mRNA_H-paniculata_contig5503.12972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5503.12972.1
Unique Name	mRNA_H-paniculata_contig5503.12972.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 295 bits (755), Expect = 1.850e-91
Identity = 140/282 (49.65%), Postives = 197/282 (69.86%), Query Frame = 1

Query:   40 ALGLILSVGVAHGA-LDLGNLPSLPILATEDGAEYTYR-TTTDQVEPYGPSEWHIGYPECGGDRQSPINLSAAIEESVKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYV 879
            ++  +L  G+A G  L+    P          AE+TYR T+T+  +PYGPS+WH GYP+CG   QSPI+L+A +E  VK S Y+L+F+P  C SDEL F+  +  +++ +  CS+ P + F+G  YNLLQ+H+HS SEH IG + H AE+H VH++EG+E +LLV+GVL D+ +YG N +IE LW VL++GE+  T  VF +  YD++PS P ++HY+GSLTTPPCTEGVKW+V + P+ MS +QL ++R  V+L D +KVDEHGNTNRP Q LN R + +V
Sbjct:    8 SIAFMLLSGIAQGVPLERKLAPKKGGGGEPAAAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETT-TKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 5.710e-74
Identity = 122/270 (45.19%), Postives = 179/270 (66.30%), Query Frame = 1

Query:   76 GALDLGNLPSLPILATEDGAEYTYRTT-TDQVEPYGPSEWHIGYPECGGDRQSPINLSAAIEESVKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYVS 882
            G L L NL        E  AE+TYR T     EPYGP +W++GYP+C G +Q+PIN++A +  +    E  + FFP+ C+S EL F+     ++VD+S C++AP L ++G  YNLLQ H+HS SEH +G   H AE+HLVHL++ +   LLV+G++ + ++YG N ++E +W+V++L + +  +  F ++ Y +LP+TP++  Y GSLTTPPCTEGV+W++ ++P  MS  QL  YR  V+L + +KV E G TNRP Q LNGR V YVS
Sbjct:   29 GGLRLRNLAETD---DEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQ-FMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 294

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 249 bits (635), Expect = 1.120e-73
Identity = 120/252 (47.62%), Postives = 174/252 (69.05%), Query Frame = 1

Query:  136 EYTYRTTTDQVE-PYGPSEWHIGYPECGGDRQSPINLSAAIEESVKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQE---GSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYV 879
            ++TYR  + + E PY PS+W IGYP+CGGD QSPINLSA +   V+A+E++L  F   C+S EL FE   H +++D+S C+   +L F+G  Y+LLQ+H+HS SEH +  + HDAE+HLVH ++   G+E+ELLV+GV +D+ E+G N  +E LW VL  G + P   +   +PY+++PS   Y+HY+GSLTTPPC+E V+W+V + P ++ DLQL  +R  V+   +++VDE  NTNRP Q +NGR V  V
Sbjct:   48 DWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSG-AKPRGVI---NPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.050e-44
Identity = 75/143 (52.45%), Postives = 108/143 (75.52%), Query Frame = 1

Query:  454 IGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYVS 882
            IG + H+AE+H VH++ G++ +LLV+GVL D+ +YG N +IE LW VL++G+   TD VF +  YD++PS P ++HY+GSLTTPPCTEGVKW+V + P+ M  +QL ++R  V+L D++KVDE GNTNRP Q LN R + +V+
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPT-TDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFVN 143

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 139 bits (351), Expect = 1.280e-33
Identity = 89/258 (34.50%), Postives = 129/258 (50.00%), Query Frame = 1

Query:  190 WHIGYPECGGDRQSPINLSAAIEES-------VKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSS-CSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDS-AEYGDNEQIEELWSVLNL--GESMPTDHVFESS--------------------PYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTV 870
            W   YP+C G RQSPIN++  I  +         A  +D+     +C  D+L ++     + V +   C   P++   G  +NLLQ H+HSVSEH IG  ++DAE+H VH      T L V+GV+I S ++   N +  + W  +    G+      + E S                    PY MLP+  TY +Y+GSLTTPPC+E V W+V  + I +S  QL+ +R  +   +   VD +GN  RP QP NGR V
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMG----ACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 255

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 141 bits (355), Expect = 2.510e-33
Identity = 92/280 (32.86%), Postives = 134/280 (47.86%), Query Frame = 1

