mRNA_H-paniculata_contig5519.12993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A6H5KC76_9PHAE (Beta-galactosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC76_9PHAE) HSP 1 Score: 280 bits (716), Expect = 6.430e-77 Identity = 164/268 (61.19%), Postives = 189/268 (70.52%), Query Frame = 2
Query: 2 MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXX------------FAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVDSNTSVSEGGGGXXXGGE-AAECWRGVR 766
+ V S VS+PEHW V+PRVGLR+LLPG FS +RWFGRGPHENYPDRK S + R+AS V+EQ TPYIRPGECG K DVRWLEVSRP+ + + + G +AAAAT S EPA+LFAV + T XXXXXXXXXXXXXXXXX F+FSALPHLAEDLA MHPE L RPVTAVSLDHR+MG GGDDSWSACVHDE+L+RPG F F FA+AP+WRR V++ GG GGE A+E WR +R
Sbjct: 911 LTVESDVSMPEHWPVVPRVGLRILLPGDFSSIRWFGRGPHENYPDRKASTVVTRHASSVAEQLTPYIRPGECGGKADVRWLEVSRPAQNRAPAAAGIGGVSNAAAATAPASS-----YAFGEPAILFAVPAATATESGXXXXXXXXXXXXXXXXXXXXXXADSSPSLFSFSALPHLAEDLAGAMHPEQLPPRPVTAVSLDHRIMGVGGDDSWSACVHDEYLVRPGRFRFSFALAPFWRR---RRRVADNGGCENDGGEQASELWRALR 1170
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: D7FS01_ECTSI (Beta-galactosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS01_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.170e-36 Identity = 87/206 (42.23%), Postives = 97/206 (47.09%), Query Frame = 2
Query: 14 SGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLI 631
S VS+PEHW V+PRVG+RVLLPGSFS +RWFGRG HENYPDRK S + R+AS V+EQ TPYIRPGECG K DVRWLE L RPVTAVSLDHR+MG GGDDSWSACVHDE+L+
Sbjct: 1219 SDVSMPEHWPVVPRVGIRVLLPGSFSSIRWFGRGLHENYPDRKASTVVTRHASSVAEQLTPYIRPGECGGKADVRWLE----------------------------------------------------------------------------------------------LPPRPVTAVSLDHRIMGVGGDDSWSACVHDEYLV 1330
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A3N5WU98_9CHLR (Beta-galactosidase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3N5WU98_9CHLR) HSP 1 Score: 133 bits (335), Expect = 1.850e-28 Identity = 81/233 (34.76%), Postives = 105/233 (45.06%), Query Frame = 2
Query: 11 GSGVSLPEHWAVI-------PRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVD 688
GSG+ E+ V+ PR+GL ++LP F W+GRGPHENY DRK SA++GRY S V EQ TPY+ E G K D+RWL ++TD +G G L + ALP+ +DL HP +LT RP T + LD MG GGDD W+A VH EF+I PG +NF + P + D
Sbjct: 648 GSGMIALENRVVVDGRLPHLPRIGLELVLPAGFDTFSWYGRGPHENYVDRKRSASVGRYTSPVDEQFTPYVYTSESGGKEDIRWL-------------------------SLTDSTGAG----------LMVI----------------------GLDMLHVDALPYTIQDLEAAGHPYALTHRPETILHLDGWHMGVGGDDGWTAPVHPEFMIYPGKYNFSLCLRPLAPKED 823
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A7S2V9E2_9STRA (Beta-galactosidase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V9E2_9STRA) HSP 1 Score: 120 bits (300), Expect = 9.100e-28 Identity = 68/193 (35.23%), Postives = 85/193 (44.04%), Query Frame = 2
Query: 92 DLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAP 670
+L W GRGPHE YPDR S A+GRY V +Q PYIRP E K RW + H + +P +L A ++ F FSALP+ EDL HP L R ++LDH+LMG GGDDSW+A VH E+LI P F+F F + P
