mRNA_H-paniculata_contig55024.12971.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: UPI001FA2307D (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA2307D) HSP 1 Score: 59.7 bits (143), Expect = 3.880e-8 Identity = 32/107 (29.91%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 4 EEVWVADSGATAHMTPSNELMFDYETCSNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAIALPNGSDLL 324
+ VW+ DSGA+AHMT E + C+ + + N +++ + G GK+L+ G+ L V +VP+L FS +++ + + K+ GA I G+DL+
Sbjct: 272 DNVWILDSGASAHMTYRKEFFVELLECNQKSLTLGNKQSVEVAGIGKVLIKRCVNGQWENSELHDVLYVPNLRRNLFSEGVIMRKSYIIIKKDSGAFIY--KGNDLV 376
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE) HSP 1 Score: 55.5 bits (132), Expect = 1.880e-7 Identity = 33/100 (33.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 4 EEVWVADSGATAHMTPSNELMFDYETCSN-LFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAIA 300
+++W+ADSGA+ HMTP E YE+ S+ V + N ET+ G G + V M G+ LS V VP++ FS+ V++G + + G ++
Sbjct: 9 KDMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKGYDFKVDKNGCYLS 108
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 8.750e-7 Identity = 32/100 (32.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETCS-NLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAI 297
R W+ DSGATAHMTP +F+YE N+ V +A+G+ + + G G + + D I + V H+P LD S+ + +G++V ++ I
Sbjct: 259 RSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.640e-6 Identity = 32/91 (35.16%), Postives = 49/91 (53.85%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETC-SNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTV 270
R W+ DSGATAHMTP E +FDY+ +++ V +A+G+ + + G G + + D I V H+P LD S+ + +GL V
Sbjct: 156 RSSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 2.110e-6 Identity = 30/100 (30.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETCS-NLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAI 297
R W+ DSGATAHMTP + +F+Y S +++V +A+G+ + + G G + + D I + V ++P LD S+ + +G++V + I
Sbjct: 241 RSAEWLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVI 337
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.670e-6 Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETC-SNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAI 297
R W+ DSGATAHMTP +F+Y+ SN+ V +A+G+ + + G G + + D I V ++P LD S++ + +G++V +++ I
Sbjct: 262 RSAGWLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.710e-6 Identity = 29/101 (28.71%), Postives = 54/101 (53.47%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETC-SNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAIA 300
R W+ DSGAT HMTP + +++Y T ++++V +A+G+ + + G G + + D I + V HVP D S+ + ++G++V + I+
Sbjct: 165 RSAGWLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSVEFQRNSCVIS 262
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 6.030e-6 Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 13 WVADSGATAHMTPSNELMFDYE-TCSNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLT 267
W+ DSGAT+HMTP E +FD E T S++ V +A+G+ L + G G + + + I + V ++P LD S+ + +GLT
Sbjct: 155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 8.200e-6 Identity = 31/100 (31.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query: 1 REEVWVADSGATAHMTPSNELMFDYETC-SNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPDLDTIFFSLQIVVNQGLTVCLKEEGAAI 297
R W+ DSGATAHMTP +F+Y+ SN+ V +A+G+ + + G G + + D I V ++P LD S+ + +G++V +++ I
Sbjct: 238 RSAGWLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Match: A0A151T8P9_CAJCA (Uncharacterized protein n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T8P9_CAJCA) HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5 Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 10 VWVADSGATAHMTPSNELMFDYETC-SNLFVVVANGETLPIEGYGKMLVWMKDRGEIHKF-SLSRVAHVPDLDTIFFSLQIVVN 255
+WV DSGAT HMTPS++ Y C SN + A+G + + G G + I+ F +L V HVP L T S+Q + N
Sbjct: 17 LWVLDSGATDHMTPSSKFFSTYFPCPSNKKIATADGTLITVAGIGNI--------HINPFITLKNVLHVPKLYTNLISVQKLTN 92 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55024.12971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig55024.12971.1 >prot_H-paniculata_contig55024.12971.1 ID=prot_H-paniculata_contig55024.12971.1|Name=mRNA_H-paniculata_contig55024.12971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp REEVWVADSGATAHMTPSNELMFDYETCSNLFVVVANGETLPIEGYGKMLback to top mRNA from alignment at H-paniculata_contig55024:586..909+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig55024.12971.1 ID=mRNA_H-paniculata_contig55024.12971.1|Name=mRNA_H-paniculata_contig55024.12971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig55024:586..909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig55024:586..909+ >mRNA_H-paniculata_contig55024.12971.1 ID=mRNA_H-paniculata_contig55024.12971.1|Name=mRNA_H-paniculata_contig55024.12971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig55024:586..909+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |