mRNA_H-paniculata_contig5519.12993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5519.12993.1
Unique NamemRNA_H-paniculata_contig5519.12993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A6H5KC76_9PHAE (Beta-galactosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC76_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 6.430e-77
Identity = 164/268 (61.19%), Postives = 189/268 (70.52%), Query Frame = 2
Query:    2 MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXX------------FAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVDSNTSVSEGGGGXXXGGE-AAECWRGVR 766
            + V S VS+PEHW V+PRVGLR+LLPG FS +RWFGRGPHENYPDRK S  + R+AS V+EQ TPYIRPGECG K DVRWLEVSRP+ +     + + G  +AAAAT    S         EPA+LFAV + T     XXXXXXXXXXXXXXXXX            F+FSALPHLAEDLA  MHPE L  RPVTAVSLDHR+MG GGDDSWSACVHDE+L+RPG F F FA+AP+WRR      V++ GG    GGE A+E WR +R
Sbjct:  911 LTVESDVSMPEHWPVVPRVGLRILLPGDFSSIRWFGRGPHENYPDRKASTVVTRHASSVAEQLTPYIRPGECGGKADVRWLEVSRPAQNRAPAAAGIGGVSNAAAATAPASS-----YAFGEPAILFAVPAATATESGXXXXXXXXXXXXXXXXXXXXXXADSSPSLFSFSALPHLAEDLAGAMHPEQLPPRPVTAVSLDHRIMGVGGDDSWSACVHDEYLVRPGRFRFSFALAPFWRR---RRRVADNGGCENDGGEQASELWRALR 1170          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: D7FS01_ECTSI (Beta-galactosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS01_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.170e-36
Identity = 87/206 (42.23%), Postives = 97/206 (47.09%), Query Frame = 2
Query:   14 SGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLI 631
            S VS+PEHW V+PRVG+RVLLPGSFS +RWFGRG HENYPDRK S  + R+AS V+EQ TPYIRPGECG K DVRWLE                                                                                              L  RPVTAVSLDHR+MG GGDDSWSACVHDE+L+
Sbjct: 1219 SDVSMPEHWPVVPRVGIRVLLPGSFSSIRWFGRGLHENYPDRKASTVVTRHASSVAEQLTPYIRPGECGGKADVRWLE----------------------------------------------------------------------------------------------LPPRPVTAVSLDHRIMGVGGDDSWSACVHDEYLV 1330          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A3N5WU98_9CHLR (Beta-galactosidase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WU98_9CHLR)

HSP 1 Score: 133 bits (335), Expect = 1.850e-28
Identity = 81/233 (34.76%), Postives = 105/233 (45.06%), Query Frame = 2
Query:   11 GSGVSLPEHWAVI-------PRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVD 688
            GSG+   E+  V+       PR+GL ++LP  F    W+GRGPHENY DRK SA++GRY S V EQ TPY+   E G K D+RWL                         ++TD +G G          L  +                              ALP+  +DL    HP +LT RP T + LD   MG GGDD W+A VH EF+I PG +NF   + P   + D
Sbjct:  648 GSGMIALENRVVVDGRLPHLPRIGLELVLPAGFDTFSWYGRGPHENYVDRKRSASVGRYTSPVDEQFTPYVYTSESGGKEDIRWL-------------------------SLTDSTGAG----------LMVI----------------------GLDMLHVDALPYTIQDLEAAGHPYALTHRPETILHLDGWHMGVGGDDGWTAPVHPEFMIYPGKYNFSLCLRPLAPKED 823          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A7S2V9E2_9STRA (Beta-galactosidase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9E2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.100e-28
Identity = 68/193 (35.23%), Postives = 85/193 (44.04%), Query Frame = 2
Query:   92 DLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAP 670
            +L W GRGPHE YPDR  S A+GRY   V +Q  PYIRP E   K   RW  +                                 H  + +P +L A ++                        F FSALP+  EDL    HP  L  R    ++LDH+LMG GGDDSW+A VH E+LI P  F+F F + P
Sbjct:    2 NLEWLGRGPHETYPDRWTSGALGRYQGAVEDQLVPYIRPSENANKTHTRWACLL--------------------------------HENQDKPGLLVAASAP-----------------------FDFSALPYTTEDLEGAAHPFQLKKRDFVCLNLDHKLMGVGGDDSWTAAVHKEYLIHPEEFDFSFFLKP 139          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A1M5A0I4_9THEO (Beta-galactosidase n=1 Tax=Caldanaerobius fijiensis DSM 17918 TaxID=1121256 RepID=A0A1M5A0I4_9THEO)

HSP 1 Score: 130 bits (328), Expect = 1.760e-27
Identity = 70/225 (31.11%), Postives = 101/225 (44.89%), Query Frame = 2
Query:    2 MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYW 676
            + + + V   ++  ++PR+G+   LP  F  L+WFGRGPHENYPDRK+SA +G Y S V +Q  PYI P ECG K DVRWL                         ++TD +G G   E                                      F    +  ED A+  H   L  R    +++DH   G GGD+ WS C+H+++ ++PG + + FA+ P W
Sbjct:  873 IVIENAVDASKNLPILPRIGVTFTLPAKFDRLKWFGRGPHENYPDRKLSAHVGLYESTVDQQHFPYIVPVECGGKEDVRWL-------------------------SLTDQTGKGIIIE--------------------------------GFNLLHFDVHRNSVEDYAKAKHTIELKPRDEIYLNIDHIHSGLGGDNGWSKCIHEQYQVKPGRYQYSFAIKPLW 1040          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A7C3NCI2_9CHLR (Beta-galactosidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3NCI2_9CHLR)

HSP 1 Score: 130 bits (328), Expect = 1.780e-27
Identity = 81/214 (37.85%), Postives = 96/214 (44.86%), Query Frame = 2
Query:   47 IPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVD 688
            +PR+G+ + LPG F  L WFGRGPHENY DRK  AA+G Y S V+EQ TPY+ P ECG K DVRWL                         T+T+D G G             V S                          F AL +  +DLA   HP  L  R  T + LD   MG GGDD W A VH EFLI P  + F   + P  + VD
Sbjct:  881 LPRIGVELALPGGFERLTWFGRGPHENYVDRKCGAAVGLYHSTVTEQYTPYVFPSECGGKEDVRWL-------------------------TLTNDQGYG-----------LGVVSRDRLH---------------------FDALHYNIQDLANARHPYELPKREETFLHLDGWHMGVGGDDGWLASVHREFLIFPAVYQFAVRLFPLRQGVD 1037          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A3D1JDE4_9CHLR (Beta-galactosidase n=1 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=A0A3D1JDE4_9CHLR)

