mRNA_H-paniculata_contig55089.12981.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55089.12981.1
Unique NamemRNA_H-paniculata_contig55089.12981.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55089.12981.1 vs. uniprot
Match: A0A165M5Y1_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165M5Y1_9AGAM)

HSP 1 Score: 52.8 bits (125), Expect = 1.840e-6
Identity = 29/87 (33.33%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:    7 HWNSDIGATDHMTSDETACEDYTPAFPGTMCEIANGTFVPVEGWGRLALRVSQPGGKSRVAMLNRVAHVPELGRNLISIRRATDISG 267
            +WN+D GAT HMT        Y+P        + N T +   G G +   +     K+ V +L+ V HVP+LG NL+S+   T   G
Sbjct:   62 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLTNDTIIYTAGMGSVMFELVLGESKAPVVVLHNVLHVPQLGSNLLSVYHLTKTKG 146
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BLAST of mRNA_H-paniculata_contig55089.12981.1 vs. uniprot
Match: A0A6P4MA83_GOSAR (uncharacterized protein LOC108458679 n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4MA83_GOSAR)

HSP 1 Score: 52.8 bits (125), Expect = 7.010e-6
Identity = 30/82 (36.59%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:   10 WNSDIGATDHMTSDETACEDYTPAFPGTMCEIANGTFVPVEGWGRLALRVSQPGGKSRVAMLNRVAHVPELGRNLISIRRAT 255
            W  D GA DHM  + T  + YTP    +   IA+G++ PV G G++ L        ++   L+ V HVP L  NL+SI + T
Sbjct:  203 WILDSGAFDHMIGNSTLFQTYTPCHNQSRIHIADGSYSPVAGVGKIQL--------TKKNSLDEVLHVPNLSCNLLSISKLT 276
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BLAST of mRNA_H-paniculata_contig55089.12981.1 vs. uniprot
Match: A0A165MYY0_9AGAM (Uncharacterized protein (Fragment) n=10 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165MYY0_9AGAM)

HSP 1 Score: 51.6 bits (122), Expect = 8.850e-6
Identity = 30/87 (34.48%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:    7 HWNSDIGATDHMTSDETACEDYTPAFPGTMCEIANGTFVPVEGWGRLALRVSQPGGKSRVAMLNRVAHVPELGRNLISIRRATDISG 267
            +WN+D GAT HMT        Y+P        +AN T +   G G +         K+ V +L+ V HVP+LG NL+S+   T   G
Sbjct:   99 NWNTDTGATSHMTPHRHWFASYSPHI--IPVRLANDTSIYTAGMGSVMFEPVLGESKAPVVVLHDVLHVPQLGSNLLSVYHLTKTKG 183
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BLAST of mRNA_H-paniculata_contig55089.12981.1 vs. uniprot
Match: A0A5N5FYS5_9ROSA (Integrase catalytic domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FYS5_9ROSA)

HSP 1 Score: 50.4 bits (119), Expect = 4.970e-5
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 1 
Query:   10 WNSDIGATDHMTSDETACEDYTPAFPGTMCEIANGTFVPVEGWGRLALRVSQPGGKSRVAMLNRVAHVPELGRNLISIRR 249
            W  D GA+ H+TSD +A    TP        I NGT +P++  G   L+       +   +LN+V HVP + R+L+S+++
Sbjct:  235 WIVDAGASHHITSDISALSQVTPFEGSEKITIGNGTGLPIKNIGSTTLQTP-----THSLVLNKVLHVPNIARSLLSVKQ 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55089.12981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A165M5Y1_9AGAM1.840e-633.33Uncharacterized protein (Fragment) n=1 Tax=Neolent... [more]
A0A6P4MA83_GOSAR7.010e-636.59uncharacterized protein LOC108458679 n=1 Tax=Gossy... [more]
A0A165MYY0_9AGAM8.850e-634.48Uncharacterized protein (Fragment) n=10 Tax=Neolen... [more]
A0A5N5FYS5_9ROSA4.970e-533.75Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55089contigH-paniculata_contig55089:209..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.9001222-CDS-H-paniculata_contig55089:208..4991622930575.9001222-CDS-H-paniculata_contig55089:208..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55089 209..499 +
1691481355.4485724-CDS-H-paniculata_contig55089:208..4991691481355.4485724-CDS-H-paniculata_contig55089:208..499Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55089 209..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55089.12981.1prot_H-paniculata_contig55089.12981.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55089 209..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55089.12981.1

>prot_H-paniculata_contig55089.12981.1 ID=prot_H-paniculata_contig55089.12981.1|Name=mRNA_H-paniculata_contig55089.12981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
KEHWNSDIGATDHMTSDETACEDYTPAFPGTMCEIANGTFVPVEGWGRLA
LRVSQPGGKSRVAMLNRVAHVPELGRNLISIRRATDISGKSFIYSAN
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mRNA from alignment at H-paniculata_contig55089:209..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55089.12981.1 ID=mRNA_H-paniculata_contig55089.12981.1|Name=mRNA_H-paniculata_contig55089.12981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig55089:209..499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACACTGGAATTCAGACATCGGCGCGACAGACCACATGACGTCGGA
TGAGACTGCGTGCGAGGACTACACTCCAGCGTTCCCGGGGACCATGTGTG
AAATCGCCAACGGGACATTCGTGCCTGTAGAGGGGTGGGGACGCCTTGCG
CTTCGAGTAAGTCAACCGGGGGGAAAATCAAGGGTAGCAATGTTAAACAG
GGTTGCCCACGTACCCGAGCTCGGGCGCAACTTAATCTCCATACGCCGAG
CAACAGATATATCGGGTAAATCGTTCATATACAGTGCCAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig55089:209..499+

>mRNA_H-paniculata_contig55089.12981.1 ID=mRNA_H-paniculata_contig55089.12981.1|Name=mRNA_H-paniculata_contig55089.12981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig55089:209..499+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAACACTGGAATTCAGACATCGGCGCGACAGACCACATGACGTCGGA
TGAGACTGCGTGCGAGGACTACACTCCAGCGTTCCCGGGGACCATGTGTG
AAATCGCCAACGGGACATTCGTGCCTGTAGAGGGGTGGGGACGCCTTGCG
CTTCGAGTAAGTCAACCGGGGGGAAAATCAAGGGTAGCAATGTTAAACAG
GGTTGCCCACGTACCCGAGCTCGGGCGCAACTTAATCTCCATACGCCGAG
CAACAGATATATCGGGTAAATCGTTCATATACAGTGCCAACAAGGAACAC
TGGAATTCAGACATCGGCGCGACAGACCACATGACGTCGGATGAGACTGC
GTGCGAGGACTACACTCCAGCGTTCCCGGGGACCATGTGTGAAATCGCCA
ACGGGACATTCGTGCCTGTAGAGGGGTGGGGACGCCTTGCGCTTCGAGTA
AGTCAACCGGGGGGAAAATCAAGGGTAGCAATGTTAAACAGGGTTGCCCA
CGTACCCGAGCTCGGGCGCAACTTAATCTCCATACGCCGAGCAACAGATA
TATCGGGTAAATCGTTCATATACAGTGCCAAC
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