Sbjct: 2 NLEWLGRGPHETYPDRWTSGALGRYQGAVEDQLVPYIRPSENANKTHTRWACLL--------------------------------HENQDKPGLLVAASAP-----------------------FDFSALPYTTEDLEGAAHPFQLKKRDFVCLNLDHKLMGVGGDDSWTAAVHKEYLIHPEEFDFSFFLKP 139
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A1M5A0I4_9THEO (Beta-galactosidase n=1 Tax=Caldanaerobius fijiensis DSM 17918 TaxID=1121256 RepID=A0A1M5A0I4_9THEO) HSP 1 Score: 130 bits (328), Expect = 1.760e-27 Identity = 70/225 (31.11%), Postives = 101/225 (44.89%), Query Frame = 2
Query: 2 MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYW 676
+ + + V ++ ++PR+G+ LP F L+WFGRGPHENYPDRK+SA +G Y S V +Q PYI P ECG K DVRWL ++TD +G G E F + ED A+ H L R +++DH G GGD+ WS C+H+++ ++PG + + FA+ P W
Sbjct: 873 IVIENAVDASKNLPILPRIGVTFTLPAKFDRLKWFGRGPHENYPDRKLSAHVGLYESTVDQQHFPYIVPVECGGKEDVRWL-------------------------SLTDQTGKGIIIE--------------------------------GFNLLHFDVHRNSVEDYAKAKHTIELKPRDEIYLNIDHIHSGLGGDNGWSKCIHEQYQVKPGRYQYSFAIKPLW 1040
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A7C3NCI2_9CHLR (Beta-galactosidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3NCI2_9CHLR) HSP 1 Score: 130 bits (328), Expect = 1.780e-27 Identity = 81/214 (37.85%), Postives = 96/214 (44.86%), Query Frame = 2
Query: 47 IPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPYWRRVD 688
+PR+G+ + LPG F L WFGRGPHENY DRK AA+G Y S V+EQ TPY+ P ECG K DVRWL T+T+D G G V S F AL + +DLA HP L R T + LD MG GGDD W A VH EFLI P + F + P + VD
Sbjct: 881 LPRIGVELALPGGFERLTWFGRGPHENYVDRKCGAAVGLYHSTVTEQYTPYVFPSECGGKEDVRWL-------------------------TLTNDQGYG-----------LGVVSRDRLH---------------------FDALHYNIQDLANARHPYELPKREETFLHLDGWHMGVGGDDGWLASVHREFLIFPAVYQFAVRLFPLRQGVD 1037
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A3D1JDE4_9CHLR (Beta-galactosidase n=1 Tax=Anaerolinea thermolimosa TaxID=229919 RepID=A0A3D1JDE4_9CHLR) HSP 1 Score: 129 bits (323), Expect = 7.190e-27 Identity = 76/227 (33.48%), Postives = 97/227 (42.73%), Query Frame = 2
Query: 11 GSGVSLPEHWAVI-------PRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAP 670
G G L EH +VI PRVGL + LP F + WFGRGPHENY DRK+ AA+G Y S V + TPY+ P ECG + DVRW + + E L + F F AL + +DL + HP LT P T + +D MG GGDD W + VH+EF I PG + + F + P
Sbjct: 863 GDGQVLVEHESVIDERLPYVPRVGLEMALPAGFERVLWFGRGPHENYVDRKLGAAVGLYQSSVDDMFTPYVFPSECGGREDVRWTALL-----------------------------------DEEECGLMVIGQDC----------------------FHFDALHYTVKDLEQARHPYELTRLPETLIHVDGWHMGVGGDDGWMSAVHEEFRIPPGRYRYAFRMRP 1032
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A2E4MGM1_9BACT (Beta-galactosidase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E4MGM1_9BACT) HSP 1 Score: 124 bits (312), Expect = 1.550e-25 Identity = 74/234 (31.62%), Postives = 105/234 (44.87%), Query Frame = 2
Query: 26 LPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAV-------APYWRRVDSNTSVS 706
