mRNA_H-paniculata_contig55.12962.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55.12962.1
Unique NamemRNA_H-paniculata_contig55.12962.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Match: D7FIE2_ECTSI (Abhydrolase domain-containing protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIE2_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 2.160e-86
Identity = 180/398 (45.23%), Postives = 229/398 (57.54%), Query Frame = 1 
Query:    1 RPETWDHVALSDARDSVRHVRATIGHDVPLMGVGFSFGGFLLTALAGSVPREEHGFCGIVTISGLFDMSSMMDHIAAQYIHSYASANTRVTVRNYQKFKVLETLTSAGDVATADFINPSGTCSRAPECPGASENAAAGACGAAATSNDXXXXXXXX----------STASAVGV----------------------------------------------GVTPVCRSVAKPV---EGSNVVSLASPVAARKNCCSSVPGSPGRVGGGGGPGVVEVKAKDLAKMTHPIAFHEGLTLPFTGDSSVEAYYERIEEIMSPYIEAVDVPALALLARDDPLCPPMAWEGALKRAAKSNGIIVAITDKGGHCGWFDGLGAGSWVDRAAGDFLANALELRRDELA 1017
            RPETWDH ALSD RD+++H+R T+G  VP++GVGFSFGG +LTA+AG+ P+EEHG CG+V+ISGLFDM +MM HIA QY + Y  ANT+VTV+NY+KFKVLETLT+  DV+     + SG    +  C    E    G   ++AT+ +                  S ASA                                                 G T    + A+ V    G  V   AS + +       V G P   G G G     V AK++A M  P AFHE LTLPFTGDSSV+AY++RI  +M   + +V VP L LLA+DDPLCPP AW GAL+ AAKS+GI+VAIT+ GGHCGWFDGLGAGSW+DRA G+FL++ALEL ++  A
Sbjct:  235 RPETWDHAALSDCRDAIKHLRRTVGEHVPVLGVGFSFGGCVLTAIAGTAPQEEHGLCGLVSISGLFDMPAMMKHIAEQYAYPYGFANTKVTVKNYRKFKVLETLTAEADVSVPGGRS-SGPIRNSSFCSSDDEGMGVGPSSSSATAEEPLRPSTGPMRTRKKLRPASAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDGETTQGTATAEAVASRRGDEVFHTASLLDSGHGKGREV-GMPAGAGPGAGATSGLVTAKEMAAMKDPSAFHEALTLPFTGDSSVDAYFQRIGRVMGQGVSSVTVPTLCLLAKDDPLCPPHAWVGALEAAAKSDGIVVAITEHGGHCGWFDGLGAGSWLDRATGNFLSSALELSKESTA 630
[Close]
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Match: A0A835YXD5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.040e-23
Identity = 54/102 (52.94%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:    1 RPETWDHVALSDARDSVRHVRATIGHDVPLMGVGFSFGGFLLTALAGSVPREEHGFCGIVTISGLFDMSSMMDHIAAQYIHSYASANTRVTVRNYQKFKVLE 306
            RPETWD  AL D  D + +VR TIG  VP+ GVGFSFGG LLT   G+VPR  H    +V++SGLFD  SM+ H+  Q+   Y + N +VTV NY++FKVL+
Sbjct:  268 RPETWDDTALQDLLDVIAYVRGTIGPGVPMFGVGFSFGGALLTTAVGTVPRAVHTLSAVVSVSGLFDFGSMLKHVETQWGWLYDAMNAKVTVANYKRFKVLD 369
[Close]
