mRNA_H-paniculata_contig5510.12986.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5510.12986.1 vs. uniprot
Match: D7G5B5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5B5_ECTSI) HSP 1 Score: 632 bits (1629), Expect = 5.790e-193 Identity = 611/1578 (38.72%), Postives = 778/1578 (49.30%), Query Frame = 3
Query: 48 LLMLHTAFPKTEQEVECFALRGNFTTEARMVAT-KPPDVRATALMQALNAGLAKAVLRGRSRGVSFHWQDAFP---LGDDASDRTNSSFYPTRFVQPRTSLDRCLSAAGDFDVLRWNLEAESAMFLPPSVAHRGRFSRGLDKQRSGFSAEGS---RSTHEPTVAVALSGQGAIDVQLMAIRLGG---PLESTQQASG-----EVIVGSGSVCKSKITPWRLMGTLPLSEVWPGALAGQRWGATVLLRAMCDDGAMMWREMLGRFLAEGLVAAFTLPRRLFEISGSRNGDEVREDGRACVALTVALVMPISGECAVGWSLADEEVAAGVHEQFPGTAPAAETTMKFTARPSLPSTSEGVSPTISEV-------ERTLRMRQAEVGQALQESAVARRRRRHTKALPTERMRGMSSASATAAAAGVSARMAGLL-GRSGSLSPRESVSLCFTGEDMRGD-------------LDSENSYTSGSPRSVCVLETAMGMGDEDERASSTGSSYG-PRRALQQALEDASSRSSLLSRDADGFSTPGSKEGSR-SSGFSID-----RRPGPEVLLPPRSGGLRAGGLFPSAKDDEGGAADPAAPIRGGVSQLPLSFMAEPSLACLPAAPLPTEVVTLGERCALYNKVAAAALPXXXXXXXXXXX---RDPRQRARSNLPKRSTQGVRKDKARRLFIAAIRAVEQKEHEAARTKASPMKSASVPQRSGTLKTGERGEGFE------FSEDIITGTQRSGPARSDEVEETCV-PEERARAPFAASGLEDCVSNGVSGLRRQYLEIVEGGQRSPVEFVVRTVPEAIRDLAHKACIDDDGKSGGAPSDGGGDRHSRASALVMAAIVSGLTASPEELGAKHRANKKVKIAAAVAAGQSTVTTEVRDSVATPAIQKVRDFQLQALLMCQLNALAMDLPDIPEALAVFAALATSRAASADGEDHSSHRGAKDKKGXXXXXXXXXXXXXXXXXXGKDDDSAPIRPCDPLPEARRSRLESFLQPISTMLDACTVTKAVPAAGDGDDGGTKAQGG-GTANGFSIRAYDGTLADFMGLGLVEHFASRLPRTLGALFDDFERHPPEALTAALAAA----SCSAPSGGHAAVGIVEDGGRVEERAXXXXXXXXXXGVDAEVSXXXXXXXXXXXXXXSAASDLASAGVSSRVTPSAGILLSDRTSMSHNHFKMSGVLNGFREVKLKS-RATSGGLRPGVAEAPKAGVKPILRTGSVRGGRGTCVEQDGAWRKSSRVEAGG-GSRGRSARDSKPTGSLKALPPRAPTATARHLEVRYSPRLARKRPSGGSGIECGDADADTFKKSDSDPSSSLPPSTETATSQLCKRRKFPGKSPNPGKDGISGGGGDGDFGGMAIAPRTCSGVLVSETPRKRPADAMAAMRARRREGGDGRSAGGRGLHGKLGVATGSPAAAATRS-------EGSHWPKAEGAGYSPAAKPRALAASPAEDSRATRRQRVMNSPSSARDDPDAIARVREVMPSPPSWRAASASGRLFVEESPTGAGVPAAGADDRTGSKSAWALAESGGSGSGIVRQLMTETA-SPLPQRRRAVVPDTP 4577
LL+LH+AFP + + + F L GNFT+EA + + PD +A+AL LN L KA++R RS GVSF WQD P +G + R +S + R+ + RCLSAAG +L W LPPS A + + + R +G VAVAL+ +G +D+ L+A ++ G P + + + G + S S +TPWRLMGT+P+ EVWP +L GQ WG T +L+ GA +WR L +A L LPRRLF N + +G ALTVAL++P+SGECAV +S A GV PG A R S T E SP + E L R EVG A+QE+++AR+RRR K+LP + RGM+++ ++ A GV GRS SLS R+S SLCFT E GD + S S+ S SPR + + + G ++DE TGSS G P+RAL QALEDASSRSSLL DAD STP SK+GS S+G + D R E + PP +A +DE G D G S+LPLS ++EP+LA +P LP E+ L +RCA N A A R +S P G AR+ F+ A+RA+E+ A + A +A + + E + + + + TQ G +S VE + V P + A PF S + GV+GL+ QY E+VEGGQRSPV+FVVRTVPEAIRD+A D GK + D+H+RA A V+AAIVSGLT++P EL A HR + AG S + A PA+QK+RD+QLQALL+CQ+N+LAMDLP+ P++L F+ALA S + D + +G K K XXXXXXXX K S P RP DPLP+ RR RL +LQPISTMLDACTVTK P G K GG G GF RAYDGTLADFMGL LVEHFA+RLPRTLGALFDDFE HPP+ALT L A SC SG + +GG VE+ + G D V XXXXXXXXXXXXX + G+SS +AGILLSDRT+MSHNHFKMSGVLNGFREVKLK A GG R V + R G QDG WR+S+ G R R+ RDS T P T + VR+SPRL RKRP AD D +SD ++P T A+ R++ P + I+ RT GVLV ETPRKRP R+ R GG R+ H G SP A+ T S EG P+ SP + AA+P + RAT + AS + LFV ESP GA +A R S A + G+ RQLM E+A SP +RR VVPDTP
