mRNA_H-paniculata_contig5520.12999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5520.12999.1
Unique NamemRNA_H-paniculata_contig5520.12999.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5520.12999.1 vs. uniprot
Match: R1EE81_EMIHU (Cytochrome b-c1 complex subunit 6 n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EE81_EMIHU)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-9
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 ELREKCSKSSCAKAHEEYKACAVRVTDKGEGTCVGWYWDYLHCVDSCVSTVAF 159
            +L EK  ++SC KA E Y+ACA R+ +K  G C GWY DY+HCVDSCVS   F
Sbjct:   14 DLLEKGCEASCGKALETYQACAARIEEKA-GECSGWYGDYVHCVDSCVSKTLF 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5520.12999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1EE81_EMIHU1.360e-956.60Cytochrome b-c1 complex subunit 6 n=1 Tax=Emiliani... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5520contigH-paniculata_contig5520:6345..8473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1797
Cds size225
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5520.12999.1prot_H-paniculata_contig5520.12999.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5520 6345..6901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.8740022-CDS-H-paniculata_contig5520:6344..64011622930577.8740022-CDS-H-paniculata_contig5520:6344..6401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5520 6345..6401 +
1691481356.2927797-CDS-H-paniculata_contig5520:6344..64011691481356.2927797-CDS-H-paniculata_contig5520:6344..6401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5520 6345..6401 +
1622930577.8909135-CDS-H-paniculata_contig5520:6733..69011622930577.8909135-CDS-H-paniculata_contig5520:6733..6901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5520 6734..6901 +
1691481356.3058505-CDS-H-paniculata_contig5520:6733..69011691481356.3058505-CDS-H-paniculata_contig5520:6733..6901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5520 6734..6901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.9078665-UTR-H-paniculata_contig5520:6901..84731622930577.9078665-UTR-H-paniculata_contig5520:6901..8473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5520 6902..8473 +
1691481356.3180754-UTR-H-paniculata_contig5520:6901..84731691481356.3180754-UTR-H-paniculata_contig5520:6901..8473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5520 6902..8473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5520.12999.1

>prot_H-paniculata_contig5520.12999.1 ID=prot_H-paniculata_contig5520.12999.1|Name=mRNA_H-paniculata_contig5520.12999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
ELREKCSKSSCAKAHEEYKACAVRVTDKGEGTCVGWYWDYLHCVDSCVST
VAFGCIFQMKLLLKPIIKSRDLIL*
back to top