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Match: A0A6H5JJN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJN0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 8.840e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  817 RDDPLCPPMAWEGALKRAAKSNGIIVAITDKGGHCGWF---DGLGAGSWVDRAAGDFLANALELRRDELA 1017
            R   L P   W GAL+ AAKS+GI+VAIT  GGHCGWF   DGLGAGSW+DRA  +FL++A EL ++  A
Sbjct:   16 RPPALAPACLWVGALEAAAKSDGIVVAITKHGGHCGWFGWFDGLGAGSWLDRATKNFLSSASELSKEPKA 85
[Close]
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Match: A0A6P4YUZ3_BRABE (protein ABHD15-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YUZ3_BRABE)

HSP 1 Score: 60.5 bits (145), Expect = 1.310e-5
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:  637 GVVEVKAKDLAKMTHPIAFHEGLTLPFTGDSSVEAYYERIEEIMSPYIEAVDVPALALLARDDPLCPPMAWEGALKRAAKSNGIIVAITDKGGHCGWFDGLGAGSWVDRAAGDFLANALEL 999
            G   ++A+ +A+      F E +     G  ++E Y+E+ E      I+ V VP L + ++DDPL P  +    L          +A+T+KGGHCG+F+G    SW +R A +FL  A +L
Sbjct:  276 GTSALRAESMAE------FEEMVFCRTNGARTIEEYWEQNEPTRE--IDEVAVPLLCISSKDDPLVPHESIPTELFLTYPH--FFLALTEKGGHCGFFEGFQPDSWAERLAFEFLRAAQKL 386
[Close]
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Match: A0A6P4Y0K7_BRABE (protein ABHD15-like isoform X1 n=2 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y0K7_BRABE)

HSP 1 Score: 58.5 bits (140), Expect = 5.890e-5
Identity = 34/102 (33.33%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  691 FHEGLTLPFTGDSSVEAYYERIEEIMSPYIEAVDVPALALLARDDPLCPPMAWEGALKRAAKSNGIIVAITDKGGHCGWFDGLGAGSWVDRAAGDFLANALE 996
            FH+ + +   G SS + Y+   E +    ++ V  P L + ++DDPL P  +    L +        +A+T KGGHCG+F GL   SW +R A +FL  +L+
Sbjct:  331 FHQRVHVRLNGYSSWDLYWAENEPLRD--VDEVATPLLCVSSKDDPLVPEDSIPVELFQTYPH--FFLALTQKGGHCGFFQGLFPSSWSERLAVEFLKVSLD 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55.12962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIE2_ECTSI2.160e-8645.23Abhydrolase domain-containing protein, putative n=... [more]
A0A835YXD5_9STRA8.040e-2352.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JJN0_9PHAE8.840e-1658.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4YUZ3_BRABE1.310e-532.23protein ABHD15-like n=1 Tax=Branchiostoma belcheri... [more]
A0A6P4Y0K7_BRABE5.890e-533.33protein ABHD15-like isoform X1 n=2 Tax=Branchiosto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55contigH-paniculata_contig55:1217..6545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue1.9e-66