Sbjct: 255 LLVLHSAFPHADNDAQQFVLGGNFTSEATTINNVELPDDKASALDNLLNGHLGKAIIRARSLGVSFLWQDGAPSNAVGGGDNGRGGAS-------RDRSIVRRCLSAAGSSGILHWGQVVGCTGLLPPSAALGQQLAPQSARYRDAEIRKGGDVQERADNAVVAVALNQRGVVDLHLVASKVSGFADPCDLSMLSGGGGGANAALPPSVDGTASNVTPWRLMGTIPVDEVWPSSLLGQGWGTTRVLKVEGGRGAQLWRCFLRDLVAGELAGVIALPRRLFVCDAQPNSGSLGREGCLPEALTVALLVPVSGECAVCFS------ARGVEPTVPGGEEADSGPRALDGRGSTGFTHEE-SPLAAHACDGRLRAESALLGRGKEVGLAMQEASLARKRRRQAKSLPGKGARGMNNSGSSLA--GVDXXXXXXXXGRSASLSQRDSGSLCFTAEGASGDGAAACDVRQWRLEMASVTSHGSASPRGLRLFASTPGGAEDDEXXXXTGSSSGGPKRALCQALEDASSRSSLLGPDADSSSTPESKDGSGWSTGTAADATVSRHRGQSESVFPPVG----------NAGEDETGLLDS---DDGTASELPLSLVSEPALASIPRRVLPAELAALAKRCARSNACLAPAGEAGMANASSSGGACVRTDLGTLKSRNPSPQQVG-----ARQRFVEAVRALERSRQVADSSTAVSAVAACAAEEAAVGLDVEAKDPLDQRSVPGVQDSVRHATQLGG--QSGSVEGSRVDPPDGASCPFEGS-----IRKGVAGLQLQYREVVEGGQRSPVDFVVRTVPEAIRDIA------DCGKDVISTGHSTDDQHTRA-AQVLAAIVSGLTSTPSELRANHRGRRS--------AGASVEGGGASAAAAKPAVQKIRDYQLQALLLCQVNSLAMDLPETPDSLVAFSALA-----SGEMGDPTDDKGRKSKX-----------XXXXXXXXXKGGPSIPARPSDPLPDCRRMRLVDYLQPISTMLDACTVTK--PXXXXXXGGRAKVDGGVGKTKGFESRAYDGTLADFMGLALVEHFAARLPRTLGALFDDFECHPPDALTTVLTGAPPSDSCLDTSGA------IAEGGEVEQASSK--------GTDDVVGGXXXXXXXXXXXXXXXXPPSSWRGISS----TAGILLSDRTAMSHNHFKMSGVLNGFREVKLKGPTAPRGGFRQNV----------LGRVSGNDQGELAGSGQDGEWRRSNGXXXXRRGGRSRATRDSNQTSGPGKHPQSPATKPPPMVGVRHSPRLNRKRPG---------ADTD-----ESDVVRTIP-ETAAASVYTPTRKRRPAAAAVENDSDIA---------------RTGGGVLVGETPRKRPGTGADTARSSSRRGG--RAGPTATAHNVAGAGPSSPVASGTGSRKQPSKKEGKIIPEEAHIPCSPGLLMASPAAAPTKRRRAT------------------------------ASGPASPTESLFVAESP-GASTGSARRSGRIASSGVAADRD------GVSRQLMAESAVSPSARRRGGVVPDTP 1661 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5510.12986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5510.12986.1 >prot_H-paniculata_contig5510.12986.1 ID=prot_H-paniculata_contig5510.12986.1|Name=mRNA_H-paniculata_contig5510.12986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1511bp MLHTAFPKTEQEVECFALRGNFTTEARMVATKPPDVRATALMQALNAGLAback to top mRNA from alignment at H-paniculata_contig5510:5999..13812- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5510.12986.1 ID=mRNA_H-paniculata_contig5510.12986.1|Name=mRNA_H-paniculata_contig5510.12986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7814bp|location=Sequence derived from alignment at H-paniculata_contig5510:5999..13812- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5510:5999..13812- >mRNA_H-paniculata_contig5510.12986.1 ID=mRNA_H-paniculata_contig5510.12986.1|Name=mRNA_H-paniculata_contig5510.12986.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9066bp|location=Sequence derived from alignment at H-paniculata_contig5510:5999..13812- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |