mRNA_H-paniculata_contig552.12996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig552.12996.1
Unique NamemRNA_H-paniculata_contig552.12996.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig552.12996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig552contigH-paniculata_contig552:7613..7958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.549248-CDS-H-paniculata_contig552:7612..79121622930577.549248-CDS-H-paniculata_contig552:7612..7912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 7613..7912 +
1691481356.1576283-CDS-H-paniculata_contig552:7612..79121691481356.1576283-CDS-H-paniculata_contig552:7612..7912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 7613..7912 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.5661964-UTR-H-paniculata_contig552:7912..79581622930577.5661964-UTR-H-paniculata_contig552:7912..7958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig552 7913..7958 +
1691481356.1672046-UTR-H-paniculata_contig552:7912..79581691481356.1672046-UTR-H-paniculata_contig552:7912..7958Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig552 7913..7958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig552.12996.1prot_H-paniculata_contig552.12996.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig552 7613..7912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig552.12996.1

>prot_H-paniculata_contig552.12996.1 ID=prot_H-paniculata_contig552.12996.1|Name=mRNA_H-paniculata_contig552.12996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
PVPRTKKKNAQKQWRNHIITQYYKVIVVSKYLRSLCSRNSGPANPRTSIA
SHCKGREQHCSPHDQAPAVTAGYTGPSPTRLNPTGNRESTRPGQRKHHV*
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mRNA from alignment at H-paniculata_contig552:7613..7958+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig552.12996.1 ID=mRNA_H-paniculata_contig552.12996.1|Name=mRNA_H-paniculata_contig552.12996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=346bp|location=Sequence derived from alignment at H-paniculata_contig552:7613..7958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTTCCAAGAACAAAAAAAAAAAACGCACAAAAACAATGGCGAAACCA
TATTATTACTCAATATTATAAGGTGATTGTTGTCTCGAAATATCTTCGAA
GTCTCTGCTCACGCAACTCCGGACCGGCGAATCCTCGTACGAGCATAGCG
AGCCATTGCAAAGGCAGGGAGCAGCATTGTTCACCACACGATCAAGCCCC
CGCAGTGACCGCAGGGTATACCGGACCTAGTCCAACTCGCCTAAATCCGA
CCGGAAACAGAGAGTCAACACGTCCTGGACAACGAAAACACCACGTATAA
GGCAAATTTAGACTCGTTCAACGCCAGTCACATGGCGTGATTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig552:7613..7958+

>mRNA_H-paniculata_contig552.12996.1 ID=mRNA_H-paniculata_contig552.12996.1|Name=mRNA_H-paniculata_contig552.12996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig552:7613..7958+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTTCCAAGAACAAAAAAAAAAAACGCACAAAAACAATGGCGAAACCA
TATTATTACTCAATATTATAAGGTGATTGTTGTCTCGAAATATCTTCGAA
GTCTCTGCTCACGCAACTCCGGACCGGCGAATCCTCGTACGAGCATAGCG
AGCCATTGCAAAGGCAGGGAGCAGCATTGTTCACCACACGATCAAGCCCC
CGCAGTGACCGCAGGGTATACCGGACCTAGTCCAACTCGCCTAAATCCGA
CCGGAAACAGAGAGTCAACACGTCCTGGACAACGAAAACACCACGTATAA
CCCGTTCCAAGAACAAAAAAAAAAAACGCACAAAAACAATGGCGAAACCA
TATTATTACTCAATATTATAAGGTGATTGTTGTCTCGAAATATCTTCGAA
GTCTCTGCTCACGCAACTCCGGACCGGCGAATCCTCGTACGAGCATAGCG
AGCCATTGCAAAGGCAGGGAGCAGCATTGTTCACCACACGATCAAGCCCC
CGCAGTGACCGCAGGGTATACCGGACCTAGTCCAACTCGCCTAAATCCGA
CCGGAAACAGAGAGTCAACACGTCCTGGACAACGAAAACACCACGTATAA
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