Seed eggNOG ortholog2880.D7FIE2
KEGG koko:K13696
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.poly(3-hydroxybutyrate) depolymerase activity
EggNOG OGsCOG0429@1,KOG1838@2759
Ec32 ortholog descriptionAlpha/beta hydrolase fold-1
Ec32 orthologEc-11_001570.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons5
Model size3818
Cds size969
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930572.3098059-UTR-H-paniculata_contig55:1216..13061622930572.3098059-UTR-H-paniculata_contig55:1216..1306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 1217..1306 +
1691481353.6754797-UTR-H-paniculata_contig55:1216..13061691481353.6754797-UTR-H-paniculata_contig55:1216..1306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 1217..1306 +
1622930572.3981624-UTR-H-paniculata_contig55:3773..40181622930572.3981624-UTR-H-paniculata_contig55:3773..4018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 3774..4018 +
1691481353.741089-UTR-H-paniculata_contig55:3773..40181691481353.741089-UTR-H-paniculata_contig55:3773..4018Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 3774..4018 +
1622930572.4163249-UTR-H-paniculata_contig55:4031..65451622930572.4163249-UTR-H-paniculata_contig55:4031..6545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 4032..6545 +
1691481353.7585213-UTR-H-paniculata_contig55:4031..65451691481353.7585213-UTR-H-paniculata_contig55:4031..6545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55 4032..6545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930572.3246968-CDS-H-paniculata_contig55:1306..13931622930572.3246968-CDS-H-paniculata_contig55:1306..1393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 1307..1393 +
1691481353.687599-CDS-H-paniculata_contig55:1306..13931691481353.687599-CDS-H-paniculata_contig55:1306..1393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 1307..1393 +
1622930572.3434684-CDS-H-paniculata_contig55:1899..25081622930572.3434684-CDS-H-paniculata_contig55:1899..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 1900..2508 +
1691481353.7007358-CDS-H-paniculata_contig55:1899..25081691481353.7007358-CDS-H-paniculata_contig55:1899..2508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 1900..2508 +
1622930572.36379-CDS-H-paniculata_contig55:3036..32131622930572.36379-CDS-H-paniculata_contig55:3036..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 3037..3213 +