Query:  139 YTYRTTTDQVEPYGPSEWHIGYPECGGDRQSPINLSAAIEES-------VKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSS-CSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDS-------------AEY-----GDNEQIEELWSV----------LNLGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTV 870
            Y Y    ++     P  W   YP+C G RQSPIN++  I  +         A  +D+      C  D+L ++     + V +   C   P++   G  +NLLQ H+HSVSEH IG  ++DAE+H VH      T L V+GV+I S             AE+     G  +   E+              ++  S     + + +PY MLP+  TY +Y+GSLTTPPC+E V W+V  + I +S  QL+ +R  +   +   VD +GN  RP QP NGR V
Sbjct:   61 YNYECNYEEHGQVAPDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGM----CMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 336

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.370e-32
Identity = 88/256 (34.38%), Postives = 133/256 (51.95%), Query Frame = 1

Query:  181 PSEWHIG--YPECGGDRQSPINLSAAIEESVKASEYDLRFFPT--------SCSSDELHFEVKDHFYKVDYSSCSEA--PSLVFEGV----NYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLN------LGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYVS 882
            P++WH    Y  C G RQSPI++  +    +  S  D  + P         SC   +L    K H  ++ Y  C ++  P L + G     +Y L Q+H+H+ SEH +      AE+HLVH+ E   T++LVL VL+D AE  +  ++ + W+++N       GES   D    S PY +LP +  Y  Y GSLT PPCTE V +++  +   ++D QLQ +R   ++     +D+ G+  RP QPLNGR+V   S
Sbjct:  101 PADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSS-DNEYLPAFSWQLQSGSCPFSQLVPSTK-HALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESA-IDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSVATCS 353

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: A0A429Y1Y9_9BACI (Carbonic anhydrase family protein n=1 Tax=Siminovitchia acidinfaciens TaxID=2321395 RepID=A0A429Y1Y9_9BACI)

HSP 1 Score: 132 bits (331), Expect = 1.150e-30
Identity = 96/263 (36.50%), Postives = 136/263 (51.71%), Query Frame = 1

Query:  118 ATEDGAEYTYRTTTDQ---VEPYGPSEW---HIGYPEC-GGDRQSPINLSAAIEES--VKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDM---LPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTV 870
            A E GA  +  T T +    E  GP  W      Y  C  G+ QSPIN+  ++EE+   K    + ++ PT        F + +  + V  +  + + S+V EG+ Y L Q H H+ SEH+      D E+HLVH  + +  EL VLG+LI + +   NEQ+  +WS L   E+  +D   E  P D+   LPS  T  +Y GSLTTPPCTE VKW+VF +PI MS  Q+Q ++     + H       N  RP QP+NGR +
Sbjct:   39 ANEKGATESNVTPTAEWSYEEETGPEHWGELDSAYAACMKGNEQSPINIEPSLEETSETKLENIEFQYEPTQ-------FSIVNTGHTVQANPATSSNSIVVEGIEYKLAQFHFHTPSEHQFNGQQMDMELHLVH--QDANGELAVLGLLIQAGK--KNEQLASIWSRLPKSETK-SDIAIEE-PVDLQALLPSNQTSFYYNGSLTTPPCTEKVKWIVFEEPIEMSKEQIQAFQQ----IFH-------NNQRPVQPVNGREI 277

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.540e-30
Identity = 89/256 (34.77%), Postives = 134/256 (52.34%), Query Frame = 1

Query:  181 PSEWHIG--YPECGGDRQSPINLSAAIEESVKASEYDLRFFPT--------SCSSDELHFEVKDHFYKVDYSSCSEA--PSLVFEGV----NYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLN------LGESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYVS 882
            P++WH    Y  C G RQSPI++  +  E   +S  D  + P         SC   +L    K H  ++ Y  C ++  P L + G     +Y L Q+H+H+ SEH +      AE+HLVH+ E   T++LVL VL+D AE  +  ++ + W+++N       GES   D    S PY +LP +  Y  Y GSLT PPCTE V +++  +   ++D QLQ +R   ++     +D+ G+  RP QPLNGR+V   S
Sbjct:  405 PADWHKNEEYAACAGPRQSPIDIVTSTLEDRCSS--DNEYLPAFSWQLQSGSCPFSQLVPSTK-HALELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESA-IDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSVATCS 656

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BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Match: UPI0004254187 (Carbonic anhydrase n=2 Tax=Bacillales TaxID=1385 RepID=UPI0004254187)

HSP 1 Score: 128 bits (321), Expect = 2.500e-29
Identity = 88/242 (36.36%), Postives = 129/242 (53.31%), Query Frame = 1