mRNA from alignment at H-paniculata_contig5520:6345..8473+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5520.12999.1 ID=mRNA_H-paniculata_contig5520.12999.1|Name=mRNA_H-paniculata_contig5520.12999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2129bp|location=Sequence derived from alignment at H-paniculata_contig5520:6345..8473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCGCGAGAAGTGCTCCAAGTCGAGCTGTGCGAAAGCTCACGAAGA
GTATAAGGTACTCTTTTTTGTCTCCTGTTTTGTTGTCAAGGCTCTCTCAC
TCGAGAGCATAAGGCGTGCAGGCGAGAAAAAATTGCGCGTATTATCGTTA
CTCGTACGCGTACCCCAGGTTATGTCCTTCGGTACAATCTCTCGTATGTG
CACACAATTGTGACGGATGGACGTGTCCGTTCGTCACGTACAATACTGGT
GCCACTGTTGAACAACCTCCGCCTCGCTCACAGTGAAGTCCTCGTTCAGT
GGAGCCCCGTGGTACGACGGTGAATTTGATTGTCCAAACCAGGTCACCTA
CCCACTCTCATTCTCGCCCCCCTGTCAACCGTTTGGCAGGCGTGCGCAGT
GCGAGTCACCGACAAGGGCGAGGGAACCTGCGTGGGTTGGTATTGGGACT
ACCTACACTGTGTTGACAGCTGTGTAAGTACTGTAGCGTTTGGCTGTATT
TTTCAGATGAAGTTGCTGCTCAAACCCATAATAAAGTCGAGAGACTTGAT
CCTCTAGTGTGTCACGTGGGGATCTTGCGTAGTCCTGATCCTTCGTTGGG
ATTTCACCGATCCCCGAATATGGATGAGAGCAATCGCGACGAAATTGACT
AAAAATTATCCACGTGAAGGTTTGTACAGTGCGGGTATATGGCATGAAGT
TTTTCTCGCCTCCTCTTTGTTCAACCACTGTCAGCAGTAATCGAACGTTC
GTTATTCTTCCAAGGCATATAAAATACATGTGCTCATGTTACAGCTTCGG
GTGATTTTTTTGTTGGTTAGGATCGCTTGAAGTATGTGTGTTTGTCAGGG
GGGTGGAAGTTTCGACAGGGTCAGGGTTAGGCTGTTGAAATGTCATTGTG
TCTTGACGCTTTTTCTTGGCCCCGTTGCTGTTACTCCAAAACAAATCCAA
GTCTCCGTCAAATCGAAAATATTTACGTTATCGAACATTAGTCTCTATAT
ACACATCGTGTGTTGCATACCTACCCTTTCCTGTTCATATCCACACCACT
GATCTGTATCTCCTCGGCGTATTGTCCTGTCAGGCGGCTCCCACCTTATT
CAAGGTATTAAAGTGACGAGAGGCCAATGCGTAGGCCGAGTTAGGCGCGA
CAATAGACAAAGGGAAAGGAGGAGGCGGGGAGACGGAGTTTTGTTTTAAG
GGGTAGGAAAGCATGGGGGAGGCATTTGATATGGTTTTATTCTTTTGAAC
ATCACTAGTTTGCGGTCTTTTCCTGATGATGGAACGGCAAGGTAGCCTTG
AAGCACAAGAGGGTTAGGGGCGCAGGAAAGAGGGTTTGGCTGAGCCGAGT
CCAGAGCTGCTTCCGAGCCTGCTGTGTCGTATAGTCTTGAATCATTCCAC
GGTTTTTGGTCAAGCTTTTTCCCTGTTGGAGAAAGCGTGCGTTCTCATTG
AGCTCGGCCGTCAAGTTCGTTCCATGCTGCTGCTGCTGCTTCTGCTTCTA
CTATCCAAGTGTTGATTGTATGGATTCATTTGTTTTTTTCTTCAGTACGT
CAAGATATATCGTTAGGTGACAACTTTGCTTGGCACTACAATATGGAGGC
CTTTTCTTCTCCGGTTGGCGTGTGCATTTTTCACCCTTGAATGCGTTGCA
GCTGTTGAGTATTTGTTGGGTAATCAGTTGCTATGCGCCTTTCGGGCAAC
AGTATGTCCTGTTATATCGGCCACAGGTAGGAGCGGTACGCCAAGCGATT
AATTACAGGGCCGACCCTCGGGTCCATCCTTGCCTTTCCTTTGTTTGCTC
CGTACTGCTTGTGAACAATCCTGTATGGGTCATGTTTTACGCAAGATGCG
GATACAGTGGTATGGAAGCAAACGTTCATTCGTGATACGAATTCCTTGAT
TGGGGTACCTCATAGCCCCAGATACCAGTACACACACATAGTATATGTAC
ATACCGTGGTGATTACGTCAAAGACAGACTCCCTGAAGAGAAGTAATCGC
GTGAAGGACATGGTCAACTGGAGTACCAATCATAGGCATTGGTCTCTGGC
CGGATTCATCTCCAACTGAGAGAGAATATAAGGAATACAACATTTGTAAA
ATTAAAAGTGGACCCCCATTCATAGTGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5520:6345..8473+

>mRNA_H-paniculata_contig5520.12999.1 ID=mRNA_H-paniculata_contig5520.12999.1|Name=mRNA_H-paniculata_contig5520.12999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig5520:6345..8473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTCCGCGAGAAGTGCTCCAAGTCGAGCTGTGCGAAAGCTCACGAAGA
GTATAAGGAGCTCCGCGAGAAGTGCTCCAAGTCGAGCTGTGCGAAAGCTC
ACGAAGAGTATAAGGCGTGCGCAGTGCGAGTCACCGACAAGGGCGAGGGA
ACCTGCGTGGGTTGGTATTGGGACTACCTACACTGTGTTGACAGCTGTGT
AAGTACTGTAGCGTTTGGCTGTATTTTTCAGATGAAGTTGCTGCTCAAAC
CCATAATAAAGTCGAGAGACTTGATCCTCTAGGCGTGCGCAGTGCGAGTC
ACCGACAAGGGCGAGGGAACCTGCGTGGGTTGGTATTGGGACTACCTACA
CTGTGTTGACAGCTGTGTAAGTACTGTAGCGTTTGGCTGTATTTTTCAGA
TGAAGTTGCTGCTCAAACCCATAATAAAGTCGAGAGACTTGATCCTCTAG
back to top