1691481353.7134542-CDS-H-paniculata_contig55:3036..32131691481353.7134542-CDS-H-paniculata_contig55:3036..3213Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 3037..3213 +
1622930572.3831232-CDS-H-paniculata_contig55:3677..37731622930572.3831232-CDS-H-paniculata_contig55:3677..3773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 3678..3773 +
1691481353.7302935-CDS-H-paniculata_contig55:3677..37731691481353.7302935-CDS-H-paniculata_contig55:3677..3773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55 3678..3773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55.12962.1prot_H-paniculata_contig55.12962.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55 1307..3773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55.12962.1

>prot_H-paniculata_contig55.12962.1 ID=prot_H-paniculata_contig55.12962.1|Name=mRNA_H-paniculata_contig55.12962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=323bp
MGVGFSFGGFLLTALAGSVPREEHGFCGIVTISGLFDMSSMMDHIAAQYI
HSYASANTRVTVRNYQKFKVLETLTSAGDVATADFINPSGTCSRAPECPG
ASENAAAGACGAAATSNDAAAAVSTASTASAVGVGVTPVCRSVAKPVEGS
NVVSLASPVAARKNCCSSVPGSPGRVGGGGGPGVVEVKAKDLAKMTHPIA
FHEGLTLPFTGDSSVEAYYERIEEIMSPYIEAVDVPALALLARDDPLCPP
MAWEGALKRAAKSNGIIVAITDKGGHCGWFDGLGAGSWVDRAAGDFLANA
LELRRDELASSGANNSTTTTTS*
back to top

mRNA from alignment at H-paniculata_contig55:1217..6545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55.12962.1 ID=mRNA_H-paniculata_contig55.12962.1|Name=mRNA_H-paniculata_contig55.12962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5329bp|location=Sequence derived from alignment at H-paniculata_contig55:1217..6545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACCTGAGACATGGGATCACGTTGCTCTGTCCGACGCCCGAGATAGCGT
CCGACACGTGCGCGCGACGATAGGGCACGACGTGCCGCTGATGGGAGTGG
GTTTCAGCTTTGGGGGTTTCTTGCTCACGGCGCTCGCGGGCTCGGTACCG
CGGGAGGAACACGGCTTTTGCGGCATTGTGAGTGCCTGTAATACCACGGG
CGTGTACAGGAGAATTGCGGGGGGGGGGGATGGACTCGGGAATCGAGGCA
GAGTAAGCCAAATTAAAAGTAACTTAGTTAGGAAATCGTTCGGCCCAAGC
CAGTCAGCCATTAGCTGTGAAAGATGTTTCAAGTAGTTCGTCGGTGTTGA
CGGTTTTTCCTGTTGAAAGCGCTGACTGTTCCTTGGTGATGAGCTTTTTT
TCGTTTTACGGTTGTGTAACGTTTATTTTTCATCGTTTTCATCTTTTTGG
TTTATTTTATTTTGTTTTACAACCCTTATTTTCTTTCTTTTCCTTCCTCT
TTTCATCCGCACATGAATTTATATATATTTGCCTGTGTTTGTGTCTTCTA
TTTTTACTGACCAATTTTTCGTGGTTCGGTTCAACCGGTGTTCATCCATG
TGACCATGATCAATGCCGCCGTTTTTGAGTCATTTTTTTATCTTCTTAAT