HSP 1 Score: 129 bits (323), Expect = 7.190e-27
Identity = 76/227 (33.48%), Postives = 97/227 (42.73%), Query Frame = 2
Query:   11 GSGVSLPEHWAVI-------PRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAP 670
            G G  L EH +VI       PRVGL + LP  F  + WFGRGPHENY DRK+ AA+G Y S V +  TPY+ P ECG + DVRW  +                                    + E   L  +                          F F AL +  +DL +  HP  LT  P T + +D   MG GGDD W + VH+EF I PG + + F + P
Sbjct:  863 GDGQVLVEHESVIDERLPYVPRVGLEMALPAGFERVLWFGRGPHENYVDRKLGAAVGLYQSSVDDMFTPYVFPSECGGREDVRWTALL-----------------------------------DEEECGLMVIGQDC----------------------FHFDALHYTVKDLEQARHPYELTRLPETLIHVDGWHMGVGGDDGWMSAVHEEFRIPPGRYRYAFRMRP 1032          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A2E4MGM1_9BACT (Beta-galactosidase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E4MGM1_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.550e-25
Identity = 74/234 (31.62%), Postives = 105/234 (44.87%), Query Frame = 2
Query:   26 LPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAV-------APYWRRVDSNTSVS 706
            +P+   V+P++GL + L   +S+LRW+GRGPHE+Y DRK SA IG Y+  V EQ  PYIRP E G K DV+W  +   S +G                                  +++ V                          F  SA  +  E+L E  H   +       V++DH++MG GGDDSW+   H E+LI PG +N+ F +       A   R +DS  S+S
Sbjct:  884 IPKGIPVVPKIGLTLKLDSKYSNLRWYGRGPHESYSDRKHSAFIGEYSGSVKEQYYPYIRPQENGNKTDVKWASIGNKSGAG---------------------------------LIIYGVP------------------------LFNLSAHQYSLENLTEATHTYMIKDNGPITVNIDHKVMGLGGDDSWNPRTHKEYLIGPGTYNYSFILRFSDNLMADTKRSIDSRMSLS 1060          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: UPI0013D17F60 (DUF4981 domain-containing protein n=1 Tax=Bacteroides sp. 51 TaxID=2302938 RepID=UPI0013D17F60)

HSP 1 Score: 122 bits (307), Expect = 6.100e-25
Identity = 75/217 (34.56%), Postives = 101/217 (46.54%), Query Frame = 2
Query:   23 SLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPY 673
            SLPE    IPR G+R++LP  +  + W GRGPHENY DRK SAAIGRY + V EQ  PY+RP E G K DVRWL                          +TD SG+G      +P    A                           F    + ++  D+ E+ H  S+  + +  V++DH  MG GGD++W A VH E+ I P   ++ F + PY
Sbjct:  878 SLPE----IPRFGMRMILPAEYEHMTWLGRGPHENYADRKSSAAIGRYEATVWEQYHPYVRPQETGNKCDVRWL-------------------------ALTDTSGEGILITGEKPLSASA-------------------------WNFPMEDIEYIPFDI-ERKHGGSIKKKDMVWVNIDHAQMGVGGDNTWGAQVHPEYTITPEAISYAFTLKPY 1039          
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A1Z9NIM4_9BACT (Beta-galactosidase n=1 Tax=bacterium TMED217 TaxID=1986780 RepID=A0A1Z9NIM4_9BACT)

HSP 1 Score: 122 bits (307), Expect = 6.280e-25
Identity = 71/219 (32.42%), Postives = 101/219 (46.12%), Query Frame = 2
Query:    8 VGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAV 664
            V +  S+PE   V P++GL + L   +S L+W+GRGPHE+Y DRK SA IG Y+  V +Q  PYIRP E G K DV+W                         AT  +D GDG         +++ +                          F  SA  +  E+L +  H   +       V++DH++MG GGDDSW+   H E+LI PG +N+ F +
Sbjct:  892 VEAETSIPEGLPVFPKIGLTLKLESKYSKLKWYGRGPHESYSDRKHSAFIGEYSGSVKDQYYPYIRPQENGNKTDVKW-------------------------ATFENDKGDG--------LIIYGIP------------------------LFNLSAHQYSLENLTKATHTHMIKDNGPVTVNMDHKVMGLGGDDSWNPRTHKEYLIGPGIYNYAFIL 1053          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC76_9PHAE6.430e-7761.19Beta-galactosidase n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7FS01_ECTSI2.170e-3642.23Beta-galactosidase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A3N5WU98_9CHLR1.850e-2834.76Beta-galactosidase (Fragment) n=1 Tax=Chloroflexi ... [more]
A0A7S2V9E2_9STRA9.100e-2835.23Beta-galactosidase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A1M5A0I4_9THEO1.760e-2731.11Beta-galactosidase n=1 Tax=Caldanaerobius fijiensi... [more]
A0A7C3NCI2_9CHLR1.780e-2737.85Beta-galactosidase n=1 Tax=Chloroflexi bacterium T... [more]
A0A3D1JDE4_9CHLR7.190e-2733.48Beta-galactosidase n=1 Tax=Anaerolinea thermolimos... [more]
A0A2E4MGM1_9BACT1.550e-2531.62Beta-galactosidase n=1 Tax=Candidatus Marinimicrob... [more]
UPI0013D17F606.100e-2534.56DUF4981 domain-containing protein n=1 Tax=Bacteroi... [more]
A0A1Z9NIM4_9BACT6.280e-2532.42Beta-galactosidase n=1 Tax=bacterium TMED217 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5519contigH-paniculata_contig5519:3..3742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue2.2e-36
Seed eggNOG ortholog2880.D7FS01
KEGG rclassRC00049,RC00452
KEGG koko:K01190
KEGG ReactionR01105,R01678,R03355,R04783,R06114
KEGG Pathwayko00052,ko00511,ko00600,ko01100,map00052,map00511,map00600,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.beta-glucuronidase activity
EggNOG OGsCOG3250@1,KOG2024@2759
EC3.2.1.23
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size2337
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5519.12993.1prot_H-paniculata_contig5519.12993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5519 4..2189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.2891784-UTR-H-paniculata_contig5519:2..31622930577.2891784-UTR-H-paniculata_contig5519:2..3Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5519 3..3 +
1691481356.0449445-UTR-H-paniculata_contig5519:2..31691481356.0449445-UTR-H-paniculata_contig5519:2..3Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5519 3..3 +
