mRNA_H-paniculata_contig5505.12975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5505.12975.1
Unique NamemRNA_H-paniculata_contig5505.12975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5505.12975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5505contigH-paniculata_contig5505:6399..7139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size741
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5505.12975.1prot_H-paniculata_contig5505.12975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5505 6406..6780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.1710782-UTR-H-paniculata_contig5505:6398..64051622930575.1710782-UTR-H-paniculata_contig5505:6398..6405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5505 6399..6405 +
1691481355.1073394-UTR-H-paniculata_contig5505:6398..64051691481355.1073394-UTR-H-paniculata_contig5505:6398..6405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5505 6399..6405 +
1622930575.215603-UTR-H-paniculata_contig5505:6780..71391622930575.215603-UTR-H-paniculata_contig5505:6780..7139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5505 6781..7139 +
1691481355.1298478-UTR-H-paniculata_contig5505:6780..71391691481355.1298478-UTR-H-paniculata_contig5505:6780..7139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5505 6781..7139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930575.1955314-CDS-H-paniculata_contig5505:6405..67801622930575.1955314-CDS-H-paniculata_contig5505:6405..6780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5505 6406..6780 +
1691481355.1162982-CDS-H-paniculata_contig5505:6405..67801691481355.1162982-CDS-H-paniculata_contig5505:6405..6780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5505 6406..6780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5505.12975.1

>prot_H-paniculata_contig5505.12975.1 ID=prot_H-paniculata_contig5505.12975.1|Name=mRNA_H-paniculata_contig5505.12975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MARFPVTLRAVAGCSLRLQSSPARWSLIYSCRLRRRPRPDLHSQPRVVFL
SALALSVARALHPPVSEFSPSVTRPAESTALRRGVCLLRCPRSGALALLS
PRTPAADLLIDTQWRRRLPQGFLC*
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mRNA from alignment at H-paniculata_contig5505:6399..7139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5505.12975.1 ID=mRNA_H-paniculata_contig5505.12975.1|Name=mRNA_H-paniculata_contig5505.12975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=741bp|location=Sequence derived from alignment at H-paniculata_contig5505:6399..7139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGAATGGCGCGGTTCCCTGTCACCTTGCGTGCGGTCGCCGGCTGCT
CCCTTCGTCTGCAGTCGAGTCCGGCTCGCTGGTCCCTTATTTACAGTTGC
CGCCTTCGCCGGCGCCCTCGGCCCGACCTGCACAGTCAGCCACGAGTTGT
CTTTCTTTCCGCCTTGGCCCTTTCCGTTGCTCGGGCACTCCACCCTCCTG
TATCCGAATTCTCCCCAAGCGTGACACGTCCCGCGGAAAGCACCGCTCTG
CGTCGGGGCGTGTGCCTTCTGCGGTGCCCTCGCAGCGGCGCCCTTGCTCT
GTTGTCCCCCCGCACTCCTGCTGCCGACCTACTAATTGATACTCAATGGC
GCAGGCGGCTTCCTCAAGGGTTTCTTTGTTGATACCCTTAGGAGGCTCTC
AGCTTCTTCAAACTTGGACGCCAAATTATCCATGATCTCCGAGAGTTCGT
CAGGATTATTTCCAACATCGTTCAGCAGCACCCGCTGCCGAACCTCCTCC
TGGTACTCCGGCGGGTACAGCCCATCCAGCATCCATCGGACGACCTCTCG
CCCGATTCCCGGCATCCACTTGTTATCCGGCTTCATCTTTGCCTTCAGGC
TAGTACGGGTCGGGTACCCCACAAGTTCCCCGAGGACTTGCGAGACCCCA
TCGCCTATGCCAAACTTTGGGTCCATGCGCAGTCTGGGAGCCCAATCCAC
TCCGTCTTCAAGCGGCCCAGGTCTACCTCCTCCTCTTCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig5505:6399..7139+

>mRNA_H-paniculata_contig5505.12975.1 ID=mRNA_H-paniculata_contig5505.12975.1|Name=mRNA_H-paniculata_contig5505.12975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig5505:6399..7139+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCGGTTCCCTGTCACCTTGCGTGCGGTCGCCGGCTGCTCCCTTCG
TCTGCAGTCGAGTCCGGCTCGCTGGTCCCTTATTTACAGTTGCCGCCTTC
GCCGGCGCCCTCGGCCCGACCTGCACAGTCAGCCACGAGTTGTCTTTCTT
TCCGCCTTGGCCCTTTCCGTTGCTCGGGCACTCCACCCTCCTGTATCCGA
ATTCTCCCCAAGCGTGACACGTCCCGCGGAAAGCACCGCTCTGCGTCGGG
GCGTGTGCCTTCTGCGGTGCCCTCGCAGCGGCGCCCTTGCTCTGTTGTCC
CCCCGCACTCCTGCTGCCGACCTACTAATTGATACTCAATGGCGCAGGCG
GCTTCCTCAAGGGTTTCTTTGTTGAATGGCGCGGTTCCCTGTCACCTTGC
GTGCGGTCGCCGGCTGCTCCCTTCGTCTGCAGTCGAGTCCGGCTCGCTGG
TCCCTTATTTACAGTTGCCGCCTTCGCCGGCGCCCTCGGCCCGACCTGCA
CAGTCAGCCACGAGTTGTCTTTCTTTCCGCCTTGGCCCTTTCCGTTGCTC
GGGCACTCCACCCTCCTGTATCCGAATTCTCCCCAAGCGTGACACGTCCC
GCGGAAAGCACCGCTCTGCGTCGGGGCGTGTGCCTTCTGCGGTGCCCTCG
CAGCGGCGCCCTTGCTCTGTTGTCCCCCCGCACTCCTGCTGCCGACCTAC
TAATTGATACTCAATGGCGCAGGCGGCTTCCTCAAGGGTTTCTTTGTTGA
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