TCTCTTCATACACCATTGCTTCTTCACACGCAGGTGACTATCTCGGGGCT
TTTCGACATGTCATCCATGATGGACCACATCGCGGCGCAATACATCCACT
CGTACGCCAGCGCCAACACCCGCGTCACCGTCCGCAACTACCAAAAGTTC
AAAGTCTTGGAAACCCTCACGTCTGCCGGAGACGTCGCTACTGCTGACTT
CATCAATCCATCAGGAACCTGCTCGCGCGCGCCGGAGTGCCCTGGAGCAT
CCGAGAACGCCGCCGCCGGTGCGTGTGGTGCAGCAGCAACCTCTAATGAC
GCTGCTGCCGCCGTCAGCACGGCATCTACTGCTTCTGCTGTTGGTGTTGG
TGTCACTCCCGTCTGCCGCTCCGTGGCCAAGCCAGTCGAAGGTTCCAATG
TTGTTAGTCTTGCAAGCCCCGTCGCCGCGCGTAAAAACTGTTGTTCTTCT
GTCCCTGGATCCCCTGGCCGAGTCGGAGGGGGTGGGGGACCGGGGGTAGT
GGAGGTTAAGGCGAAGGATTTGGCGAAGATGACGCACCCTATTGCGTTTC
ACGAGGGGCTGACGCTGCCGTTCACCGGGGATTCTAGCGTGGAGGCGTAC
TACGAGCGCATCGAGGAGATCATGAGCCCTTATATTGAAGCGGTATGTGT
TTGGTGTGTTGATGATTTTGTCTTTTTCGTGTTTAGTGATATGTGTCATT
GCCTTTCTTCTTTTGTGAGCTTTTTGTTTTTGTCCTAGATTTTTGGTGTC
TCCGGGTGATGTGTTGCGTGTTTTCGAACAAATGATGGAAGAGAGGATTG
TGCTGTAGCCGATTTGGGTACGATCAGAAGGGCTATCGACCTAGTTTTGT
TATGAACGAGATGGGGAAATTTGAGTTAGGCAAAGTAAGGCGTCCAATGA
AGATACCTGTTGTGTCGTTTTGATCACCGCTTCTCGTACGTTTGGAGGGA
AAGGAAAGCAACAAAAAGAGAGGGAGGAGGCCGTACAAATGACGAAAATG
CACCTGAACACACATGACATCACTAGTCTCTGGATGGGTTATTTTTACAT
CCTTTCACTCTCGTTTTGTATCAAACTTCAATAGTTTTTCTTCCCCTTCT
CGTTTTCTTCTGTTGCTTTTGTCGGCGATCGCCTCCCACCCACCTACCCA
CGCACCCACGACACGCTAAGGTGGATGTGCCGGCCTTGGCTCTTCTCGCA
CGCGACGACCCGCTCTGCCCGCCCATGGCGTGGGAGGGGGCGCTGAAGCG
AGCGGCCAAGAGCAATGGTATCATCGTGGCCATCACGGACAAGGGCGGGC
ACTGTGGTTGGTTCGATGGTCTCGGAGCTGGTTCTTGGGTTGATAGGGTA
AGAGATGGGAACACACGAAGGATGGGCGTACTGGTGACAGCGTATGTGGT
AGTCACGAGGCCAGTGGCTGAGGAGTGTGGGGGTGGTTAGTTCGTAGATT
GGCGTTTATGGATATCCCTTGTGGGACAAGGAGGCTTCTTAGCATTTTTT
TGGTCATGTCTTCAGTTTCTTGGCACAAAGCTAACAGATGCGAGGTGGCA
AAAGTAGTAAACTACCTGGGTGACACAATTATACTTCCCTCTTTCCCCAC
CTTTGATGTTTTCTTGTGCTGATATGAACATTGCAATCCAGCTATGGTTC
TAATATGAGATACAAGCTACATAACCTCATCTTGACATACTCAAACTTTT
GAGATACAAGCCGTACACCCTTAGTGTGACCCCCTTTCTCATTTCATCCT
CCCGGCAAACCCTGCGCGACCTGCCCCCCCCCCCAACCGTTATTGCCATC
CCGAATCACAGGCTGCCGGAGACTTTTTGGCGAATGCTCTGGAGCTCAGG
AGAGACGAGCTTGCTTCCAGTGGCGCAAACAATAGCACTACGACCACGAC
GAGCTAGCCCACGCCAGGGGAGAGTGCCCCATTGAAGTTGGTGGTATGGG
CCGTTCTGAATGCCTGGGACCGTATTGTTGCACTTGTTGTCGAGGTCTGG
AGACTGGGGTGCACCATAGCAATTGTTGTGCGATTGCGATTCCACGTGGT
GGTGCTCTGCTTGTGTGTATCTATGTATCGCACGCACACCATTTGCCTGT
ATAAACTGTGGAGAGGGAGGTTCACTTGCTCTTGGACCCAGGACGAACAT
TGGTTGACACTCGAGAATCCTGCTCTCTTTTCTTTTCTTTTCTCTTGCTT
TTCGTTTCCTTTTTTCTTCTTGAGGTTGGGTCGTAGCCCAAAACAATTGA
CGTGTCTTCTCGTCCTTGAAGGGTTCGAAACACGGACAATGGAGGAGGGC