Query:  169 EPYGPSEW---HIGYPEC-GGDRQSPINLS-AAIEESVKASEYDLRFFPTSCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHRIGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNLGESMPTDHVFESSPYDM---LPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPILMSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTV 870
            E  GP  W   +  Y  C  G  QSPIN+  + ++ S K    ++++ PT        F + ++ + V  ++ + + S++ EG  YNL Q H H+ SEH+      D E+HLVH  + +  EL VLGV+I   +  +NE++  +WSVL  GE+     + E  P D+   LPS  T+ +Y GSLTTPPCTE VKW++F  PI MS  Q+Q ++           D H    RP QPLN R +
Sbjct:   62 EETGPEHWGELNPTYSACINGSEQSPINIEFSQLKTSKKIENIEIQYQPTP-------FSIVNNGHTVQANAATPSNSIIVEGKEYNLAQFHFHTPSEHQFNGQLLDMELHLVH--QDANGELAVLGVMIQEGK--ENEKLASIWSVLPNGETKKDISIKE--PIDLQALLPSDQTFFYYNGSLTTPPCTEEVKWIIFENPIEMSKEQIQAFQQIFP-------DNH----RPVQPLNEREI 279

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5503.12972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
F6MHT6_SACJA	1.850e-91	49.65	Carbonic anhydrase n=1 Tax=Saccharina japonica Tax...	[more]
D8LB10_ECTSI	5.710e-74	45.19	Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R...	[more]
A0A872YNN4_SACJA	1.120e-73	47.62	Carbonic anhydrase n=1 Tax=Saccharina japonica Tax...	[more]
Q9SMD6_9PHAE	1.050e-44	52.45	Carbonic anhydrase alpha type (Fragment) n=1 Tax=L...	[more]
H6WB77_VAULI	1.280e-33	34.50	Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID...	[more]
H6WB76_VAULI	2.510e-33	32.86	Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID...	[more]
A0A836C9F5_9STRA	7.370e-32	34.38	Alpha carbonic anhydrase n=1 Tax=Tribonema minus T...	[more]
A0A429Y1Y9_9BACI	1.150e-30	36.50	Carbonic anhydrase family protein n=1 Tax=Siminovi...	[more]
A0A835YV18_9STRA	2.540e-30	34.77	Alpha carbonic anhydrase n=1 Tax=Tribonema minus T...	[more]
UPI0004254187	2.500e-29	36.36	Carbonic anhydrase n=2 Tax=Bacillales TaxID=1385 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5503	contig	H-paniculata_contig5503:5922..13812 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	254.2
Seed ortholog evalue	7.4e-65
Seed eggNOG ortholog	2880.D8LB10
KEGG rclass	RC02807
KEGG ko	ko:K01672,ko:K01674,ko:K04413
KEGG Reaction	R00132,R10092
KEGG Pathway	ko00910,map00910
Hectar predicted targeting category	signal peptide
GOs	GO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.	carbonate dehydratase activity
EggNOG OGs	COG3338@1,KOG0382@2759
EC	2.7.11.1,4.2.1.1
COG Functional cat.	P
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01001
Exons	10
Model size	2052
Cds size	885
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5503.12972.1	prot_H-paniculata_contig5503.12972.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5503 7086..13809 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930574.6634665-UTR-H-paniculata_contig5503:5921..7085	1622930574.6634665-UTR-H-paniculata_contig5503:5921..7085	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5503 5922..7085 -
1691481354.8926315-UTR-H-paniculata_contig5503:5921..7085	1691481354.8926315-UTR-H-paniculata_contig5503:5921..7085	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5503 5922..7085 -
1622930574.8743591-UTR-H-paniculata_contig5503:13809..13812	1622930574.8743591-UTR-H-paniculata_contig5503:13809..13812	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5503 13810..13812 -
1691481354.9944248-UTR-H-paniculata_contig5503:13809..13812	1691481354.9944248-UTR-H-paniculata_contig5503:13809..13812	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig5503 13810..13812 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5503:5922..13812-
coding sequence from alignment at H-paniculata_contig5503:5922..13812-

protein sequence of mRNA_H-paniculata_contig5503.12972.1

>prot_H-paniculata_contig5503.12972.1 ID=prot_H-paniculata_contig5503.12972.1|Name=mRNA_H-paniculata_contig5503.12972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=295bp
MSPASSNKIIYGALGLILSVGVAHGALDLGNLPSLPILATEDGAEYTYRT
TTDQVEPYGPSEWHIGYPECGGDRQSPINLSAAIEESVKASEYDLRFFPT
SCSSDELHFEVKDHFYKVDYSSCSEAPSLVFEGVNYNLLQLHVHSVSEHR
IGSTHHDAEVHLVHLQEGSETELLVLGVLIDSAEYGDNEQIEELWSVLNL
GESMPTDHVFESSPYDMLPSTPTYAHYIGSLTTPPCTEGVKWLVFTQPIL
MSDLQLQQYRYHVSLVDHTKVDEHGNTNRPDQPLNGRTVKYVSK*

