prot_H-paniculata_contig55075.12979.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig55075.12979.1
Unique Nameprot_H-paniculata_contig55075.12979.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: D8LN22_ECTSI (PFfh, plastid Ffh subunit of the signal recognition particle n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN22_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-21
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLAK 58
            GVT +QQF+ VMNDEL+E+MG+ QAPLARR DG PTVIL+AGLQGTGKTTAAAKLAK
Sbjct:  161 GVTAKQQFVNVMNDELVEIMGAEQAPLARRTDGKPTVILLAGLQGTGKTTAAAKLAK 217          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A835YMH5_9STRA (SRP54-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMH5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.740e-18
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARR-EDGNPTVILMAGLQGTGKTTAAAKLAK 58
            GVTP QQF+K+M DEL++VMGS QAPLAR  ++G P VIL+AGLQG GKTTAAAKLAK
Sbjct:  126 GVTPDQQFVKIMYDELVKVMGSQQAPLARSTKEGEPVVILLAGLQGAGKTTAAAKLAK 183          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI00034547B1 (signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7336 TaxID=195250 RepID=UPI00034547B1)

HSP 1 Score: 82.8 bits (203), Expect = 4.200e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGN-PTVILMAGLQGTGKTTAAAKLA 57
            GV+P QQF+K++NDEL++VMG A APL +  DG  PT++LMAGLQGTGKTTAAAKLA
Sbjct:   67 GVSPDQQFVKIVNDELVKVMGEANAPLNQAADGTGPTIVLMAGLQGTGKTTAAAKLA 123          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A2V3IRY4_9FLOR (Signal recognition particle protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRY4_9FLOR)

HSP 1 Score: 82.0 bits (201), Expect = 7.730e-17
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            GV P Q  IK+M++EL E+MG  QAPLA+R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct:   68 GVDPGQMLIKIMHEELTEIMGKDQAPLAKRSDGQPTVVLLAGLQGAGKTTAAAKLA 123          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A6P2AV24_9CYAN (Signal recognition particle protein n=1 Tax=Spirulina sp. DLM2.Bin59 TaxID=2480215 RepID=A0A6P2AV24_9CYAN)

HSP 1 Score: 81.3 bits (199), Expect = 1.460e-16
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            AGV P QQFIKV++DEL+E+MG++ APLA  E   PTVILMAGLQGTGKTTA AKLA
Sbjct:   66 AGVRPDQQFIKVVHDELVEIMGASNAPLAHAETA-PTVILMAGLQGTGKTTATAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: R7QHF1_CHOCR (Signal recognition particle SRP54 homolog ffh n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHF1_CHOCR)

HSP 1 Score: 80.5 bits (197), Expect = 2.670e-16
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            GV P Q  +K+M++EL ++MGS QAPLA R DG PTV+L+AGLQG GKTTAAAKLA
Sbjct:   52 GVEPGQMLVKIMHEELTKIMGSNQAPLANRTDGEPTVVLLAGLQGAGKTTAAAKLA 107          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: K9SYP3_9SYNE (Signal recognition particle protein n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SYP3_9SYNE)

HSP 1 Score: 79.7 bits (195), Expect = 5.070e-16
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            AGV P QQFIK++ DEL++VMGS  APLA  E   PTVILMAGLQGTGKTTA+AKLA
Sbjct:   66 AGVRPDQQFIKIVYDELVQVMGSENAPLAEAETA-PTVILMAGLQGTGKTTASAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: A0A651DTD4_9CYAN (Signal recognition particle protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A651DTD4_9CYAN)

HSP 1 Score: 79.7 bits (195), Expect = 5.170e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            +GV P QQFIK++ D+L+EVMG   APLA+ E+G PT++LMAGLQGTGKTTA+AKLA
Sbjct:   66 SGVRPDQQFIKLVYDQLVEVMGETNAPLAQAEEG-PTIVLMAGLQGTGKTTASAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0002ACC538 (signal recognition particle protein n=1 Tax=Leptolyngbya sp. PCC 6406 TaxID=1173264 RepID=UPI0002ACC538)

HSP 1 Score: 79.7 bits (195), Expect = 5.180e-16
Identity = 38/56 (67.86%), Postives = 49/56 (87.50%), Query Frame = 0
Query:    2 GVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            G+ P QQFIK++NDEL+++MG + +PLA+ + G PTV+LMAGLQGTGKTTAAAKLA
Sbjct:   67 GINPGQQFIKIVNDELVKLMGESNSPLAQADSG-PTVVLMAGLQGTGKTTAAAKLA 121          
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Match: UPI0019F74F5C (Signal recognition particle protein n=1 Tax=Leptolyngbyaceae cyanobacterium T60_A2020_046 TaxID=2747813 RepID=UPI0019F74F5C)

HSP 1 Score: 79.7 bits (195), Expect = 5.190e-16
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    1 AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKTTAAAKLA 57
            AGV P QQFIK++NDEL+++MG   APLA   D  PTV+LMAGLQGTGKTTAAAKLA
Sbjct:   66 AGVNPGQQFIKIVNDELVKLMGDTNAPLAHA-DTAPTVVLMAGLQGTGKTTAAAKLA 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55075.12979.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN22_ECTSI1.430e-2180.70PFfh, plastid Ffh subunit of the signal recognitio... [more]
A0A835YMH5_9STRA6.740e-1874.14SRP54-type protein n=1 Tax=Tribonema minus TaxID=3... [more]
UPI00034547B14.200e-1770.18signal recognition particle protein n=1 Tax=Synech... [more]
A0A2V3IRY4_9FLOR7.730e-1769.64Signal recognition particle protein n=1 Tax=Gracil... [more]
A0A6P2AV24_9CYAN1.460e-1673.68Signal recognition particle protein n=1 Tax=Spirul... [more]
R7QHF1_CHOCR2.670e-1667.86Signal recognition particle SRP54 homolog ffh n=1 ... [more]
K9SYP3_9SYNE5.070e-1673.68Signal recognition particle protein n=1 Tax=Synech... [more]
A0A651DTD4_9CYAN5.170e-1668.42Signal recognition particle protein n=3 Tax=Cyanob... [more]
UPI0002ACC5385.180e-1667.86signal recognition particle protein n=1 Tax=Leptol... [more]
UPI0019F74F5C5.190e-1671.93Signal recognition particle protein n=1 Tax=Leptol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042101Signal recognition particle SRP54, N-terminal domain superfamilyGENE3D1.20.120.140coord: 2..24
e-value: 1.1E-15
score: 59.4
IPR000897Signal recognition particle, SRP54 subunit, GTPase domainPFAMPF00448SRP54coord: 36..58
e-value: 6.9E-6
score: 25.8
NoneNo IPR availablePIRSFPIRSF0007096PFK_fruc_bisph_Ptasecoord: 2..58
e-value: 0.0018
score: 14.7
NoneNo IPR availableGENE3D3.40.50.300coord: 25..58
e-value: 1.1E-15
score: 59.4
NoneNo IPR availablePANTHERPTHR11564:SF27coord: 1..57
IPR022941Signal recognition particle, SRP54 subunitPANTHERPTHR11564GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINScoord: 1..57
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55075contigH-paniculata_contig55075:143..319 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55075.12979.1mRNA_H-paniculata_contig55075.12979.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig55075 143..319 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig55075.12979.1 ID=prot_H-paniculata_contig55075.12979.1|Name=mRNA_H-paniculata_contig55075.12979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
AGVTPQQQFIKVMNDELIEVMGSAQAPLARREDGNPTVILMAGLQGTGKT
TAAAKLAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042101SRP54_N_sf
IPR000897SRP54_GTPase_dom
IPR022941SRP54
IPR027417P-loop_NTPase