1622930577.3569782-UTR-H-paniculata_contig5519:2189..37421622930577.3569782-UTR-H-paniculata_contig5519:2189..3742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5519 2190..3742 +
1691481356.107102-UTR-H-paniculata_contig5519:2189..37421691481356.107102-UTR-H-paniculata_contig5519:2189..3742Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5519 2190..3742 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.3050866-CDS-H-paniculata_contig5519:3..561622930577.3050866-CDS-H-paniculata_contig5519:3..56Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 4..56 +
1691481356.0632675-CDS-H-paniculata_contig5519:3..561691481356.0632675-CDS-H-paniculata_contig5519:3..56Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 4..56 +
1622930577.3184342-CDS-H-paniculata_contig5519:987..12971622930577.3184342-CDS-H-paniculata_contig5519:987..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 988..1297 +
1691481356.0796804-CDS-H-paniculata_contig5519:987..12971691481356.0796804-CDS-H-paniculata_contig5519:987..1297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 988..1297 +
1622930577.3356495-CDS-H-paniculata_contig5519:1769..21891622930577.3356495-CDS-H-paniculata_contig5519:1769..2189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 1770..2189 +
1691481356.0951705-CDS-H-paniculata_contig5519:1769..21891691481356.0951705-CDS-H-paniculata_contig5519:1769..2189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5519 1770..2189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5519.12993.1

>prot_H-paniculata_contig5519.12993.1 ID=prot_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSA
AIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGT
VSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTGTEKQQEGNSTSTSKEK
NKTSTFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSW
SACVHDEFLIRPGNFNFGFAVAPYWRRVDSNTSVSEGGGGGEGGGEAAEC
WRGVRCILDR*
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mRNA from alignment at H-paniculata_contig5519:3..3742+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5519.12993.1 ID=mRNA_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3740bp|location=Sequence derived from alignment at H-paniculata_contig5519:3..3742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGGCGGTGGGGTCTGGTGTTTCCCTGCCGGAACACTGGGCTGTTATTC CCCGGTGGGTGTGTGGGTGTGTTGGGGTGTTTTTGAACACGGGGGTGCCC CCCCCCCCCCCCCCTGCTTTTTCATGTTGCGTCGTTGGATAAACACTCTC AGTTGGTCGTCACGTGAAGTTATCTGAATGTTCACATGGTGATGGCAGCA GTATACTGCACTTTCTGCGCGCGCAGACCCTCGAATAATGATTGATTTTT GATGATTTCAAGCTTGTCAAACAGGGGACTGCAGTGTCGGTGTCGTTGTC ACCCATCCTCCAACGCATGCATTGTGTTATGTTCACGTGTGGGCCGTGGG GCGTTAGGCGTTATCGGGGGAGAAGATGAGGTGGTGGTATCGCAGATAGA ATGCAATAGGCCTTCCCACACAGGCGCTGGCTTTCTCTAGGCAGTGATGC TAATAGGAGACATCGTCGGCCGTCTCTTCCTCCCCAGAAAAAGAGCAGTC GTACGAGATGCAGGCAGCACACCGTGCCACCGCTTTTCACGCTTTTAATT TAGTATTTCATTTAAAGGGCGCGTGGTTCATGGATGAAAAGTCACGAGAA ACACGCAGTGCCACCCTACGGTATGCCCTTCGTTGCCTCGCAAATAAACG CAGAGATTTTGCCGAGCATTGAGCTCTCACCTGTCCCTTCCATTTGATGT AATTTCGTTGATGAATGTGCACAGCTGAGATTGAGGTCACCTGACCCCCC CCCCCCACATATAACAGTTATATCTAGGCGTCAGATGATGGACTAAATAC CCATCACGAGACTCCGCCCACTTCTACATTCACCTCCCATCCGGTCTCTG AGCGCTGTTTTGGTTGCACTCCTTGAAGAGCTGTATGCGACGAATGAGAG GGGATGCAACAATAAATGAGGGCTTCCCACGTCGCACTTACATGTACAAT ACCTATCTATCTATCTCTTTTATCTATCTCTACAGGGTCGGCCTTCGCGT CCTCCTTCCGGGGTCCTTCTCCGACCTGCGGTGGTTCGGCCGTGGACCGC ACGAGAACTATCCAGACAGAAAGGTATCGGCCGCCATCGGGCGGTACGCG TCGCAAGTCTCGGAACAAGCCACCCCGTACATCCGACCCGGCGAGTGCGG TGCCAAGGTGGACGTGCGTTGGCTGGAGGTCAGTCGGCCGTCTGCTTCAG GTCGACAGGGGCAATCCCCCGTGACTGGGACAGTGTCGGCGGCAGCAGCG ACGGTGACGGATGATAGTGGCGACGGACAACATGCGGAAGAAGCGGTGAG CGATCTTCTTTGCCATCTTGCTTCTCGTCTGCGTATTTTGTCTGTCTGGC CGTCTAGCTCTCTGGTTGTCTTTCTCTCTCTCTATATATATATGTAAACC ATATTTTTTCTGTCTTGTCTGCATCTCTCCGTCTTTCGCTCTCTTTATCT CTCTCCTTCCGTCCTTCTCTCCCTCCCCCTCTCTCCTCTATCTTATGTAT GCGTATCCATCCCATATCCGAACTGTAGTGATGTATACCTCGTGACTCAC CGCACCGTGGATGAAGGGTATGACTAAGATTATGTTCTCTACAGACATTG CTTCTACTTTTATGAGTTGTGCGATACAACTGTTGTCGAGTGGCTCCATT TACTTCTACAGCGTAACGACTTGTCTCAACATAAGGAGTGCTTCCATTAA TTATCCTGCCGTTGGGCTGCCACGCTCGCCATTGTCCACGGCACATGCAT TCCTCTATTTTCAGCAGGAGCCCGCAGTGTTGTTTGCCGTGACTTCCACC ACCGGGACAGAGAAGCAGCAAGAAGGCAACAGCACCAGCACCAGCAAGGA GAAGAACAAGACGTCCACCTTCGCCTTCAGCGCACTGCCGCATCTCGCTG AAGATCTTGCCGAGCAAATGCACCCTGAGTCACTCACACTGCGCCCGGTA ACGGCCGTCAGCCTGGACCATCGGCTCATGGGCGCCGGAGGCGACGACTC TTGGAGCGCGTGCGTCCACGACGAGTTCCTGATACGACCCGGGAATTTCA ATTTCGGGTTTGCGGTAGCCCCGTACTGGCGGCGTGTCGATAGTAACACT AGCGTATCAGAAGGCGGTGGCGGGGGCGAGGGGGGGGGTGAGGCTGCTGA GTGTTGGCGCGGTGTGAGATGTATACTTGATAGGTGATGCTGTTGTGATC GAATTGTCGTGGACGCTGATTCGGATGGTCATTCCTCATTGTTGCAAGCG TGCTTTCAAGATTTTGCCACCATCGCGATGGTTGACCAAATGCAAGAGTC TCGACGAGGGGGTTCTGGGGTCTTCAGGCGGGGGCGCACATGCGCTCGAG CCAGGGGCGGGGAGGGGAGCGCCCAACCTTTTGCGTGTGTCACCAGTTGG CCAGTGATTTGCGCGTTAGTTTTTGACATGGACGGGGAGCCTGGCGGGGG GGTACATGTGTGCTATCCAGTGGTTGAGATTTTACCCGGTTTGGCCGATT GACCGTTGAAGAGTCACTATGGGGTGTGGGATTGTGGACGTGCTTGTGCA GACTTCCTTGCGGATTAGCTCAGTAGGTGCCCGTTGAAATCGATCGCTGT CACGCTTTTCCAGACAACCAAAAAGAGCAGAGCACACATACTCTCGCACG ATGTTGATCGTGTATTGCGCTATTGTGTTGCAGTACCGGAGGAATGGGGG TTATCCACTTGAGCCACATCGCGTTTACTCATGCATAAGTTACGACTTCA TCGGGTGGTCGGTTTCGGGTTGTGTCGGATTGTTCGGGGGTTTGGTCGTG AGCTTCGGGCAGGCAACGAACTGCGTCCCAATATGATGAAGATCGGATAC ATGAAGGAGTTGAGAGTTTCCTACGAAAACCTGCCGGATTTTGCCTCTTT GTCGGGATGTGTTTTTTTAGGAGGTACGACGCAGGATTTTGCCGGTTGCA AATTGCGTTTTTTACTTCGTGTGTGATTAGTTTATTCGTTTTTGTTTTTG TTTTTGTTTTTGTTTTCGCTCTTTCGTGCCTTTGCGGGATGTCTGACGAC GAGTAATGGTCCCGGGGCGAAGAGGATCACAGCTGTGATTTTTGTCAGAA TATGATTTTTTAGTGTGAAGGATCGGTCTCCTCGCTCGATGAGTCGAGTC CTGTTGGCTGTTGAGCGAGGATTGCGTTGATACATACTTCGGAGTATAGG TGTTGCGATGTACTACTAATTTGTTGGTACTTTGTTGTCGATGATCTGTC TTGACATCATTCTTGTGATGATGACTTCGCAGCGCGTCGCCGTCGCCGCA TCCTGCGACGGTAGTAATCGCGGGTTGGAGAAAGGGAGAAGGGCAACCGG GGACTTACACCCTTGTCGACAGTTTAGGCCAACCGACATTGTATCTCCTG GGTATCGGTTTTCAACGCCCTATAGATATGAAATGTGTACCATATTCGGT GTTTCATACTGACGGCCGGCTAGTAGCGGGTAGATGCGTATTTCTGAAGC GCTGTCGCGGCGTGTCGGATGATGCGCTGTGTGTATGCACCGAGGCCGAG AATTGCAGCAACTATCAATCAACGCAGTGTCTCGTGTCTGGTTCTGTCTC TTGCGCATGATAGACGGAGGAAGACAATGAACAGGATATAAAACATAGGC TGCTGCTGGACACGTGTGTGTATGTGTGTGTCTTTGGGCTGTATTAGCCG CTCCTACGGGATGTGCAAATAGCTGTTTGGAGATTGTGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5519:3..3742+

>mRNA_H-paniculata_contig5519.12993.1 ID=mRNA_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig5519:3..3742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGTGGGGTCTGGTGTTTCCCTGCCGGAACACTGGGCTGTTATTCC
CCGATGGCGGTGGGGTCTGGTGTTTCCCTGCCGGAACACTGGGCTGTTAT
TCCCCGGGTCGGCCTTCGCGTCCTCCTTCCGGGGTCCTTCTCCGACCTGC
GGTGGTTCGGCCGTGGACCGCACGAGAACTATCCAGACAGAAAGGTATCG
GCCGCCATCGGGCGGTACGCGTCGCAAGTCTCGGAACAAGCCACCCCGTA
CATCCGACCCGGCGAGTGCGGTGCCAAGGTGGACGTGCGTTGGCTGGAGG
TCAGTCGGCCGTCTGCTTCAGGTCGACAGGGGCAATCCCCCGTGACTGGG
ACAGTGTCGGCGGCAGCAGCGACGGTGACGGATGATAGTGGCGACGGACA
ACATGCGGAAGAAGCGGGTCGGCCTTCGCGTCCTCCTTCCGGGGTCCTTC
TCCGACCTGCGGTGGTTCGGCCGTGGACCGCACGAGAACTATCCAGACAG
AAAGGTATCGGCCGCCATCGGGCGGTACGCGTCGCAAGTCTCGGAACAAG
CCACCCCGTACATCCGACCCGGCGAGTGCGGTGCCAAGGTGGACGTGCGT
TGGCTGGAGGTCAGTCGGCCGTCTGCTTCAGGTCGACAGGGGCAATCCCC
CGTGACTGGGACAGTGTCGGCGGCAGCAGCGACGGTGACGGATGATAGTG
GCGACGGACAACATGCGGAAGAAGCGGAGCCCGCAGTGTTGTTTGCCGTG
ACTTCCACCACCGGGACAGAGAAGCAGCAAGAAGGCAACAGCACCAGCAC
CAGCAAGGAGAAGAACAAGACGTCCACCTTCGCCTTCAGCGCACTGCCGC
ATCTCGCTGAAGATCTTGCCGAGCAAATGCACCCTGAGTCACTCACACTG
CGCCCGGTAACGGCCGTCAGCCTGGACCATCGGCTCATGGGCGCCGGAGG
CGACGACTCTTGGAGCGCGTGCGTCCACGACGAGTTCCTGATACGACCCG
GGAATTTCAATTTCGGGTTTGCGGTAGCCCCGTACTGGCGGCGTGTCGAT
AGTAACACTAGCGTATCAGAAGGCGGTGGCGGGGGCGAGGGGGGGGGTGA
GGCTGCTGAGTGTTGGCGCGGTGTGAGATGTATACTTGATAGGTGAGAGC
CCGCAGTGTTGTTTGCCGTGACTTCCACCACCGGGACAGAGAAGCAGCAA
GAAGGCAACAGCACCAGCACCAGCAAGGAGAAGAACAAGACGTCCACCTT
CGCCTTCAGCGCACTGCCGCATCTCGCTGAAGATCTTGCCGAGCAAATGC
ACCCTGAGTCACTCACACTGCGCCCGGTAACGGCCGTCAGCCTGGACCAT
CGGCTCATGGGCGCCGGAGGCGACGACTCTTGGAGCGCGTGCGTCCACGA
CGAGTTCCTGATACGACCCGGGAATTTCAATTTCGGGTTTGCGGTAGCCC
CGTACTGGCGGCGTGTCGATAGTAACACTAGCGTATCAGAAGGCGGTGGC
GGGGGCGAGGGGGGGGGTGAGGCTGCTGAGTGTTGGCGCGGTGTGAGATG
TATACTTGATAGGTGA
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