ATGGTGTTCACATGTAACCAGCAGTTACCGTGCTGTGTCCACCGCATGGT
GGCGCTGCTTGTCTATCGTGCGTCCAGCAGTGCTGTACATGATGTGGCGA
TAGAGGTTCACTCTCATTGAACCCAAGGGATTATTTATGTTATTTAAGAG
CCCTGCCGTTAGAGCATGGACTCGGCGCTGGTGCCATGGTATCAACCGCT
GTTGCTTGATCACATGGTAAAGCAATACCTGACTTGATTCTTTAGAGTAT
TCGGTATTTTGTTTTTTCTATGGTGTTCAAATTTGTCTTGTACCAGCGTG
TATATCTCTCATTTCGGCAACTATGTGTCTTAGCCGGAAGAGGGGAAGTG
GCGGGGCGATAGTTTCCGTCGGTGTTGTGATGTCTTGGTGTGATGTGTTT
TTTTTTGCGTGAGAGAATAAGGTTGTGTATTGGGATTATCTTTCTGCTTC
TTTTGTCACGACCTTTTGGCGGTGTAGAGAGTGATAAGACAAGAGGCAAG
GATTACGTGTAGGATGGCCCTGTAGCTGATTTTGTAAGGCCACAAGGTGG
TGGTGCGGTCTTCCCGTTTGCCATGACAAACGCTACGTCTAGTCGTGCCG
CATGGAAGGCGTATCGTTCGACTCCCCCTGTCGGATCGTCTTCGATATGA
TACTTGATTGTTTCACACTTGTTTGTTTTCTGCCTCATATCGAGTTTCTT
TGCGTTCGGAACGCAAGGATGCGAGGGGATCACAAAGAAAAGAAACGGAT
TCCGTCGGATTTAGGGAGATTCTGGTGTATGACATGGTACACGATACAAC
CTGCGATAAATAGTCGAAATACTCTGTGTTGATGAGCAACTCTTGGGACT
TACGCTGGAGCGGTAAAACAACCATTGGATGTGCCTGTGGGAGCTTGTAG
AAGGGAAGGAAAGCCATATAGAAGAGAGAAGATGTGCGAAGGCTTGAGAT
TGTTTATGGGTTGTCAAGTTCGCGATTCTTTCATGTCTGAAAATAGTGTT
TTCCGTGGTGTCGACAACGGTCGAAGCGAGAGTGCCGAGGAGACACAGGT
GGGCGGGGGGGTGGATACCTTGCGGGATATTAGGCTAAAAAGTCTAATTT
TTCACGCTATGGTCAGGTCATCAAAGTTCGCACACATAGTTCGAGGATGC
CAACGGCCTTTCCAAACCCGGTATAAGGTGTCAAGACGTCGGCAGAACGT
AAAAAAAGGACAAGCGACTTATCACGTCGTGTAAAGCATCGCAGTAGCCG
CCTGTGTATCCTCTAGAGGAATGTGGAGAAGGTTGGTGTCGCTCCAAGAT
TTGAGGGATCAGTTGTGGTTGAGGCAATGGCGCTCCTGAGAGTGGCGCTC
AACCATCTTCATTGCGTTAGCTTGGTTGTGTTTGTTTTTTTGTTTTTTTG
TCCCCCCAAATGCCACCAGCGCACATACGCGCCTTTGGTTTTCTCAAGAA
TTTCATGTCCGGAGTATGAGCAACGTTTGTGATTTACCTCACCGGAAAGA
GGTTATTATATGGCAACAACAGGTATGCGTATCATCTTTCATGGGACAAG
AATTTGTGGTGCGATTTGAGGGTTGCCGTACCAATGCTGTACACGAGTAG
ATGCTGCTACCTGTTGATGGTGTCTGTAATCAAGTATGGGTTGTAGTGAT
GGAAAGCCGACATAGCTCTCATGTGTTGGCTGTTTGGACGGTCGGGACTA
TACTGTATTATGTATCGTTAGCTTTAGAAACGATCAACAGCATGGAGTCT
TAGGTTTGTTGTCTCCATCGGGATTGCGCTGGCAGGAGTAATTGGTTGCT
TACCCAGTCTTCAAAACTGATCCTCTTCACAATGAAGTGACGATGTCATT
ATTGACGGTGCCTTTTAGCCCTCCAGCTTACTAAAGTCAAAATGGTAATT
CGAGTTGTTTGCGCCCAGGTACCTTCCAAATGATTTCCCTGAGTTCAGTT
TCATTCCTTGAACGTGGTCCTGCGGTGTCCTTCTGTGGTTCTTGGTTCAT
AAAATCAGGCGCGCGGGAGAGGTGTCACCTGTACCCCTTTCCTCCCGTTG
TGTACCGAGCTGTTTGTATACCAAAGTATCCGGTTGTGTCCAGTTTCATT
TAAACTAGTCAGGCGACAGAGATGGAGATTGTGGCAGCTCTGTCTTAGGA
ACTGGATCCATGTCAATGACAGTTGGGCTTCTTCACGGCAGTGCCGTGTT
CCTGCACCATATACAGCCATTTTGGGTAGTGTTTATATGATCCTTAGAGC
GAACGAGACCTGAGCGATGGTTGGCTATCGTGCCCATGCTAGCAGTGCCG
