACCAGCAGCAGCGCGTTGCACCGGGGGCGGCGACCAATCGCTCTAGACAC
CACCAGCACCAGCACCAGCAGCAGCGCGTTGCACCGGGGGCGGCGACCAA
TCGCTCTAGACACCAC
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