mRNA from alignment at H-paniculata_contig5503:5922..13812-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5503.12972.1 ID=mRNA_H-paniculata_contig5503.12972.1|Name=mRNA_H-paniculata_contig5503.12972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7891bp|location=Sequence derived from alignment at H-paniculata_contig5503:5922..13812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCATGTCTCCTGCGTCTAGCAACAAGATCATCTATGGAGCGCTGGGCCT
TATCCTGAGCGTTGGGGTGGCGCACGGTGCCCTGGTGAGCGTTCCAGGCA
TCTATCTACGCGTAACTAAATTGTAGAAAAAACAGATAATACACTAGACT
GGATCCTGTGATCGGTTCATTGATGTTTAAGGACAAGTTGGAAATGACGC
AGATGAACCGTGTCCGCGGGCAGTGGCTGTTCTCCCAATCCGTTAACTAC
GCAAACCCATATAATTCAAAATAGCGCACATCATTAAGCAACCTCCTCGC
TCCCCGCCCGTCCTGCCCTCGACCCTCTGCCCCGTCGCGCGCGCGTGCCT
CCTGCAACACTTTGGCCTTTGGACCGACTGTATCCATTCTCGGATATTTC
TCATCAAACGGTTTGCTCCACTTCCTTGGCACTTCACCTCCGATCGTCCG
TGGATACCTTCACCCACCTCACCGAAAGCAGGACCTGGGCAATCTCCCAT
CTCTCCCAATCCTTGCCACAGAAGGTGCGTGCCTGGTCCTCCTGGTGGTG
AGTGCCTGTACGCCCGTTGCACGTTTTGGTCGGATCTTATCAGAACAAGG
GGACATGATAAAAAGGTGCACGGGCACTGTTCCTCGTGTTGGATCCTCGT
CTTCTGGAATAATAGCCAAACCTAATTATTTCGGAAGCATATCGAATTGA
AACCTATCCTGTTTCTATGATGATAAATAAGCTGGCCTCTGCAAGTACGG
TCTACTAGTAGTCCTCACCTAAAACTGGAAAACAGTGGGAAACCACGCAC
CTGCGTCATGAGTACAGGGATAAGGGGCCGCCGCCGTTCAGACAGTCCAT
ACAGTAACAGCAATACATAATGAGGGACATGCAGGGGCTTGACATGGTTT
TGCGCATAGTGATTACAGCGCGAGGCAGCGTCCGACACATGAATTTAGAG
CCAGTTTTGTTTTTAGTTTCTAAACAGTCAACGTCTCACATCTGGGATCT
TCGTTGATTTGATTTAAAAGAAAATACAGAGTTGGTTTGGACATAGACGG
ATCCCTCGCCCCCTCGTAGCCATCGAAGGTCGCGAAAAAGAACTGTGGTG
GATCTGGACACTCTGAGCTGTTGGCTACGTGGCCAATAAGGTTGTGGTTT
CTTGTCGTGGAATGGCAACAAGTAGTTCCCCACGAGGTAGTACTGCAATT
AACCATTTGGGTGCTGGAGGCTGTTCCAGGACAGAAAGAAACGTGGAGCT
GATTAGAAATGCCGAGAGCTGCAGTCGACGAGGGGTGAAGATCACGCCCA
CTCTGGGTAAATCTATCCTGGTGTATGTGATGTATGGACTGTCCGTCGTA
CTGGATACTGGGTTACTGCCTTAATAGCAGCGACTCGAGGGCCCCGTAGT
GATAATTGTGTCCTAAATATTCTTGCATCGAAGTTGTTTCTCCCTTTGAT
AACTTTCTGCGGGTATTTTTCCTCTTCGTTTTCGCCGAGATTTCTGGCGC
TGTCAGCGTCTTTCTCAGTCCTGAGAAAAATCGGCTGAAGAACATTCGGC
ATATCTAGCGCGAAGGCGAGTGACACATCTCTATTGGACAGTTTGTCTAA
TTCAATAAGTAAGTATTATGTACCAAAACATGCCAACCATAAAGCACGCC
TGCCTTAAGCCTCAGCGGTTAATGTGTTACCCGCCTATCATCGAATCTGG