+P+ V+P++GL + L +S+LRW+GRGPHE+Y DRK SA IG Y+ V EQ PYIRP E G K DV+W + S +G +++ V F SA + E+L E H + V++DH++MG GGDDSW+ H E+LI PG +N+ F + A R +DS S+S
Sbjct: 884 IPKGIPVVPKIGLTLKLDSKYSNLRWYGRGPHESYSDRKHSAFIGEYSGSVKEQYYPYIRPQENGNKTDVKWASIGNKSGAG---------------------------------LIIYGVP------------------------LFNLSAHQYSLENLTEATHTYMIKDNGPITVNIDHKVMGLGGDDSWNPRTHKEYLIGPGTYNYSFILRFSDNLMADTKRSIDSRMSLS 1060
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: UPI0013D17F60 (DUF4981 domain-containing protein n=1 Tax=Bacteroides sp. 51 TaxID=2302938 RepID=UPI0013D17F60) HSP 1 Score: 122 bits (307), Expect = 6.100e-25 Identity = 75/217 (34.56%), Postives = 101/217 (46.54%), Query Frame = 2
Query: 23 SLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAVAPY 673
SLPE IPR G+R++LP + + W GRGPHENY DRK SAAIGRY + V EQ PY+RP E G K DVRWL +TD SG+G +P A F + ++ D+ E+ H S+ + + V++DH MG GGD++W A VH E+ I P ++ F + PY
Sbjct: 878 SLPE----IPRFGMRMILPAEYEHMTWLGRGPHENYADRKSSAAIGRYEATVWEQYHPYVRPQETGNKCDVRWL-------------------------ALTDTSGEGILITGEKPLSASA-------------------------WNFPMEDIEYIPFDI-ERKHGGSIKKKDMVWVNIDHAQMGVGGDNTWGAQVHPEYTITPEAISYAFTLKPY 1039
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Match: A0A1Z9NIM4_9BACT (Beta-galactosidase n=1 Tax=bacterium TMED217 TaxID=1986780 RepID=A0A1Z9NIM4_9BACT) HSP 1 Score: 122 bits (307), Expect = 6.280e-25 Identity = 71/219 (32.42%), Postives = 101/219 (46.12%), Query Frame = 2
Query: 8 VGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAAIGRYASQVSEQATPYIRPGECGAKVDVRWLEVSRPSASGRQGQSPVTGTVSAAAATVTDDSGDGQHAEEAEPAVLFAVTSTTXXXXXXXXXXXXXXXXXXXXXXFAFSALPHLAEDLAEQMHPESLTLRPVTAVSLDHRLMGAGGDDSWSACVHDEFLIRPGNFNFGFAV 664
V + S+PE V P++GL + L +S L+W+GRGPHE+Y DRK SA IG Y+ V +Q PYIRP E G K DV+W AT +D GDG +++ + F SA + E+L + H + V++DH++MG GGDDSW+ H E+LI PG +N+ F +
Sbjct: 892 VEAETSIPEGLPVFPKIGLTLKLESKYSKLKWYGRGPHESYSDRKHSAFIGEYSGSVKDQYYPYIRPQENGNKTDVKW-------------------------ATFENDKGDG--------LIIYGIP------------------------LFNLSAHQYSLENLTKATHTHMIKDNGPVTVNMDHKVMGLGGDDSWNPRTHKEYLIGPGIYNYAFIL 1053 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5519.12993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5519.12993.1 >prot_H-paniculata_contig5519.12993.1 ID=prot_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp MAVGSGVSLPEHWAVIPRVGLRVLLPGSFSDLRWFGRGPHENYPDRKVSAback to top mRNA from alignment at H-paniculata_contig5519:3..3742+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5519.12993.1 ID=mRNA_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3740bp|location=Sequence derived from alignment at H-paniculata_contig5519:3..3742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5519:3..3742+ >mRNA_H-paniculata_contig5519.12993.1 ID=mRNA_H-paniculata_contig5519.12993.1|Name=mRNA_H-paniculata_contig5519.12993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig5519:3..3742+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |