mRNA_H-paniculata_contig55063.12977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55063.12977.1
Unique NamemRNA_H-paniculata_contig55063.12977.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.230e-45
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQV 273
            Y++V+RDC+LE+DLSLLPSGD TGIGDRGVNLSGGQKARVGLARMAYA AD Y+MDDPLSAVDPAVGRELFSKVVCGRL GSTR+LVTHQV
Sbjct:  680 YDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQV 770
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.230e-45
Identity = 80/91 (87.91%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQV 273
            Y++V+RDC+LE+DLSLLPSGD TGIGDRGVNLSGGQKARVGLARMAYA AD Y+MDDPLSAVDPAVGRELFSKVVCGRL GSTR+LVTHQV
Sbjct:  495 YDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQV 585
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 8.210e-45
Identity = 79/91 (86.81%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQV 273
            Y++V+RDC+LE+DLSLLPSGD TGIGD+GVNLSGGQKARVGLARMAYA AD Y+MDDPLSAVDPAVGRELFSKVVCGRL GSTR+LVTHQV
Sbjct:  543 YDAVIRDCALERDLSLLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVVCGRLKGSTRVLVTHQV 633
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.870e-44
Identity = 79/91 (86.81%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQV 273
            Y++V+RDC+LE+DLSLLPSGD TGIGDRGVNLSGGQKARVGLARMAYA AD Y+MDDPLSAVDPAVGRELFSKVVCGRL  STR+LVTHQV
Sbjct:  511 YDAVIRDCALERDLSLLPSGDQTGIGDRGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRELFSKVVCGRLKESTRVLVTHQV 601
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.580e-42
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQV 273
            Y++V+RDC+LE+DLS LPSGD TGIGD+GVNLSGGQKARVGLARMAYA AD Y+MDDPLSAVDPAVGR+LFS+VV GRL GSTR+LVTHQV
Sbjct:  464 YDAVIRDCALERDLSFLPSGDQTGIGDKGVNLSGGQKARVGLARMAYAHADTYLMDDPLSAVDPAVGRKLFSQVVSGRLKGSTRVLVTHQV 554
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.460e-34
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVR 276
            Y +V+  C L +DLS+LP GDMT IGDRGVNLSGGQ+ARVGLAR+AYA   +Y++DDPLSAVDP VGR LF  VVCG LAG TR+LVTHQ++
Sbjct:  823 YEAVLDACELRRDLSMLPDGDMTLIGDRGVNLSGGQRARVGLARVAYADVPLYLLDDPLSAVDPKVGRHLFKHVVCGLLAGKTRVLVTHQLQ 914
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: S4PPH3_9NEOP (Putative multidrug resistance-associated protein lethal(2)03659 (Fragment) n=9 Tax=Nymphalidae TaxID=33415 RepID=S4PPH3_9NEOP)

HSP 1 Score: 119 bits (298), Expect = 6.180e-33
Identity = 56/92 (60.87%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVR 276
            YN+VVR C+L++D +LLP GD T +G+RGV+LSGGQ+AR+ LAR  Y RAD+Y++DDPLSAVD  VGR LF   V G L  +TR+LVTHQ++
Sbjct:    6 YNTVVRRCALDRDFTLLPHGDKTVVGERGVSLSGGQRARISLARAVYKRADIYLLDDPLSAVDAHVGRHLFESCVVGYLRNTTRVLVTHQLQ 97
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: A0A699Z281_HAELA (ABC transporter domain-containing protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z281_HAELA)

HSP 1 Score: 118 bits (295), Expect = 2.440e-32
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVR 276
            Y SV+  C+L  DL +L +GD T IG++GVNLSGGQK RV LAR AY+ AD+Y++DDPLSAVD  VGR LF   +CG LAGSTR+LVTHQ++
Sbjct:   29 YTSVLAACALGPDLEVLAAGDATEIGEKGVNLSGGQKHRVALARAAYSGADIYLLDDPLSAVDAHVGRHLFDMCLCGLLAGSTRILVTHQLQ 120
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: A0A1X7SPK3_AMPQE (ABC transporter domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SPK3_AMPQE)

HSP 1 Score: 119 bits (299), Expect = 9.860e-32
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVR 276
            Y SV+  C+LEKD+ LLP GD+T +G+RGV LSGGQKARV LAR  Y +ADVY++DDPLSAVD AV R LF + +CG L+    +LVTHQV+
Sbjct:   35 YESVIEACALEKDIELLPEGDLTLVGERGVTLSGGQKARVNLARAVYRQADVYLLDDPLSAVDAAVSRHLFERCICGILSDKIVILVTHQVQ 126
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BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Match: M1KZL8_9CRUS (Putative multidrug resistance protein 4 (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=M1KZL8_9CRUS)

HSP 1 Score: 116 bits (290), Expect = 1.450e-31
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARADVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVR 276
            Y  V++ C+L+KD SL P+GD T +G+RGV+LSGGQKARV LAR  Y  AD+Y+MDDPLSAVD  VGR LF K + G L    R+LVTHQ++
Sbjct:   38 YKKVIKACALDKDFSLFPNGDQTAVGERGVSLSGGQKARVNLARSLYVDADIYLMDDPLSAVDTHVGRHLFDKAINGYLRDKIRVLVTHQLQ 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55063.12977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW6_ECTSI3.230e-4587.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDN6_9PHAE3.230e-4587.91ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LSW4_ECTSI8.210e-4586.81Multidrug resistance-associated protein-like prote... [more]
D8LSW3_ECTSI3.870e-4486.81Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDL0_9PHAE7.580e-4282.42ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YMC7_9STRA9.460e-3469.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S4PPH3_9NEOP6.180e-3360.87Putative multidrug resistance-associated protein l... [more]
A0A699Z281_HAELA2.440e-3263.04ABC transporter domain-containing protein n=1 Tax=... [more]
A0A1X7SPK3_AMPQE9.860e-3261.96ABC transporter domain-containing protein n=1 Tax=... [more]
M1KZL8_9CRUS1.450e-3159.78Putative multidrug resistance protein 4 (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55063contigH-paniculata_contig55063:606..884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue1.9e-38
Seed eggNOG ortholog2880.D8LSW6
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.321973-CDS-H-paniculata_contig55063:605..8841622930575.321973-CDS-H-paniculata_contig55063:605..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55063 606..884 -
1691481355.1493614-CDS-H-paniculata_contig55063:605..8841691481355.1493614-CDS-H-paniculata_contig55063:605..884Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55063 606..884 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55063.12977.1prot_H-paniculata_contig55063.12977.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55063 606..884 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55063.12977.1

>prot_H-paniculata_contig55063.12977.1 ID=prot_H-paniculata_contig55063.12977.1|Name=mRNA_H-paniculata_contig55063.12977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
YNSVVRDCSLEKDLSLLPSGDMTGIGDRGVNLSGGQKARVGLARMAYARA
DVYVMDDPLSAVDPAVGRELFSKVVCGRLAGSTRLLVTHQVRV
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mRNA from alignment at H-paniculata_contig55063:606..884-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55063.12977.1 ID=mRNA_H-paniculata_contig55063.12977.1|Name=mRNA_H-paniculata_contig55063.12977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at H-paniculata_contig55063:606..884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAACTCGGTAGTACGGGACTGCTCCCTAGAAAAAGACCTATCCTTGCT
TCCCTCCGGAGACATGACCGGGATCGGGGATCGAGGCGTCAACCTGTCCG
GCGGGCAAAAGGCTAGGGTGGGCCTGGCGCGCATGGCGTACGCCAGGGCA
GACGTGTACGTGATGGACGATCCGCTGTCGGCTGTGGATCCCGCCGTGGG
ACGGGAGCTTTTCTCGAAAGTGGTGTGCGGGAGGCTCGCGGGCAGCACCA
GGCTTCTCGTCACGCATCAGGTGCGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig55063:606..884-

>mRNA_H-paniculata_contig55063.12977.1 ID=mRNA_H-paniculata_contig55063.12977.1|Name=mRNA_H-paniculata_contig55063.12977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig55063:606..884- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAACTCGGTAGTACGGGACTGCTCCCTAGAAAAAGACCTATCCTTGCT
TCCCTCCGGAGACATGACCGGGATCGGGGATCGAGGCGTCAACCTGTCCG
GCGGGCAAAAGGCTAGGGTGGGCCTGGCGCGCATGGCGTACGCCAGGGCA
GACGTGTACGTGATGGACGATCCGCTGTCGGCTGTGGATCCCGCCGTGGG
ACGGGAGCTTTTCTCGAAAGTGGTGTGCGGGAGGCTCGCGGGCAGCACCA
GGCTTCTCGTCACGCATCAGGTGCGTGTGTACAACTCGGTAGTACGGGAC
TGCTCCCTAGAAAAAGACCTATCCTTGCTTCCCTCCGGAGACATGACCGG
GATCGGGGATCGAGGCGTCAACCTGTCCGGCGGGCAAAAGGCTAGGGTGG
GCCTGGCGCGCATGGCGTACGCCAGGGCAGACGTGTACGTGATGGACGAT
CCGCTGTCGGCTGTGGATCCCGCCGTGGGACGGGAGCTTTTCTCGAAAGT
GGTGTGCGGGAGGCTCGCGGGCAGCACCAGGCTTCTCGTCACGCATCAGG
TGCGTGTG
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