ACCTTTTATCCCCCGCCCTAAGAGACACCCACACGTCTCGCGCTAAATGT
ATGATGTATGATGTGTGCTAGGCAGAGATCGCTTTACCAATGCGAGTCGA
AGAATATATAAAAAAGTGCAGTTTAACCCACCTTTGACTCGTTTTCAGTG
ATTCGTGTGTAGGCCAAAGCTGTCTGACTCCAACATTAACCCGAGCTCTT
ATACTTAGCGTTCCCCGATATCCAATCTGGCAGCGATAGCGTCTAAACCG
ATGATTAGGTGGCACCGCTCCGCGACGTAGCTGAAACGATCGAAGCAGTG
GAGGGTTCGGACAGGTACATCACGATCAACCAACTGAAACGCCCAAAAGT
CCACTCATGGACAAACTATGGTAAAGTCTACCCACTGAATATCGGTGCCG
AGCCAAGCAAAATTCCGTCGTCCCTAAGACTCCTGAGGTCTTTCACGGCA
CGCTCCCGTACTTTGGACGGTTCTTTACACTGATTTCGAGATGTTGCCAA
ACTTCCACCTTTCTTCATATCCCCCCACAAACCACAAACTTGCTGCTAGG
AAAGACCTTGCAAAAACGAAACTCGCTATATTGGGATGCGTGACTGGAAG
ACTGACCGAACGCCCGTTTCGTCTCCGCCGCTCGATCCACCGCTGCACCG
ACCGTACGTAGATGGAGCTGAATACACCTACCGTACCACGACCGACCAGG
TGGAGCCATACGGTCCCAGGTATGGACGCTTGCACTGACAAACATCCAAC
ACCAAGGCTGTGTAGATGTGTAGGAACATATAGTTTTCGCCCTTTCTGCA
ATACGGCGCAGTGGGTGGTGGTTTTGAGCGCGATCCCGATACTGTATTTG
CGGGAACGTAAATATTCTGGCGCGTGTTCGATGCTCGGAAATCGGAGTAG
ATGTGGCACAGCGCCCCCCTCCCTACATCTGGGCGTAGGTGTTTCGGTGC
AGTGTATAAGTCTCCCTCTCTCCTCTCTCGTGCACTTTTCCTCAATTCCG
TCTTTTCAAGGACATCTTGGGCTTATACTGTCACCAAAAGATGCCTTATG
ATCGATTCTCGATCCATCGTCCAGCGTCGCCTTTTCATTGTGATGTTTGT
CGCCCTGTTTTTAGCGATATCGTTTGTTGTTTGTTTCGGGGATTTTCCGT
CGTCTCGTTGCACATTATGTTTATTTTGCTTCCAGCGAGTGGCACATCGG
GTACCCGGAATGCGGCGGTGACCGACAGAGCCCCATTAACCTATCTGCTG
CGATCGAGGAGTCCGTGAAGGTAAGCCACACTACTATTAATAGTGGCCAT
TTGTGGAAGACATGACCACAACGAAAATACAACACATGAGGTAATCCCAC
TGTAGACATATGAGAAAATAATTGAATATTTACACCAGTCGTCGAGTTAA
TCTCTGTCAAGAAATCACGATACATCTAAGCTAACCTACAGGTGGTGTGT
CAAGTGTCGTCGCATCGATTCCACGGGTGGCTAAATTCAACACTCGCATT
GGCCTTTCGACAAGGCGTAGACTCGGATAGAATGATGGCGATCTGGAAAG
CGTCAAGAATCAACGTATACGAAGAAGCAACGATCATTCACTCTTCTCAC
TCGCCCATCCTCGATTGTCGTATCTGTTCTGCGTACACGACCAAGGGTCC
TACCCTGTGAGATTTTTTCTGCTGGAGCTGCGTAGCGTCCGCCGTTCGTC
GCGGTATGCCTCGGATCTGATGTGTTATTCAAGCCCCCTCCTCACCCCCC
CGTATTACCGCCACGTTTCTCGTGTCGTGCATCCCGGCTTGCGGATCGTG
GGTGCCGGTGTATTTACTGTCCACTGCTTGGAATCCATCATGGAAAACGT
CCACAGGCTTCAGAGTACGATCTAAGGTTCTTCCCTACGTCGTGTTCTTC
AGATGAGCTACACTTCGAAGTCAAGGACCACTTCTATAAGGTACAAAATC
CATATCTTTAGTCGTTACAGTATTACGTTACAGCGATGGTCGTCGATTCT
ACCAGTGATCACTCGAGATGAACGTAACTAGCCACTCAATCGTGCCAACT
