mRNA_H-paniculata_contig5522.13002.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5522.13002.1
Unique NamemRNA_H-paniculata_contig5522.13002.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5522.13002.1 vs. uniprot
Match: D8LTU0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.960e-7
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   13 SGMHIVPQFF---MGARRTSAEDFLSLLQDSEELQAREVPHLAAED 141
            S M +VPQ +   MG+RRTSAEDFLSLLQDSEELQAREVP +  E+
Sbjct:   16 STMQVVPQHYLSLMGSRRTSAEDFLSLLQDSEELQAREVPSMQDEE 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5522.13002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTU0_ECTSI1.960e-769.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5522contigH-paniculata_contig5522:5714..7645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size469
Cds size450
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5522.13002.1prot_H-paniculata_contig5522.13002.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5522 5714..7627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.161835-CDS-H-paniculata_contig5522:5713..60911622930578.161835-CDS-H-paniculata_contig5522:5713..6091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5522 5714..6091 -
1691481356.4003997-CDS-H-paniculata_contig5522:5713..60911691481356.4003997-CDS-H-paniculata_contig5522:5713..6091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5522 5714..6091 -
1622930578.1853304-CDS-H-paniculata_contig5522:7555..76271622930578.1853304-CDS-H-paniculata_contig5522:7555..7627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5522 7556..7627 -
1691481356.4130135-CDS-H-paniculata_contig5522:7555..76271691481356.4130135-CDS-H-paniculata_contig5522:7555..7627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5522 7556..7627 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.2039578-UTR-H-paniculata_contig5522:7627..76451622930578.2039578-UTR-H-paniculata_contig5522:7627..7645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5522 7628..7645 -
1691481356.4225674-UTR-H-paniculata_contig5522:7627..76451691481356.4225674-UTR-H-paniculata_contig5522:7627..7645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5522 7628..7645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5522.13002.1

>prot_H-paniculata_contig5522.13002.1 ID=prot_H-paniculata_contig5522.13002.1|Name=mRNA_H-paniculata_contig5522.13002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
MHIVPQFFMGARRTSAEDFLSLLQDSEELQAREVPHLAAEDTAAEDRQHR
TQSTLTECTDITSPVAAPTLSTHGSAESCGIGGASKAFSTSPTTGESGSH
NDVDDNSERKMDSAVGRTDAQHHPEDMYLIGQGGGDDDDDHEREAGGQAG
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mRNA from alignment at H-paniculata_contig5522:5714..7645-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5522.13002.1 ID=mRNA_H-paniculata_contig5522.13002.1|Name=mRNA_H-paniculata_contig5522.13002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig5522:5714..7645- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGACGGCGGGCAGCGGGATGCACATTGTGCCGCAGTTTTTTATGGGCGC
GCGGAGGACTTCTGCTGAGGACTTCTTATCGCTCCTGCAGGTGTGGTATG
CACGGGGGGGGAGGGGGTCTGTGCTTTGCACTTCGGGGTATTCCGACCTT
