mRNA_H-paniculata_contig552.12998.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig552.12998.1
Unique NamemRNA_H-paniculata_contig552.12998.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig552.12998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig552contigH-paniculata_contig552:26318..32272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog2880.D7G8X4
KEGG koko:K03255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular distribution of mitochondria
EggNOG OGsKOG1839@1,KOG1839@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000620.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons2
Model size734
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig552.12998.1prot_H-paniculata_contig552.12998.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig552 26582..32272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.4739566-UTR-H-paniculata_contig552:26317..265811622930577.4739566-UTR-H-paniculata_contig552:26317..26581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig552 26318..26581 +
1691481356.1300073-UTR-H-paniculata_contig552:26317..265811691481356.1300073-UTR-H-paniculata_contig552:26317..26581Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig552 26318..26581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.489331-CDS-H-paniculata_contig552:26581..266321622930577.489331-CDS-H-paniculata_contig552:26581..26632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 26582..26632 +
1691481356.1411426-CDS-H-paniculata_contig552:26581..266321691481356.1411426-CDS-H-paniculata_contig552:26581..26632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 26582..26632 +
1622930577.5050776-CDS-H-paniculata_contig552:31855..322721622930577.5050776-CDS-H-paniculata_contig552:31855..32272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 31856..32272 +
1691481356.1495616-CDS-H-paniculata_contig552:31855..322721691481356.1495616-CDS-H-paniculata_contig552:31855..32272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig552 31856..32272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig552.12998.1

>prot_H-paniculata_contig552.12998.1 ID=prot_H-paniculata_contig552.12998.1|Name=mRNA_H-paniculata_contig552.12998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
MGTATGDDKRPAGQPVEHKSDDGEVVTPTAQDGQIAPPTPPMEVQSSSAL
TTTMTTAADSTSSPAENPADATPITPAGEEDMAVYMTVYPPPESGAAPLV
LEPLPGGELAIQVKALLGELAQTCIYSAYRLVAVTPKAPDVSTKNGGGAG
GAPATA