CTATTGGAGAAATGAACAGCACCGCCGAGTCCGAAGACTACTAGTAAATC
ATGAGACCTTCAATTTATCGTGTCAGTATTAGTAAGAGCAGTTTTACAGG
TCTCTCACTGGTAGTACACACATACACACCGTTCTCCATCACCGACACGT
CGTTATGTATCCTCGCGCAATGTAACGTAGCGCTTGTTCTCCTCTCCTGC
TTCGCCCGTCCCCCCTTCTGCTGTGTACCCGCGTTCCCGGTATTTGGGAA
TGGTGCGTTTCGGTACCAACAGGTGGACTACTCCTCGTGTAGCGAGGCGC
CTTCTCTTGTTTTCGAAGGTGTCAACTACAACCTACTCCAACTGCACGTA
CACTCCGTCTCGGAGCACAGGGTGAGCTGCAAGCCGGCTTGGCCCGCAGG
AAATATCACGGCCGCCTTATCGTTCTTCCTCAAAAGGAAATACCGCGTGA
CAAAGCCAACACAAAACGTCGTTCCAGAACAATGCTTCCTACTTTGTTGT
ATTGAACTCAATACGGCGGGTGCACACGCGACTAATGCGTTGATCTTTCA
TGTCCCGAGCACGTCCGGAAATGTTGAAGTATCGCTACTACGGTAGACAC
AACCCCCTGAAACAAAGCACACGTGGGACTCGGTCATGGGCTGTGTTATT
GTATTCCGTTCCAATTCGGTTCTGAACTACTCGATCCCGCCGGTTCGCAA
TTTGGGGAAAACGACGAACAGATTGGCTCCACCCATCACGACGCTGAGGT
GCACCTGGTGCACCTACAAGAAGGCTCTGAAACCGAACTCCTGGTGTTGG
GCGTGCTCATCGACTCTGCCGAATACGGAGACAACGAGCAGGTACAGTAC
CGTACTGTATTGTAGTGGTTATATTTGTTCATTGAATCACCGACCAAATA
TTCTAGTAGACGACCGCGAGTTTCTGGTGCGCTTGCAATGTTGCACGTTT
CATAGGTTGGAGCCTTTCCTGTGCTGTACTCAAGAGTCTGCATGTGTGTG
TTTGTATACCACGTATGGCGATGTGACTAAGTTCCACCAATATTTATCAA
GCTAGCTAGACCGTGATACATGACTTTATCAGACTTGTCAAGCGAGGTGT
ACACCCGCTTCTGAGCGCTGTTGATGAAAACGGGCACACGTCGCGATCGA
TGCTCTCCAACATAAGGTACAAGATATCAGGTCGACAAGGTATAATTACT
GGACTGCGAACAGAAAATGATTTCAGAACTTGTAAAGGCAATGTCGATCG
ATCAACGAATGGATTGGAGTCATCCGACGGTAAGGGCGGGGGGGATTTTG
AACCGCTTTGTTTAACGATGGAGTCGCTTCGAGAACGGGACTAGGCTTTT
TTCTCTTTTTCATTTGTTGCCCCCCCTTGAAATATATGCCGTTTTAACTC
GTGGATTGTACACCTTTCCTACACCACAAACACATGCGATTGACATAGTT
TTGATTCGCGTTATTTTTGCACCGCTTTTGCGAAGCGACCTTCGCTAAAC
AATTGACCCGGCCCCTACCATAAGATGATTCATTGTTTTCTGTTTTTTGC
TGGTACCCGACAAATCAGCTTCCCGTTACCTCGGCATAATAGGAGAGGAA
TCATTGGCCACATGCGACCGCGCTCATGGGAGCAATGATCTAACAGCTGA
GCCATGCGCCTCTCGCATAGCTTCTTTTTTCGCTGATAGGAATACACGCA
ATATTTAGTGCCCGCCCGCACACCGCGCGCTGCGTGTGCTGTTTCGTGCA
CCCCACCACGAGAACAGATCGAAGAACTGTGGAGCGTCCTCAACCTCGGC
GAATCGATGCCCACAGACCACGTCTTCGAATCGAGCCCGTACGATATGCT
CCCCTCGACGCCGACCTACGCTCACTACATCGGCTCCCTGACCACACCCC
CGTGCACTGAGGTTAGAGCTCGAGAAATAGAAGCGATGCTTGTTGTGTAT
CGCCGAGAAGCACCTGTAACAAACACAAAACCGTGTTCGCTCATATGTTT
CATCCCCGCTTCGGTACACCCACGAAATACTTCGGGGGCGAGGGGCGCGG
