mRNA_H-paniculata_contig55129.12989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55129.12989.1
Unique NamemRNA_H-paniculata_contig55129.12989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A8F0F898_9PHAE (Thiamine biosynthesis protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F898_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 4.680e-36
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            M FKSF+LIVS+NGQKYKIFI++P T+LS+IKFFNYEK+LNLIEHNGKIQSDL TN  YLK TS+IEIITIVGGG
Sbjct:    1 MNFKSFFLIVSVNGQKYKIFIIKPTTVLSIIKFFNYEKELNLIEHNGKIQSDLTTNSSYLKDTSKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A8F0JZ90_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZ90_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 7.140e-22
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK   F L+VS+NG +YKI++ QP  +L L++FFNY+K+L +IEHNGKI + LN  P YL+   +IEIITIVGGG
Sbjct:    1 MKITFFLLLVSLNGCEYKIYMTQPSQVLDLLEFFNYQKELIIIEHNGKIHNYLNKTPQYLRQKDKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A0R6LV33_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6LV33_UNDPI)

HSP 1 Score: 88.6 bits (218), Expect = 1.440e-21
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK K F L+VS+NG  YK+++ QP  +  +++FFNY+K+L +I+HNGKI +DLN N  Y+K   ++EIITIVGGG
Sbjct:    1 MKIKIFLLLVSLNGCDYKVYMTQPSQVSDILEFFNYQKELVIIQHNGKIHNDLNKNSQYVKQKDKVEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A0S0GBR2_COSCS (Uncharacterized protein n=4 Tax=Laminariales TaxID=2886 RepID=A0A0S0GBR2_COSCS)

HSP 1 Score: 86.3 bits (212), Expect = 1.180e-20
Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK   F L+VS+NG +YK+++ QP  +  LI+FFN++K L +IEHNGKIQ+ LN  P Y++   +IE+ITIVGGG
Sbjct:    1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLIEFFNHQKDLVIIEHNGKIQNYLNKTPQYVRQKDKIEVITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A8F0FAS9_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAS9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.380e-20
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK K F+L + +NG KYKIFI QP  I  L+ F +Y+K+L ++EHNGKI ++ N +P Y+K   +IEIITIVGGG
Sbjct:    1 MKIKLFFLSIYLNGYKYKIFIAQPTDIYHLLIFLSYQKELIIVEHNGKIYNNSNKDPKYIKQKDKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A516ICZ3_9PHAE (Uncharacterized protein n=2 Tax=Lessonia TaxID=105411 RepID=A0A516ICZ3_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.810e-20
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK   F L VS+NG +YK+++ QP  +  L++FFNY+K+L +I+HNGKI + LN N  YL+   +IEIITIVGGG
Sbjct:    1 MKINFFLLFVSLNGYEYKVYMTQPSQVFDLLEFFNYQKELVIIQHNGKIHNYLNKNFQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A8E8PDZ4_9PHAE (ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 4.810e-20
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK   F L+VS+NG +YK+++ QP  +  L++FFN++K+L +I+HNGKI +DLN    Y+K   +IE+ITIVGGG
Sbjct:    1 MKINFFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNDLNKTQKYVKQKDKIEVITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A5B9RD79_9PHAE (Ycf40 protein n=14 Tax=Laminariales TaxID=2886 RepID=A0A5B9RD79_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 9.700e-20
Identity = 39/75 (52.00%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK   F L+VS+NG +YK+++ QP  +  L++FFN++K+L +I+HNGKI + LN N  YL+   +IEIITIVGGG
Sbjct:    1 MKINLFLLLVSLNGCEYKVYMTQPSQVFDLLEFFNHQKELVIIQHNGKIHNYLNKNSQYLREKDKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A8F0JZ63_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ63_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.780e-19
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            MK K F+L V +NG KYKI++ +   ++ +++FFN+E+QL +IE NGKIQ+ LN  P Y K   +IEIITIVGGG
Sbjct:    1 MKIKIFFLSVFLNGSKYKIYMNKTSQLVDILEFFNHERQLIIIEQNGKIQNKLNNKPQYFKDKDKIEIITIVGGG 75          
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Match: A0A2R4QQ21_9PHAE (Thiamine biosynthesis protein n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ21_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 7.950e-19
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQSDLNTNPLYLKATSRIEIITIVGGG 225
            M+ K+F++++ +NG KYKIF  QP  I  L++F NY+K+L ++EHNGKI +       Y+K + +IEIITIVGGG
Sbjct:    1 MRKKTFFILIHLNGYKYKIFSTQPFQIYDLLQFLNYQKELIILEHNGKITNYFKVKSKYIKQSDKIEIITIVGGG 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55129.12989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A8F0F898_9PHAE4.680e-3681.33Thiamine biosynthesis protein n=1 Tax=Protohalopte... [more]
A0A8F0JZ90_9PHAE7.140e-2257.33Uncharacterized protein n=1 Tax=Egregia menziesii ... [more]
A0A0R6LV33_UNDPI1.440e-2153.33Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A0S0GBR2_COSCS1.180e-2053.33Uncharacterized protein n=4 Tax=Laminariales TaxID... [more]
A0A8F0FAS9_9PHAE2.380e-2054.67Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A516ICZ3_9PHAE4.810e-2053.33Uncharacterized protein n=2 Tax=Lessonia TaxID=105... [more]
A0A8E8PDZ4_9PHAE4.810e-2050.67ThiS n=4 Tax=Alariaceae TaxID=2887 RepID=A0A8E8PDZ... [more]
A0A5B9RD79_9PHAE9.700e-2052.00Ycf40 protein n=14 Tax=Laminariales TaxID=2886 Rep... [more]
A0A8F0JZ63_9PHAE2.780e-1953.33Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A2R4QQ21_9PHAE7.950e-1949.33Thiamine biosynthesis protein n=3 Tax=Fucaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55129contigH-paniculata_contig55129:645..872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930576.9483676-CDS-H-paniculata_contig55129:644..8721622930576.9483676-CDS-H-paniculata_contig55129:644..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55129 645..872 +
1691481355.9629831-CDS-H-paniculata_contig55129:644..8721691481355.9629831-CDS-H-paniculata_contig55129:644..872Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55129 645..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55129.12989.1prot_H-paniculata_contig55129.12989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55129 645..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55129.12989.1