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mRNA from alignment at H-paniculata_contig552:26318..32272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig552.12998.1 ID=mRNA_H-paniculata_contig552.12998.1|Name=mRNA_H-paniculata_contig552.12998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5955bp|location=Sequence derived from alignment at H-paniculata_contig552:26318..32272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACTTGCCATCGACAACGTTGTACCTCCTCTTGTCCCATCAAGCTGTCA
GGTCTATTTTACTTCTGTGAGGGGTGTCTTTGCTACGTTTACCAAGCAGG
CTCTGTATCACACACTGGCGTATTTTTGGTGAAGAGCACCAGACATCAAA
TTAAAAAGACGACGAGACTATAAGCAAGAGTTGTACGACAAACGGCCTGC
TCTCTCACCAAGTGAACCGTCGTGCTTTGGGGTATATTTTGCCACGGCAC
CAGCATAATTCATAATGGGTACTGCAACAGGGGACGACAAACGGCCTGCC
GGGCAGCCAGTAGAGGTAAGGATGAGTGGGTCTGTTGACCTTGCCAACAC
ATATTTGTCTTCTCTAGAGCAAAGTAACTTGTGACACAGACCAGGGTTGG
ATCGGATACTGCTGTCTTGTAACTGCTTGCTGCGGTTTCGCGCAAAGAAA
GCACCGCCAGTAGCTCTTGATCGACAGAGTGGAAGAGACTGACGAAAAGA
CACCGCATCCTGTGTTCGACGTCTGGTATGTACGGTCGGCATGGATTGTT
GCATAGCCAAATGCCCAACTAATTGTTGCCACCCCTACACAACAAACCAA
GCTTCCTACATGGTAGCGATCCCTCATGCATATTACCTGAAATGGGCGCG
CGCCTTATTGCCAACGAAATGTTCTGACTCGTATTGCTACTTGCTGGAGG
GTCAGCCAGCTATCCAACCAGGCCCCCGATGCCAACTTCTTGTGACAGTT
GTCCCAGCCGGTGCTATCGTGGCATGGCAGTACGCGCAGTCAACCCCTAC
TCTCTCGGGGGAAGGCTGAGGGATTGACGCGGAAGTTGATTTCTGCGGAA
GCTTGTTTTGGACCAGCGTTGCTCACTACCATCTGATCAAAGTTGGATAC
GATGGTCTGTCCTCTCCATCAACACTGGATAAGAAATCCAAACAAGAACT
GACTCGTTTCGTGGATTCGTGGATGGGGACGTTTTTTCACGTGTGATGTG
TAAATGTACGTACATTGACTGTGTCTACGATGTACAAGATACGGCAGAGG
TTGTGACATTCACCAGAGGTAGTGTTTCATGGTCTGCACGGCATCTACAC
GGGTCCGGATGCTGACGCGCTAGTTAGATATGTGTACACAAACATGGCCA
TGGCAGTAGTGAAAAAGAGCTGGTGCCTACGATGTGTTTTGCGGAAAACC
TCTTCCTCACTGCAACAACAAATCGACTGGTACTGAGTTTCTTCAAAACT
CCATTTTCTTGAACGTGTGACCCAAGACCCTGGATTATGGCTGAAGATAC
CTGTAGAGAGCGGTCGGTGTAAATGCATACCGAGGGCTGTTCAAAGAGGA
TGAATATTCATGGGTCTCCACGGGATTATCTGAGTGTTGGCGGACAAACA
TAATTGCTCGACTCCGAATCTCGATATGTTTGAATACAAAACACATTTTT
CGTTCGTTGAGGGAAATAGTTTTCAAATATAGGACCGTCCCCGCCCGTGA
AAAAATGAGAAACAAAGCCCCGAGATGTTTCTTTTTTTTTGCAATAAAGT
TGGTATTTGGTCCGGATCCAATATTTGACAGTTCCGTTTTGTGTTTGCAC
TCTGTGCGAGCAACATATTTTCACATGCCGTGTGTGTGTTTGTGTGAGTG
ACACAAGAGAGCATGTTGTATCAGATCGCCGACATATTGTTTCACGTTCA
TACAGTCCAGCCTACATAGCACTGGGGCATAAGCATCGAAGCCCTGAGAG
ACCATCTCATGATACATTCAGCAATACAGAGATTGTGACTCGTTCAACCA
CTACAACAGACTGATCTTGACCCCGCAGCTCCCAGTGCGACAGAACGGTT
GTAAATATGGCGATGACAGCGAACCAAACAGCCGGAACATTTTCGAGGGC
ATGAATCTTGCTAATTTGAGGTGTAAAATTATTATGCAGCGCGAGTCATA
CCGTCCTTTTTTAATTGTCACTCTTATTTATTGAGAAGTCAATGAAGAAA
ACTGAATTACTTCTTGAGAATATGTCATCGTTCAGCGACTACTCCTACAC
CAAATTTTATAATTTTGTCCAACGGCTCCAGACGATCAGGCAGAGGGTAA
AGTGTGATCTGTTTCCTCAGCAAGAGGCGACCCCTTTTGCTCACCATTAG
ACGCTCGCATCGATACATGACTTAAAAATCGGAGAAATCCGTTGAGTTTA