TGGCGCGGGGTGGGGGGTACACATGTGTTGCATGCTTTAGTGAGTTATTA
GACCATTGACCACGGGTTCTCGGGGAGGATGGATCGAGCTCTGTTCCTAT
CAGAGCGATTTCCGATCATGGGTCGTTGGTCTTTTTTACGATGTTGCTAA
ATGTGACTCCAGAATCTTTCTATCCATCCAATCCGCCTTAACCTTCGTCT
TTTCAGGACACTTTTTTTTTTTTTTTTTTTTAATCTTTGAAGACTGCTAT
CGCCTTTTTTTTCGCAGTAATCCCAGGATTCAACAAGGCCTTGCTCTCTG
TGGCTATGTCACAAAAGGTTTGCAAACATTTAGGAGGCTAGCTCACCCTT
CAAAGATTTTTTTGGTCGGATGCGACTTTTTGGACGTTTTGTTTTTTGTC
GTTGAATAGAGGCGATTGTACAGGTTGATTCATCTCCCCTCTGAAGGAAG
ACGTGGTTGACTCATCGATACAACGTAGCCTCCTTCGACTGGAAATAACC
GGTGGCTGATTGGTGCAGGTGACACTCGGGCTTCGTGAAGAAATTTCCAA
GCTCCGGAAAAGTATTTAGTTGAGTAGAGGATCATTTGTTTTTAGTGTAC
TCGGTCAACTATAGTTCTAACTATTTGAGTCAATCATTCTAGCTTTCTTC
TTGATTATCTGCTTGATACCAAGCGAGCGCAAGAGTGGGATATTTTTGCG
TTTATTCCTCGAAACCGCGGTCATTTTTTATCTTTCCGATGACGATTCTA
ATTTATTCAGGTCCGTTTTGTTTAGTAGAAATCCGTGGCATAACAAAGTT
GTGTTCCCAAGGGTGAAAGGACAAAGTAGTTAGGTTAAATATGTTTTTCA
TCAGTTCAGTGGTAGACTAGGGGTAAGGTCGTGCACTGCGTGCTTCATCC
TCGCGATACTGTGGTCGTGACTGGAGGATGTTCCTTAAGACGTATTTCTT
GGGAGTTAATGGAGTCCCGAGTTGTGGACAGTTTCAAAACGATTGTCACC
ACATTGTAGCGTGTTACGTAATCGTGGTTCAAGGATTTCTTCGTGTTGGT
CAGTGTATTTTTGTTTTTATTTACTGAAATACAACCCAAGAAGAGACTAC
ACGAAATTTTGTTCAGCAAAAAACAAAATCAGTAAGGAAACACAATCTGG
GTTGTATGTGCACATGAAGATGGTGATGAAGTGTTCACCTTCCAACCGTC
CTCTGAAACTGGTGTTGTCAAGACACCAGAGATATTTATTTCGAGTGTAT
TATTTAGAGGCTTTTCAAGCTCCACAAAGTACTCTACGTTTGAATCGAAG
GCCAGATACCTGTTTTCCCTGGAGCCAAACTCAGATGATGACATTTTTAA
GACCGCCCCCTCCGGTCCCCCCCGCTCCCCCCCCCGCCAAAAAAAAAAAA
AAAGGATTCGGAAGAGCTGCAAGCACGCGAAGTACCTCACCTGGCGGCAG
AAGACACGGCAGCGGAAGACCGACAGCATAGAACCCAGTCCACTCTCACC
GAGTGCACTGACATCACGTCGCCCGTTGCGGCGCCAACACTGAGCACCCA
CGGGAGTGCGGAGAGCTGCGGCATCGGCGGCGCTTCCAAGGCCTTCTCAA
CCTCGCCCACCACAGGCGAATCGGGATCACACAATGATGTCGATGATAAC
AGCGAGCGTAAAATGGATAGCGCCGTTGGGCGAACAGACGCACAGCATCA
TCCAGAAGATATGTACTTAATTGGGCAAGGGGGAGGTGACGATGATGATG
ACCACGAGCGAGAAGCAGGAGGGCAAGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5522:5714..7645-

>mRNA_H-paniculata_contig5522.13002.1 ID=mRNA_H-paniculata_contig5522.13002.1|Name=mRNA_H-paniculata_contig5522.13002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig5522:5714..7645- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACATTGTGCCGCAGTTTTTTATGGGCGCGCGGAGGACTTCTGCTGA
GGACTTCTTATCGCTCCTGCAGATGCACATTGTGCCGCAGTTTTTTATGG
GCGCGCGGAGGACTTCTGCTGAGGACTTCTTATCGCTCCTGCAGGATTCG
GAAGAGCTGCAAGCACGCGAAGTACCTCACCTGGCGGCAGAAGACACGGC
AGCGGAAGACCGACAGCATAGAACCCAGTCCACTCTCACCGAGTGCACTG
ACATCACGTCGCCCGTTGCGGCGCCAACACTGAGCACCCACGGGAGTGCG
GAGAGCTGCGGCATCGGCGGCGCTTCCAAGGCCTTCTCAACCTCGCCCAC
CACAGGCGAATCGGGATCACACAATGATGTCGATGATAACAGCGAGCGTA
AAATGGATAGCGCCGTTGGGCGAACAGACGCACAGCATCATCCAGAAGAT
ATGTACTTAATTGGGCAAGGGGGAGGTGACGATGATGATGACCACGAGCG
AGAAGCAGGAGGGCAAGCGGGGGATTCGGAAGAGCTGCAAGCACGCGAAG
TACCTCACCTGGCGGCAGAAGACACGGCAGCGGAAGACCGACAGCATAGA
ACCCAGTCCACTCTCACCGAGTGCACTGACATCACGTCGCCCGTTGCGGC
GCCAACACTGAGCACCCACGGGAGTGCGGAGAGCTGCGGCATCGGCGGCG
CTTCCAAGGCCTTCTCAACCTCGCCCACCACAGGCGAATCGGGATCACAC
AATGATGTCGATGATAACAGCGAGCGTAAAATGGATAGCGCCGTTGGGCG
AACAGACGCACAGCATCATCCAGAAGATATGTACTTAATTGGGCAAGGGG
GAGGTGACGATGATGATGACCACGAGCGAGAAGCAGGAGGGCAAGCGGGG
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