>prot_H-paniculata_contig55129.12989.1 ID=prot_H-paniculata_contig55129.12989.1|Name=mRNA_H-paniculata_contig55129.12989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MKFKSFYLIVSINGQKYKIFILQPITILSLIKFFNYEKQLNLIEHNGKIQ
SDLNTNPLYLKATSRIEIITIVGGG*
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mRNA from alignment at H-paniculata_contig55129:645..872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55129.12989.1 ID=mRNA_H-paniculata_contig55129.12989.1|Name=mRNA_H-paniculata_contig55129.12989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig55129:645..872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTCAAATCTTTTTATTTAATTGTTTCGATTAACGGTCAAAAATA TAAAATTTTTATCCTTCAACCTATTACTATTTTATCTTTAATAAAATTTT TTAATTATGAAAAACAATTAAATTTAATAGAGCATAATGGTAAAATTCAA AGTGATTTAAATACAAATCCTCTTTATCTTAAAGCTACCTCTAGAATAGA AATTATAACAATTGTGGGAGGTGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig55129:645..872+

>mRNA_H-paniculata_contig55129.12989.1 ID=mRNA_H-paniculata_contig55129.12989.1|Name=mRNA_H-paniculata_contig55129.12989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig55129:645..872+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTCAAATCTTTTTATTTAATTGTTTCGATTAACGGTCAAAAATA
TAAAATTTTTATCCTTCAACCTATTACTATTTTATCTTTAATAAAATTTT
TTAATTATGAAAAACAATTAAATTTAATAGAGCATAATGGTAAAATTCAA
AGTGATTTAAATACAAATCCTCTTTATCTTAAAGCTACCTCTAGAATAGA
AATTATAACAATTGTGGGAGGTGGTTAAATGAAATTCAAATCTTTTTATT
TAATTGTTTCGATTAACGGTCAAAAATATAAAATTTTTATCCTTCAACCT
ATTACTATTTTATCTTTAATAAAATTTTTTAATTATGAAAAACAATTAAA
TTTAATAGAGCATAATGGTAAAATTCAAAGTGATTTAAATACAAATCCTC
TTTATCTTAAAGCTACCTCTAGAATAGAAATTATAACAATTGTGGGAGGT
GGTTAA
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