TAGAGGCATCTAACGTCTTCATTTTTTTTTTTTAATAATCCTATATGATT
TTGCAATTGACGCCAAAAATTTAACGGAAATTGGCGAAATTTATCGGGAG
CACGCGCACGGAAAAAAAAAGTCGGCCGAAAAAACACCATACTTTTTACC
CTTCGAGTATTTTCCCGATGGGAATACGAGAAATTGGTCGAAATTACCCC
AACCTTCAGCGTTCGTTACTCCTGATACAAATTGGGTCTACGAAGACACT
CAAATTGTTTCGAACATATCATATCTTCTCAACTACTGCGATTCATCTCA
AGCATTTTTGCCATCTGCCAATCAACGCGGATGTGCATAGGCACGTATCT
AGCCCATCAAAATTGGTTCCACAAGTTTGAGGTTGGATGCCCAAGCAGCG
TTTGATGATGTTGGTCTTGAAATCGAATTATTTTTGCGCCGCAATTAAAA
TCATGCGGCATGAGAGCTCGCAGATCAGGGACACCTCAAGCCCATGCGCT
GTGACGTAGCTACGAGCGTGCCAAAGATCATCGGACACTGTGACAAATTG
TAGGTCTACTACAAGTATATCTGAGCAAATTTCTTGAGCATAAATGTGCT
GTTGAAAAATCTTTCTCCACCGCGCAGTTTTTGACGTTTCGACGTGGAAT
TTTTGACACGTGATTTGCAATGTACTCGTGGATACTATAACCGTGATAAG
CAGACTTTTTTTTATTTTTTTTTAACAACCTACCACTGTTTCAAAATTCA
TTCCCTACAGAAAATCCGTAATATATCTGCCAGAAAAAAAAAAATAATGA
TAGAAAAAAAAATATATATATATATATACATACATTATCGCGGCTGGGGT
CTTCGCGAGTACGTTGCAAATCACGTGTCCAATTTCACGTCGAATCTTCA
AAAACTGCGCCGTGGAGGACGAGATGACTGTATGTTTTTTTTCTTGGGCG
GTCTAGCTTGTATATATTTTGAAATGCACTTCAGAGTAGCACATGTGTCT
TATGAGTATTGTATTTCAGCTTTTGAACGATTTCAACAGCAGCATCTGAA
CAATGTTGAATCTGGAGATATAGTATGCCATACACAGTGGACTTTACTTG
AGGCACAGAGGAGCTGCCAGTATATATCGGTGTTACCGCTGACTACAGAG
CCCTGCTGAGTATGAGTTGGACTGAGCAAGACGCGATTGAAACAAGTCGA
TGGGTGACAAGTAGCATGGGCTAATAAGGCGTTCTTCAGTATTATGGAAG
GTTCACCTTCATACATGCACAAGCACCCTGAGTGCAGAGTGCGCGGCGCG
CTCTGATTGGCCAACGGGGTACCTTGACAGTTCGCCCTTTATTACTCCCC
TTCATTTCGTCGATTCGCTGTTTCGAGGTTTTGATCTCAGTCGTTTTATA
CGACTCACCATCGACAACGTCTTCTTCACACAATTGGTTCGTGAATTTGT
TCGTGGATGGTGTATGCTAGTTTTTCTCTTTTCAATGCTGGTCATGTATA
TTTCTGGACGGATTCTGCCGGAGGTCTGTGGAGCTCTGGATGGTGTCTGT
ACTGCTGCATGTGCCCGCATGCTCGTGCAGCGATCATGGGTTGGGACAGG
AGCTATTTGTAGAAGGAAGCAATCAACGGTCGTATGGGTTTGGATTTCAC
TGTGAGAAACAAGTGGCATGAAAGTTGCATGGTTTCAGCCTCTGGACCAT
CTAATTAACAGTTGGAACGATTTTGGACGAGAATTTGAAGGTATTCGACC
TGAACGTTGGTTCACCATGAGCAAGCACGGTCGTTCTGATGTGTCCTCAA
CCGTTCACCTACGACTGTGGTGAATAACATTCAGACATAAAAATGAATGA
ATCAAGGGGGGTAAAGAGTATGTTTTACACGTGTCATTATCGCACACATG
CTGAAATTCAGAGGAACGTTTTTGTTTTTTGTTTTTTTTTCCCAATTTTT
CTTTTAGAGTTATTCGGAATATGTCGATGGGGTGCCGATTATTATTTACA
GTTGGCGGTTTTGATGTTTCGATCAACTGGCCCCTCGCGTCTTCCTACAC
ACTCCTCCACGAAAGTTGAGATGTTGGATGATGACGCGGAGTCTAATGTG
TGCGCAGCGAGAGATAAACTCACAGTCTTGGATGATATAATACGTATTCA
CGCCAACGGTTTGATCCGGCGAAAAACGCTAGGTTTGTCCATGATTTCGG
TGGGTAGAGTATTCGGTGTTGGTTGTTGTAGTTCTACAGTTAATAGGGTG
TGAGTAGTGACGTCAAAAAAAGGGCTGTTAAACACCGTCTGTAGTGCCCA
CCGAAAGGGTCTCCTCTTTAAGTAATAATCCTTCAAGAACCGGACTTTGT
GAAAGCGAAAGGATGAGATTTTCACCAAATATTCGTTCAAAATTATGAAT
AACAGGTATGGATCTCTGGTTGATGTGGCTCGGATACTGAAATGGGTTCG
TTTTTTTTGGTTGGTCGGCAGCTTCTATTTCGGGGTTTAGGGTGTGAAGG
TAAAATGATCAAAGAGCACTTTTTTTTTCTCCTGGCGACGAAATCATGAA