GCGAACGATGGAGAGGACTGAGCATGGAGTGTACATAACTCAATTACCCA
TCATTCGGCGGTGTATATTGTGTGGTTTGTAAACCGTAAATCTATCCATG
TCTCCAACCGTTTCTCGCTGGCCAAGTAGCGCTTATGAATACTGGGTAAG
GAATTGTAATAGTGGTGTTCGAGAGTGTTTCCGGCGTGCGGCAAGACGAC
TAGGGTTCGGGTTACAAGCGTTTAAGGCCAAAGGGCGCCTTTGCAAAAGC
TGCACATCGTGCCGTACATGTTTCGACCGTGAAGATTACTATTTTTCGTA
TTAATATTTTCTGTTTCTGTTTCTGGTTGTCGTTTTCCCGCAGGGCGTGA
AGTGGCTCGTATTCACTCAGCCCATCTTGATGAGCGATCTGCAGCTTCAG
CAATACCGCTACCACGTCTCGCTCGTAGACCACACCAAGGTATAGTATAG
GCTGTGCATGCGAAACAAGAGTCTATTTAGTATGTAGAATACATACAGGA
AATATCACCTTCCGGCAATGTGCTAACTCGGATATCGCGATGCGGAGTCA
CCTAGAACAGCACACATAGAGCACCCATTTTGATAACCGCTGAACTGAAA
AGAGTCGTTTTCTCCACGGGGCCCTGGTATCTCGCGCGGGGTGATGTGGT
ATCCTTTCAGCGGGCGGGCGGAGGACGGAGTTTTGAAAAGAACCATCAAA
GGAGGAGTAAGGTGTAAGGCGAGCCGTCTTACTTTCAATATTTCAATAGC
TTAAAACTCAATTCTAAACGGTATACCCAGATAACGCCTAACCGCTCTCC
CTCCCCCCTCCCCCGGTTGTTTCATCGATGCCCGTCGCGTATGGCGTGAT
AGGTCGATGAGCACGGCAACACCAACCGCCCCGACCAGCCGCTCAACGGC
CGCACCGTAAAGTACGTGTCCAAGTAATTCTATGTGCTCATGCGACGTTT
GGCGAACATCTGCTAAGGTGGCAACAGCTGGCCGCGGTTAATTTTCGATT
GACTCGCGAGGCCTCGCTACTGTTGTTCAGGATGCGGCGGATAATGTAGT
ATCGCGGAAAATAAACACTAGATTAATGTTTTCTAATCGTTATAGACAAT
GACGGCAGATGATAGTCTTGGGTTATTTTGCCGAGTACATCGAGAGTGGG
CAGTCATTTTCATCGGGGTATCATGCTTGTAGCACGTGTTCAGTTTGTCT
TGAGCTATCAACTTATGTGCCGTGCTGTGTTCTTGTGGTGTATATATGCT
GTTATGTGTGTTCATGCAGTGAAACGAGAACTAGAAAAGAGGTTGCACAT
TTTTCTCTGACGCCCTACGAGGCTGATTGATATTGTCGTGCTTGGAGTGA
GGCTCAAGACTTTATTTTGGCGAGAATCACGAGCACTACTCTCACTTTAT
CAGAGGAGTTCCTTTCAGGCTATAATCCGAGACTCCTCTCTAAACCTGGA
TTTCGTATGGATTAACAAAACGTGGGGCTCAAATTCTTGTTGGAGAATTT
CTTGTCAGCGGGCCCGTAGTGTATGTGGCTGTTCGACGTTGGCGTGTTTG
GGCGTGATCTAGCATCAGTAGAAGAATCTACTAATTATGTTACTGTTGTC
TTTGGTGCGTGTAATAGAATGGCATAGATTCCGAGTACTAGTAGGGTGTG
CTAATAGCTGTTGGGTCTAGTCACGTGTTGCCTTGTCCCTCGTGGGCCAT
AATACTATTGGAAATAACGTGTCAATTGTGTGTGTTGTATTGCTAAGGTA
GCGAGTGCTGTGACGCCATCAATAACAACTCAGGCAAACGAGCACATGGT
GTTAGAACTATCGACTAGTGAAAACTGACATGTGTGCTAGGAAAGTACTA
GCTAGCCTGGAAGCGTACATTGTCAATGTGCAGTACGTGCGGGGGTTCTT
CGTTCTCTCCATAGGATACGGTTGTAACCGTTCTCGACTCTAAGCTCTTT
TCTCAAAATCACACTGAATGCGTGTACTTGCATTGGATATCGAGTGGTAT
ATATTGTACAAGAGAAGTTCCAGGTTTGGAGAGTCTATGAAGATAAAACA
AGTCACAAGTTGGTATCGTCGAGGGTGTTGCTGGGATGGGT