CTTCACTGCGAAGAAGAGACGAAGAGCGACCAGCACTCCTCAGCAGCAAG
CATAGCTCGGGTTAGAGTGTGTAAAGCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig55:1217..6545+

>mRNA_H-paniculata_contig55.12962.1 ID=mRNA_H-paniculata_contig55.12962.1|Name=mRNA_H-paniculata_contig55.12962.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at H-paniculata_contig55:1217..6545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGTGGGTTTCAGCTTTGGGGGTTTCTTGCTCACGGCGCTCGCGGG
CTCGGTACCGCGGGAGGAACACGGCTTTTGCGGCATTATGGGAGTGGGTT
TCAGCTTTGGGGGTTTCTTGCTCACGGCGCTCGCGGGCTCGGTACCGCGG
GAGGAACACGGCTTTTGCGGCATTGTGACTATCTCGGGGCTTTTCGACAT
GTCATCCATGATGGACCACATCGCGGCGCAATACATCCACTCGTACGCCA
GCGCCAACACCCGCGTCACCGTCCGCAACTACCAAAAGTTCAAAGTCTTG
GAAACCCTCACGTCTGCCGGAGACGTCGCTACTGCTGACTTCATCAATCC
ATCAGGAACCTGCTCGCGCGCGCCGGAGTGCCCTGGAGCATCCGAGAACG
CCGCCGCCGGTGCGTGTGGTGCAGCAGCAACCTCTAATGACGCTGCTGCC
GCCGTCAGCACGGCATCTACTGCTTCTGCTGTTGGTGTTGGTGTCACTCC
CGTCTGCCGCTCCGTGGCCAAGCCAGTCGAAGGTTCCAATGTTGTTAGTC
TTGCAAGCCCCGTCGCCGCGCGTAAAAACTGTTGTTCTTCTGTCCCTGGA
TCCCCTGGCCGAGTCGGAGGGGGTGGGGGACCGGGGGTAGTGGAGGTTAA
GGCGAAGGATTTGGCGAAGATGACGCACCCTATTGCGTTTCACGAGGGGC
TGACGCTGCCGTTCACCGGGGATTCTAGCGTGGAGGCGTACTACGAGCGC
ATCGAGGAGATCATGAGCCCTTATATTGAAGCGGTGACTATCTCGGGGCT
TTTCGACATGTCATCCATGATGGACCACATCGCGGCGCAATACATCCACT
CGTACGCCAGCGCCAACACCCGCGTCACCGTCCGCAACTACCAAAAGTTC
AAAGTCTTGGAAACCCTCACGTCTGCCGGAGACGTCGCTACTGCTGACTT
CATCAATCCATCAGGAACCTGCTCGCGCGCGCCGGAGTGCCCTGGAGCAT
CCGAGAACGCCGCCGCCGGTGCGTGTGGTGCAGCAGCAACCTCTAATGAC
GCTGCTGCCGCCGTCAGCACGGCATCTACTGCTTCTGCTGTTGGTGTTGG
TGTCACTCCCGTCTGCCGCTCCGTGGCCAAGCCAGTCGAAGGTTCCAATG
TTGTTAGTCTTGCAAGCCCCGTCGCCGCGCGTAAAAACTGTTGTTCTTCT
GTCCCTGGATCCCCTGGCCGAGTCGGAGGGGGTGGGGGACCGGGGGTAGT
GGAGGTTAAGGCGAAGGATTTGGCGAAGATGACGCACCCTATTGCGTTTC
ACGAGGGGCTGACGCTGCCGTTCACCGGGGATTCTAGCGTGGAGGCGTAC
TACGAGCGCATCGAGGAGATCATGAGCCCTTATATTGAAGCGGTGGATGT
GCCGGCCTTGGCTCTTCTCGCACGCGACGACCCGCTCTGCCCGCCCATGG
CGTGGGAGGGGGCGCTGAAGCGAGCGGCCAAGAGCAATGGTATCATCGTG
GCCATCACGGACAAGGGCGGGCACTGTGGTTGGTTCGATGGTCTCGGAGC
TGGTTCTTGGGTTGATAGGGTGGATGTGCCGGCCTTGGCTCTTCTCGCAC
GCGACGACCCGCTCTGCCCGCCCATGGCGTGGGAGGGGGCGCTGAAGCGA
GCGGCCAAGAGCAATGGTATCATCGTGGCCATCACGGACAAGGGCGGGCA
CTGTGGTTGGTTCGATGGTCTCGGAGCTGGTTCTTGGGTTGATAGGGCTG
CCGGAGACTTTTTGGCGAATGCTCTGGAGCTCAGGAGAGACGAGCTTGCT
TCCAGTGGCGCAAACAATAGCACTACGACCACGACGAGCTAGGCTGCCGG
AGACTTTTTGGCGAATGCTCTGGAGCTCAGGAGAGACGAGCTTGCTTCCA
GTGGCGCAAACAATAGCACTACGACCACGACGAGCTAG
back to top