CAAGTTCTCGTGCATATCATCTGATGAAGCAGTGTCAGAAATTTCCTTGA
TGAATTAGAATCGACCAAGTTGTTCCGAAAGGAAGCGTACCTGCACGATG
AACAAATAAGTGATGTATACCTTTGTCACGTTTCTGAATTGAAATTCATC
TTTCTAGCGTATTATCCTCCAATCTTCATTTCCAAATTGTGAGCCCTCAT
GTTGTCATGCAGCCCTGCTGGCGGATCTTACATAGGCTACTTGGAACGCC
TGTTTTATTCGTTGGTCATTAGTGTATATACAAGTGAAATTTGAAGTCAG
CTCCACAATTTCAACATGAATACAGACGAGTTATTAGATGCTTTAATGCC
CCCCCACCCTCTCACCGTTCGCCCTATGTTTTTACCGCGCATTACGTGCA
CCCCTCGGACAAGAACGAATGGAGCGTTTGCAACTATATTGAACTACAAT
TTTTTCTCGGGTAAACACGTTTTTGGTCGTTTACAAGTTTTTGGTCAATC
TACAGACGGTGACCAGGTCGTCGTATATCCAGCGAACAGTCACACATGCA
GGTTCTGTTTATATTTTCCGGATGGTGTTCTATAGATTGAACACTCTCTG
TTCCCGAGCTTTATGATGCTTGCTCCATGGTGTATCGAGTACACTGCCTA
TTTTTCGCGTCACATCGACATCTTTCCCAACTCGAAACATACACATTATT
CATTCCAGATTTCTCGTGTTTATTCGTGTCTTGTATTCGTATTTGTCCGG
GGCGTGCATCCTTTACACCCTAAAAATGGACAAAACAGCACAAGTCCGAT
GACGGGGAAGTGGTTACGCCGACTGCTCAGGATGGACAGATCGCTCCGCC
CACACCACCAATGGAAGTGCAATCTTCTTCAGCCCTGACCACCACTATGA
CAACAGCAGCAGATTCGACTAGTAGCCCAGCCGAAAATCCCGCCGACGCC
ACCCCCATCACACCTGCCGGAGAGGAAGACATGGCCGTCTACATGACCGT
GTACCCTCCGCCGGAGTCCGGAGCGGCGCCGCTCGTGCTGGAGCCTCTCC
CGGGTGGAGAGCTGGCTATCCAGGTGAAGGCGCTACTCGGGGAGCTGGCG
CAGACGTGCATCTACTCTGCGTACCGACTGGTGGCGGTGACTCCCAAGGC
TCCGGATGTTTCGACGAAGAACGGAGGAGGGGCGGGGGGCGCGCCTGCCA
CCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig552:26318..32272+

>mRNA_H-paniculata_contig552.12998.1 ID=mRNA_H-paniculata_contig552.12998.1|Name=mRNA_H-paniculata_contig552.12998.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig552:26318..32272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTACTGCAACAGGGGACGACAAACGGCCTGCCGGGCAGCCAGTAGA
GATGGGTACTGCAACAGGGGACGACAAACGGCCTGCCGGGCAGCCAGTAG
AGCACAAGTCCGATGACGGGGAAGTGGTTACGCCGACTGCTCAGGATGGA
CAGATCGCTCCGCCCACACCACCAATGGAAGTGCAATCTTCTTCAGCCCT
GACCACCACTATGACAACAGCAGCAGATTCGACTAGTAGCCCAGCCGAAA
ATCCCGCCGACGCCACCCCCATCACACCTGCCGGAGAGGAAGACATGGCC
GTCTACATGACCGTGTACCCTCCGCCGGAGTCCGGAGCGGCGCCGCTCGT
GCTGGAGCCTCTCCCGGGTGGAGAGCTGGCTATCCAGGTGAAGGCGCTAC
TCGGGGAGCTGGCGCAGACGTGCATCTACTCTGCGTACCGACTGGTGGCG
GTGACTCCCAAGGCTCCGGATGTTTCGACGAAGAACGGAGGAGGGGCGGG
GGGCGCGCCTGCCACCGCGCACAAGTCCGATGACGGGGAAGTGGTTACGC
CGACTGCTCAGGATGGACAGATCGCTCCGCCCACACCACCAATGGAAGTG
CAATCTTCTTCAGCCCTGACCACCACTATGACAACAGCAGCAGATTCGAC
TAGTAGCCCAGCCGAAAATCCCGCCGACGCCACCCCCATCACACCTGCCG
GAGAGGAAGACATGGCCGTCTACATGACCGTGTACCCTCCGCCGGAGTCC
GGAGCGGCGCCGCTCGTGCTGGAGCCTCTCCCGGGTGGAGAGCTGGCTAT
CCAGGTGAAGGCGCTACTCGGGGAGCTGGCGCAGACGTGCATCTACTCTG
CGTACCGACTGGTGGCGGTGACTCCCAAGGCTCCGGATGTTTCGACGAAG
AACGGAGGAGGGGCGGGGGGCGCGCCTGCCACCGCG
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