Coding sequence (CDS) from alignment at H-paniculata_contig5503:5922..13812-

>mRNA_H-paniculata_contig5503.12972.1 ID=mRNA_H-paniculata_contig5503.12972.1|Name=mRNA_H-paniculata_contig5503.12972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1770bp|location=Sequence derived from alignment at H-paniculata_contig5503:5922..13812- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCCTGCGTCTAGCAACAAGATCATCTATGGAGCGCTGGGCCTTAT
CCTGAGCGTTGGGGTGGCGCACGGTGCCCTGATGTCTCCTGCGTCTAGCA
ACAAGATCATCTATGGAGCGCTGGGCCTTATCCTGAGCGTTGGGGTGGCG
CACGGTGCCCTGGACCTGGGCAATCTCCCATCTCTCCCAATCCTTGCCAC
AGAAGGACCTGGGCAATCTCCCATCTCTCCCAATCCTTGCCACAGAAGAT
GGAGCTGAATACACCTACCGTACCACGACCGACCAGGTGGAGCCATACGG
TCCCAGATGGAGCTGAATACACCTACCGTACCACGACCGACCAGGTGGAG
CCATACGGTCCCAGCGAGTGGCACATCGGGTACCCGGAATGCGGCGGTGA
CCGACAGAGCCCCATTAACCTATCTGCTGCGATCGAGGAGTCCGTGAAGC
GAGTGGCACATCGGGTACCCGGAATGCGGCGGTGACCGACAGAGCCCCAT
TAACCTATCTGCTGCGATCGAGGAGTCCGTGAAGGCTTCAGAGTACGATC
TAAGGTTCTTCCCTACGTCGTGTTCTTCAGATGAGCTACACTTCGAAGTC
AAGGACCACTTCTATAAGGCTTCAGAGTACGATCTAAGGTTCTTCCCTAC
GTCGTGTTCTTCAGATGAGCTACACTTCGAAGTCAAGGACCACTTCTATA
AGGTGGACTACTCCTCGTGTAGCGAGGCGCCTTCTCTTGTTTTCGAAGGT
GTCAACTACAACCTACTCCAACTGCACGTACACTCCGTCTCGGAGCACAG
GGTGGACTACTCCTCGTGTAGCGAGGCGCCTTCTCTTGTTTTCGAAGGTG
TCAACTACAACCTACTCCAACTGCACGTACACTCCGTCTCGGAGCACAGG
ATTGGCTCCACCCATCACGACGCTGAGGTGCACCTGGTGCACCTACAAGA
AGGCTCTGAAACCGAACTCCTGGTGTTGGGCGTGCTCATCGACTCTGCCG
AATACGGAGACAACGAGCAGATTGGCTCCACCCATCACGACGCTGAGGTG
CACCTGGTGCACCTACAAGAAGGCTCTGAAACCGAACTCCTGGTGTTGGG
CGTGCTCATCGACTCTGCCGAATACGGAGACAACGAGCAGATCGAAGAAC
TGTGGAGCGTCCTCAACCTCGGCGAATCGATGCCCACAGACCACGTCTTC
GAATCGAGCCCGTACGATATGCTCCCCTCGACGCCGACCTACGCTCACTA
CATCGGCTCCCTGACCACACCCCCGTGCACTGAGATCGAAGAACTGTGGA
GCGTCCTCAACCTCGGCGAATCGATGCCCACAGACCACGTCTTCGAATCG
AGCCCGTACGATATGCTCCCCTCGACGCCGACCTACGCTCACTACATCGG
CTCCCTGACCACACCCCCGTGCACTGAGGGCGTGAAGTGGCTCGTATTCA
CTCAGCCCATCTTGATGAGCGATCTGCAGCTTCAGCAATACCGCTACCAC
GTCTCGCTCGTAGACCACACCAAGGGCGTGAAGTGGCTCGTATTCACTCA
GCCCATCTTGATGAGCGATCTGCAGCTTCAGCAATACCGCTACCACGTCT
CGCTCGTAGACCACACCAAGGTCGATGAGCACGGCAACACCAACCGCCCC
GACCAGCCGCTCAACGGCCGCACCGTAAAGTACGTGTCCAAGTAAGTCGA
TGAGCACGGCAACACCAACCGCCCCGACCAGCCGCTCAACGGCCGCACCG
TAAAGTACGTGTCCAAGTAA