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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_003500.1 |
| Exons | 1 |
| Model size | 1410 |
| Cds size | 1245 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5518.12991.1 >prot_H-paniculata_contig5518.12991.1 ID=prot_H-paniculata_contig5518.12991.1|Name=mRNA_H-paniculata_contig5518.12991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=415bp
MRDRGVDVEKDSCSRGHPSATVDVVDAVVWECDHNAEVRCLYPNNNSRCW
QSMPEYLNFGFKHFGGHDALADNTTKPPKVSLTLSDFLQSEESCDSCDFG
WFTPSANSLGSLDDLTPAGAEHGGTFTFSEPDSTAPLWPTAAHVFPGSTS
VNTAALSLSSTARNSRDICTSSPSKDATDNNRPTSSTCSSAKTSDSNDPQ
TCDKSLSAYISCQHNDVTTSSKSAGGSGGSVGISASVGGVRTFIRSRKNR
MPEINQWHTLHRAASSQGPLAAEAEGNGKLLLHLRRTAYPLSTRYFPENT
THKAETLVTQDTRESRRCSPNGTPPTALSSHHRSSAPGGSTGTNPYRNPT
AAVAAAPACGGALEETAVKHNRGSVRLSGNGSPAVAVPDNSSGRRARDFN
KAVAEAVAADRGARG back to topmRNA from alignment at H-paniculata_contig5518:2399..3808+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5518.12991.1 ID=mRNA_H-paniculata_contig5518.12991.1|Name=mRNA_H-paniculata_contig5518.12991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig5518:2399..3808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACCAAAAAGTAGACCCGCACAGAGGAGGTAAAACGAAAACAAGGTAGC
ACCCGCCTCCCCAGCGCATCCATTGAGTGACTAGTTACTTGATGCAGTGT
GCTGGGTGTGGCCCTGCTCAGCCCTACTCACGGGACCGGAAAGAAGAAAT
TCCAATAATAACGATATGAGAGACAGAGGGGTAGACGTCGAGAAGGACTC
GTGCTCCCGCGGGCATCCCTCAGCTACGGTAGATGTAGTCGACGCTGTCG
TCTGGGAGTGTGACCACAATGCTGAAGTGCGGTGCTTATACCCCAACAAT
AATAGTAGATGCTGGCAGTCAATGCCAGAATACCTAAACTTCGGGTTCAA
ACATTTCGGAGGCCACGATGCCCTAGCTGACAACACCACCAAGCCTCCCA
AGGTCAGCTTGACGCTTTCTGACTTCCTCCAGAGTGAAGAGTCTTGCGAC
TCCTGCGACTTCGGCTGGTTCACACCGTCTGCAAATTCTCTGGGCTCCCT
CGACGACCTGACTCCAGCTGGAGCCGAACATGGAGGGACCTTCACCTTCT
CAGAACCAGATTCCACCGCCCCCCTATGGCCCACGGCTGCCCATGTATTT
CCCGGGTCTACGTCAGTGAACACGGCCGCGCTGTCTCTGTCATCCACGGC
GAGAAACTCCAGAGACATCTGTACGTCCTCGCCGTCAAAAGACGCTACAG
ACAACAACAGACCCACGAGCAGCACCTGCAGCAGCGCGAAAACTTCGGAT
TCGAATGATCCACAAACGTGTGATAAGTCTCTCTCAGCCTACATCAGTTG
TCAACATAATGATGTGACAACATCAAGCAAAAGCGCTGGCGGTAGTGGTG
GCAGTGTGGGCATTAGCGCGAGCGTAGGCGGGGTGAGGACATTTATACGC
AGCAGGAAAAACCGCATGCCTGAGATAAATCAGTGGCACACCTTGCATCG
GGCGGCGTCTAGCCAAGGTCCACTGGCAGCAGAGGCCGAGGGCAACGGTA
AACTGCTATTGCATCTGCGGCGCACGGCGTATCCCCTTTCCACCCGCTAC
TTCCCTGAGAACACCACACATAAGGCAGAGACCTTGGTGACTCAAGACAC
GAGGGAAAGCCGTAGGTGCTCTCCGAACGGCACGCCACCGACAGCCTTGA
GCAGCCACCACCGCTCTTCGGCGCCAGGTGGCAGTACCGGCACTAACCCT
TACAGAAATCCGACAGCAGCGGTGGCGGCCGCGCCTGCTTGTGGGGGTGC
TTTGGAAGAAACAGCTGTCAAGCATAACCGCGGCAGCGTGCGCCTCAGCG
GCAATGGATCGCCTGCCGTCGCCGTGCCAGACAACAGTTCTGGACGCCGC
GCGAGAGACTTCAACAAAGCCGTGGCGGAGGCGGTCGCTGCCGACAGAGG
GGCGAGGGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig5518:2399..3808+ >mRNA_H-paniculata_contig5518.12991.1 ID=mRNA_H-paniculata_contig5518.12991.1|Name=mRNA_H-paniculata_contig5518.12991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2490bp|location=Sequence derived from alignment at H-paniculata_contig5518:2399..3808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGACAGAGGGGTAGACGTCGAGAAGGACTCGTGCTCCCGCGGGCA
TCCCTCAGCTACGGTAGATGTAGTCGACGCTGTCGTCTGGGAGTGTGACC
ACAATGCTGAAGTGCGGTGCTTATACCCCAACAATAATAGTAGATGCTGG
CAGTCAATGCCAGAATACCTAAACTTCGGGTTCAAACATTTCGGAGGCCA
CGATGCCCTAGCTGACAACACCACCAAGCCTCCCAAGGTCAGCTTGACGC
TTTCTGACTTCCTCCAGAGTGAAGAGTCTTGCGACTCCTGCGACTTCGGC
TGGTTCACACCGTCTGCAAATTCTCTGGGCTCCCTCGACGACCTGACTCC
AGCTGGAGCCGAACATGGAGGGACCTTCACCTTCTCAGAACCAGATTCCA
CCGCCCCCCTATGGCCCACGGCTGCCCATGTATTTCCCGGGTCTACGTCA
GTGAACACGGCCGCGCTGTCTCTGTCATCCACGGCGAGAAACTCCAGAGA
CATCTGTACGTCCTCGCCGTCAAAAGACGCTACAGACAACAACAGACCCA
CGAGCAGCACCTGCAGCAGCGCGAAAACTTCGGATTCGAATGATCCACAA
ACGTGTGATAAGTCTCTCTCAGCCTACATCAGTTGTCAACATAATGATGT
GACAACATCAAGCAAAAGCGCTGGCGGTAGTGGTGGCAGTGTGGGCATTA
GCGCGAGCGTAGGCGGGGTGAGGACATTTATACGCAGCAGGAAAAACCGC
ATGCCTGAGATAAATCAGTGGCACACCTTGCATCGGGCGGCGTCTAGCCA
AGGTCCACTGGCAGCAGAGGCCGAGGGCAACGGTAAACTGCTATTGCATC
TGCGGCGCACGGCGTATCCCCTTTCCACCCGCTACTTCCCTGAGAACACC
ACACATAAGGCAGAGACCTTGGTGACTCAAGACACGAGGGAAAGCCGTAG
GTGCTCTCCGAACGGCACGCCACCGACAGCCTTGAGCAGCCACCACCGCT
CTTCGGCGCCAGGTGGCAGTACCGGCACTAACCCTTACAGAAATCCGACA
GCAGCGGTGGCGGCCGCGCCTGCTTGTGGGGGTGCTTTGGAAGAAACAGC
TGTCAAGCATAACCGCGGCAGCGTGCGCCTCAGCGGCAATGGATCGCCTG
CCGTCGCCGTGCCAGACAACAGTTCTGGACGCCGCGCGAGAGACTTCAAC
AAAGCCGTGGCGGAGGCGGTCGCTGCCGACAGAGGGGCGAGGGGAATGAG
AGACAGAGGGGTAGACGTCGAGAAGGACTCGTGCTCCCGCGGGCATCCCT
CAGCTACGGTAGATGTAGTCGACGCTGTCGTCTGGGAGTGTGACCACAAT
GCTGAAGTGCGGTGCTTATACCCCAACAATAATAGTAGATGCTGGCAGTC
AATGCCAGAATACCTAAACTTCGGGTTCAAACATTTCGGAGGCCACGATG
CCCTAGCTGACAACACCACCAAGCCTCCCAAGGTCAGCTTGACGCTTTCT
GACTTCCTCCAGAGTGAAGAGTCTTGCGACTCCTGCGACTTCGGCTGGTT
CACACCGTCTGCAAATTCTCTGGGCTCCCTCGACGACCTGACTCCAGCTG
GAGCCGAACATGGAGGGACCTTCACCTTCTCAGAACCAGATTCCACCGCC
CCCCTATGGCCCACGGCTGCCCATGTATTTCCCGGGTCTACGTCAGTGAA
CACGGCCGCGCTGTCTCTGTCATCCACGGCGAGAAACTCCAGAGACATCT
GTACGTCCTCGCCGTCAAAAGACGCTACAGACAACAACAGACCCACGAGC
AGCACCTGCAGCAGCGCGAAAACTTCGGATTCGAATGATCCACAAACGTG
TGATAAGTCTCTCTCAGCCTACATCAGTTGTCAACATAATGATGTGACAA
CATCAAGCAAAAGCGCTGGCGGTAGTGGTGGCAGTGTGGGCATTAGCGCG
AGCGTAGGCGGGGTGAGGACATTTATACGCAGCAGGAAAAACCGCATGCC
TGAGATAAATCAGTGGCACACCTTGCATCGGGCGGCGTCTAGCCAAGGTC
CACTGGCAGCAGAGGCCGAGGGCAACGGTAAACTGCTATTGCATCTGCGG
CGCACGGCGTATCCCCTTTCCACCCGCTACTTCCCTGAGAACACCACACA
TAAGGCAGAGACCTTGGTGACTCAAGACACGAGGGAAAGCCGTAGGTGCT
CTCCGAACGGCACGCCACCGACAGCCTTGAGCAGCCACCACCGCTCTTCG
GCGCCAGGTGGCAGTACCGGCACTAACCCTTACAGAAATCCGACAGCAGC
GGTGGCGGCCGCGCCTGCTTGTGGGGGTGCTTTGGAAGAAACAGCTGTCA
AGCATAACCGCGGCAGCGTGCGCCTCAGCGGCAATGGATCGCCTGCCGTC
GCCGTGCCAGACAACAGTTCTGGACGCCGCGCGAGAGACTTCAACAAAGC
CGTGGCGGAGGCGGTCGCTGCCGACAGAGGGGCGAGGGGA back to top
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