mRNA_H-paniculata_contig5518.12992.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5518.12992.1
Unique NamemRNA_H-paniculata_contig5518.12992.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5518.12992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5518contigH-paniculata_contig5518:7045..7868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size824
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5518.12992.1prot_H-paniculata_contig5518.12992.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5518 7407..7835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.1983733-UTR-H-paniculata_contig5518:7044..74061622930577.1983733-UTR-H-paniculata_contig5518:7044..7406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5518 7045..7406 +
1691481356.0101168-UTR-H-paniculata_contig5518:7044..74061691481356.0101168-UTR-H-paniculata_contig5518:7044..7406Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5518 7045..7406 +
1622930577.2393599-UTR-H-paniculata_contig5518:7835..78681622930577.2393599-UTR-H-paniculata_contig5518:7835..7868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5518 7836..7868 +
1691481356.0297892-UTR-H-paniculata_contig5518:7835..78681691481356.0297892-UTR-H-paniculata_contig5518:7835..7868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5518 7836..7868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.2172363-CDS-H-paniculata_contig5518:7406..78351622930577.2172363-CDS-H-paniculata_contig5518:7406..7835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5518 7407..7835 +
1691481356.0199454-CDS-H-paniculata_contig5518:7406..78351691481356.0199454-CDS-H-paniculata_contig5518:7406..7835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5518 7407..7835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5518.12992.1

>prot_H-paniculata_contig5518.12992.1 ID=prot_H-paniculata_contig5518.12992.1|Name=mRNA_H-paniculata_contig5518.12992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MCLKNGGATRQITPAWTLNCPRQVLVLSARRHDLFILCTVSSIFSLVRRQ
PERPAQAGFLFFTIECFRIVETGVNELLTVAYNIFKPFHKAWLLDISTMV
SYSNCNLSHTTFHYVAILELRFFDFSYTTFHCVVMLQLRSPK*
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mRNA from alignment at H-paniculata_contig5518:7045..7868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5518.12992.1 ID=mRNA_H-paniculata_contig5518.12992.1|Name=mRNA_H-paniculata_contig5518.12992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=824bp|location=Sequence derived from alignment at H-paniculata_contig5518:7045..7868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAAGCCGCGCTAAAGAAGCTAGTGAAATAGTCTCCCTAGGGTAACC
GTAGTTGTGGGGGTATCTTGACGGATGATGATTTACGTCCTGCTGCTTAC
CCTTTGCTATATCTGCCTGGAAATAGGGCCCTACGCGAAATTCCGACCAT
GCACACGAAGCCTTCGCGAAGTATAAGGGATCGGGGTCGCAAGATACGTA
ATTTTGTCATACTCGTGTATTTGTTCTGGACCCTCCCTCTCTTCTTGCCA
CGGTTTCGTTGCGGGACTGTCAGCTTTTTTCATAATTGTTTTTTCAGCGA
GGGGGTGAATTTCGCCCAGAGCTTCGGGTTGTGGGTTGAGCCCCATTACT
GCTACTGTTTGTATGTGCTTGAAAAATGGTGGAGCTACAAGGCAAATTAC
ACCTGCTTGGACACTGAACTGCCCACGGCAAGTTCTAGTTCTCTCGGCCA
GACGACATGATCTCTTCATATTGTGTACAGTATCCAGCATCTTCTCGCTT
GTGAGAAGACAGCCTGAGAGGCCCGCCCAAGCTGGGTTCTTATTTTTTAC
CATCGAGTGTTTTCGTATTGTCGAAACCGGAGTCAACGAGCTTCTCACAG
TTGCATATAATATTTTCAAGCCGTTTCACAAGGCCTGGTTGTTGGATATA
TCCACCATGGTGTCATACTCTAATTGCAATCTCTCACATACTACCTTCCA
CTATGTGGCGATACTCGAATTGCGATTTTTCGATTTTTCATATACTACCT
TCCACTGCGTTGTCATGCTCCAATTGCGATCTCCCAAATAGTGCCCTTCG
GTAATGTGAACCCTTGTATCGCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5518:7045..7868+

>mRNA_H-paniculata_contig5518.12992.1 ID=mRNA_H-paniculata_contig5518.12992.1|Name=mRNA_H-paniculata_contig5518.12992.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig5518:7045..7868+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTTGAAAAATGGTGGAGCTACAAGGCAAATTACACCTGCTTGGAC
ACTGAACTGCCCACGGCAAGTTCTAGTTCTCTCGGCCAGACGACATGATC
TCTTCATATTGTGTACAGTATCCAGCATCTTCTCGCTTGTGAGAAGACAG
CCTGAGAGGCCCGCCCAAGCTGGGTTCTTATTTTTTACCATCGAGTGTTT
TCGTATTGTCGAAACCGGAGTCAACGAGCTTCTCACAGTTGCATATAATA
TTTTCAAGCCGTTTCACAAGGCCTGGTTGTTGGATATATCCACCATGGTG
TCATACTCTAATTGCAATCTCTCACATACTACCTTCCACTATGTGGCGAT
ACTCGAATTGCGATTTTTCGATTTTTCATATACTACCTTCCACTGCGTTG
TCATGCTCCAATTGCGATCTCCCAAATAGATGTGCTTGAAAAATGGTGGA
GCTACAAGGCAAATTACACCTGCTTGGACACTGAACTGCCCACGGCAAGT
TCTAGTTCTCTCGGCCAGACGACATGATCTCTTCATATTGTGTACAGTAT
CCAGCATCTTCTCGCTTGTGAGAAGACAGCCTGAGAGGCCCGCCCAAGCT
GGGTTCTTATTTTTTACCATCGAGTGTTTTCGTATTGTCGAAACCGGAGT
CAACGAGCTTCTCACAGTTGCATATAATATTTTCAAGCCGTTTCACAAGG
CCTGGTTGTTGGATATATCCACCATGGTGTCATACTCTAATTGCAATCTC
TCACATACTACCTTCCACTATGTGGCGATACTCGAATTGCGATTTTTCGA
TTTTTCATATACTACCTTCCACTGCGTTGTCATGCTCCAATTGCGATCTC
CCAAATAG
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