prot_H-paniculata_contig5520.12999.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5520.12999.1
Unique Nameprot_H-paniculata_contig5520.12999.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5520.12999.1 vs. uniprot
Match: R1EE81_EMIHU (Cytochrome b-c1 complex subunit 6 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EE81_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 3.270e-12
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 0 
Query:    1 ELREKCSKSSCAKAHEEYKACAVRVTDKGEGTCVGWYWDYLHCVDSCVSTVAF 53
            +L EK  ++SC KA E Y+ACA R+ +K  G C GWY DY+HCVDSCVS   F
Sbjct:   14 DLLEKGCEASCGKALETYQACAARIEEKA-GECSGWYGDYVHCVDSCVSKTLF 65
[Close]
BLAST of mRNA_H-paniculata_contig5520.12999.1 vs. uniprot
Match: A0A2P8Z8V5_BLAGE (Cytochrome b-c1 complex subunit 6 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Z8V5_BLAGE)

HSP 1 Score: 47.8 bits (112), Expect = 2.510e-5
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0 
Query:    2 LREKC-SKSSCAKAHEEYKACAVRVTDKGEGT--CVGWYWDYLHCVDSCVSTVAFG 54
            LRE+C  +  C   HE+Y AC  RV+ + + T  C    +DYLHCVD+CV+   F 
Sbjct:   32 LREQCHEQKKCTSLHEKYMACNDRVSSRSKTTEICNEELFDYLHCVDACVTKTLFS 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5520.12999.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
R1EE81_EMIHU3.270e-1256.60Cytochrome b-c1 complex subunit 6 n=1 Tax=Emiliani... [more]
A0A2P8Z8V5_BLAGE2.510e-542.86Cytochrome b-c1 complex subunit 6 n=1 Tax=Blattell... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilyGENE3D1.10.287.20coord: 1..56
e-value: 1.6E-13
score: 52.5
IPR036811Ubiquinol-cytochrome C reductase hinge domain superfamilySUPERFAMILY81531Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 2..54
IPR023184Ubiquinol-cytochrome C reductase hinge domainPFAMPF02320UCR_hingecoord: 1..52
e-value: 3.6E-14
score: 52.7
IPR003422Cytochrome b-c1 complex, subunit 6PANTHERPTHR15336UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEINcoord: 1..53
NoneNo IPR availablePANTHERPTHR15336:SF0CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIALcoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5520contigH-paniculata_contig5520:6345..6901 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5520.12999.1mRNA_H-paniculata_contig5520.12999.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5520 6345..8473 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5520.12999.1 ID=prot_H-paniculata_contig5520.12999.1|Name=mRNA_H-paniculata_contig5520.12999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
ELREKCSKSSCAKAHEEYKACAVRVTDKGEGTCVGWYWDYLHCVDSCVST
VAFGCIFQMKLLLKPIIKSRDLIL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036811Ubol_cytC_Rdtase_hinge_dom_sf
IPR023184Ubol_cytC_Rdtase_hinge_dom
IPR003422Cyt_b-c1_6