mRNA_H-paniculata_contig54970.12959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54970.12959.1
Unique NamemRNA_H-paniculata_contig54970.12959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.240e-53
Identity = 124/305 (40.66%), Postives = 172/305 (56.39%), Query Frame = 1
Query:   19 RCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTRMPQASV---RIAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELSEDDRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAVDGHLTV-HPYHAKLERMDTSDPMYMSTLEAIARFCVEENDAEEA 921
            R LVVAD++ E  V+EELK  G+W+L+T+++ DL    G   +++D V   E   VLR  A L  D  LP AA+++M  C Y  M LAF  RWGVVR + D++AW  AL  I + + R     +   R A+L+ G ++L  ++   KELYLSLA+LP  L F S   A LLY DE S D+ E A   ++ L R +IL  + +G YRVHE HA FV+E    +  ERE A+  WR + S L A+ +  +  L K+W  +  ++G   V  PY A L+R+D S P     L+  ARF     D  EA
Sbjct:  258 RFLVVADDIREPEVLEELKWAGVWVLYTSRRDDLLT--GAPLLRLDAVTKEEGGMVLRRAAGLGDDATLPPAAHELMQRCEYGAMQLAFAGRWGVVRGKSDEEAWRAALGHIAEAQKRGGNGRLLAWRDAMLRIGPDELEADSLHTKELYLSLAILPKGLAFRSKVAAVLLYGDECSADELEAAGKALETLERLSILTLEVSGKYRVHEVHADFVRECEVANNEEREMALARWRGYASDLRALSTYSSAWLVKIWDVIAQLEGTGPVASPYDAALDRVDPSSPKLAKALKRAARFHWRREDRLEA 560          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 9.590e-48
Identity = 117/316 (37.03%), Postives = 166/316 (52.53%), Query Frame = 1
Query:   19 RCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTR---MPQASVRIAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELSEDDRE---TAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEA-VDGHLTVHPYHAKLERMDTSDPMYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            R LVVAD+V E  V++ELK  G                              A+ VLR  A+L     LP A Y++M  C ++V+D+AFV RWGVVR RR +KAW  AL RI + +     +   S R +VL+AG E+L V+NP+ KELYL+LAVLP  L F S   AALLY+D LS +D E    A+ +   L RW+IL R   G YRVH+ H+ F++  ++ +   +++ +  WR++ISS+ A+ +     L K+W ++ +  D  +   PY   LE MD         L     F +   D E A   F +LL
Sbjct:    9 RVLVVADDVREAEVLQELKTEG------------------------------ADMVLRRAADLDESAVLPDAGYELMRRCEFVVLDIAFVGRWGVVRGRRKEKAWQMALDRILEAQAGGEGVGPLSWRASVLRAGLEELAVDNPLNKELYLALAVLPMGLTFPSEVAAALLYDDALSGEDLEDLEVAEEVAATLERWSILIRMGGGNYRVHDEHSDFIRGCLSTNKDTQDRVLRRWRRYISSVRALLACEPEDLVKIWDSLASDQDDVIDPRPYDRALEAMDMPSAELPRALHLAGFFYMVREDGEGACSTFSKLL 294          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.620e-47
Identity = 115/329 (34.95%), Postives = 175/329 (53.19%), Query Frame = 1
Query:   16 KRCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTRMP-QASV-----------RIAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELSED-----DRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAVDGHL--TVHPYHAKLERMDTSDPMYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            KRCLVVAD+VWE+ ++EEL+ TG+W+LFT++ PDL        + VDQ+  AEAE +LR  AEL +   LP AA +++  C  M   L FV RW  V+   D++ W+EA+  I+ + + M  +A+            R+A+L+AGF  L  +N     LYLSLAV+P    F + + A  L++D   E       R+ AK +V  L +WA++    N  +R+H+AH+ F + ++      R  A+  WR   S L+ +RS     +  LW A E + G       PYH  L+ +  S P  + +L+A+  F + E   E    +  RLL
Sbjct:  369 KRCLVVADDVWEVDILEELRHTGMWVLFTSRDPDLVERVEGSVVPVDQLSKAEAECLLRGAAELSTGSSLPSAAAQVIERCDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDEDLSGVKRVAILRAGFLDLAAQNGFNPLLYLSLAVMPDGRAFGAKEAAVFLFDDWAEERASQRRTRQAAK-VVANLEQWAVVTMHGNL-FRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPECIPSLKAVVEFGINECAWEVTHDVALRLL 695          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.110e-47
Identity = 116/330 (35.15%), Postives = 175/330 (53.03%), Query Frame = 1
Query:    1 MRKHEKRCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMH-LCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIE-------QQRTRMPQASV-RIAVLQAGFEQLGVENPML-KELYLSLAVLPHDLIFDSSDVAALL---YEDELSEDDRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAV--DGHLTVHPYHAKLERMDTSDPMYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            M + +KRCLVVAD+VWE  V+ +LK+TG+W+L TT+ P++        + VDQ+  AEAE VLR  AEL    RL   A +++  +C ++ MD+AFV  W +VRH  D  AW+EA+ +I        +    M  + V R+ +L+AGF+ LG E   L ++LY+++AV P    F  SD A LL   +  + +    + A   +++L RWA+L    +G YR+H+ H  F +++I      R+  V  W   IS L+         L  +WRAVE V  DG   + PY  +L  M  SD      L+ +A    +E    E   L + +L
Sbjct:  392 MTRTKKRCLVVADDVWEPPVVAKLKETGMWVLLTTRFPEIVEP--NEGVDVDQLTPAEAEDVLRGAAELPRGQRLCDPAMQVLDDICGFVAMDIAFVGSWSMVRHTDDSGAWAEAVSKINDTIVDVREDADGMNDSQVKRLGILRAGFDYLGEEEGTLAQKLYVAIAVFPDGYAFGVSDAAVLLNDTHPPDPAPHHMKVASRAIEILERWAVLTMNASGKYRMHDTHMDFARDKIRDQGDVRKPVVRRWTSRISRLDFAVGRDVYALSDIWRAVEWVGGDGWFDLRPYDKELVSMG-SDCSKSHALDVVAELYEQEQKLAEMETLTREVL 718          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 3.080e-46
Identity = 118/319 (36.99%), Postives = 167/319 (52.35%), Query Frame = 1
Query:   16 KRCLVVADNVWELGVIEELKKTGLW-ILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTR----MPQASVRIAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELS---EDDRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAVDGH-LTVHPYHAKLERMDTSDPMYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            +R LVVAD+VW+  V++EL++  +W +L+T++  DL   A    + +DQ+   EAE VLR+ AEL  D  LP AAY +M  C Y  +DL FV RW   R R  + AW  AL  I   +TR    +P  S R AVL  G E+L  EN   +ELYL+LAV+P    F     A LLY D  S   ++DRE AK + + L RW+I+ R   G YRVH+ H  F++   A +   R   +I WR+++SS+ A+ +   + L + W  +    G  +   PY   L  +  S       L   A F  +      AS  F +LL
Sbjct:  160 RRFLVVADDVWQTEVLDELRRASVWGVLYTSRNTDLLPRAPV--VLLDQLDREEAEMVLRNAAELAKDACLPEAAYDLMRRCEYAALDLDFVGRWSRTRRRTSELAWRGALDCIVDAQTRGEGRLP-LSWRAAVLHTGLEELAGENSANRELYLALAVIPRGQPFPPDVAAVLLYGDGRSGEEKEDREEAKNIFETLERWSIITRVGGGWYRVHDEHTDFIRASFAANQHARNTTLIRWRRYMSSVSALVTLSEDWLSEGWNVLAEAQGEPVPSQPYLEALGGLAPSSADRPMALRTAASFYRDREQWMPASDYFSQLL 475          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A6H5JK89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK89_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.410e-36
Identity = 115/344 (33.43%), Postives = 175/344 (50.87%), Query Frame = 1
Query:    4 RKHEKRCLVVADNVWELGVIEELKKTGLWILFTT-QQPDLAAAAGTRA------------IQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTRMPQASVR----IAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELSEDDRETAKG----------LVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAVDGHLTVHP--YHAKLERMDTSDP-MYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            R+   R L+VAD+V+E  V+EEL+  G W+L+TT +        G R+            +++D + DAE E VLR  + L ++  LP+ A  ++     +VMDLA++ RWGVVR   D KAW  AL  +  +     Q   R     AVL AG   L   N   K+LYLSLAVLP  L F  +D AALL+         + AK           ++ VL R ++L  +E G Y +H +HA FV+E I+   + R++A+  WR+H S+  A+ + P     ++  A+ ++D  +   P  Y A L+ MD SD   + + LE +A+      + E A   + RL+
Sbjct:  403 RRWRPRYLIVADDVYEPEVLEELQGIGAWVLYTTTRSASFIRRNGERSEGDGDGGDHADVLRLDNISDAEGETVLRRASGLDAEAELPQPALDLIKSYGSVVMDLAYIGRWGVVRGTTDAKAWEAALNSVFLEGGDGGQEWTRRRWHTAVLFAGMADLARLNDKAKDLYLSLAVLPKGLSFTPTDAAALLFGGGGDTKATQAAKAATPDLGAVMEVLGVLERCSVLFLEEGGRYCMHGSHADFVRELISCFPLSRKRALGRWREHTSTPAALFAWPVEDSVRIQWALLSLDDAVESPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLV 746          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: D7G2X0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X0_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.480e-35
Identity = 112/342 (32.75%), Postives = 172/342 (50.29%), Query Frame = 1
Query:    4 RKHEKRCLVVADNVWELGVIEELKKTGLWILFTT-QQPDLAAAAGTRA----------------IQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDDKAWSEALRRIEQQRTRMPQASVR----IAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDEL-----SEDDRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTPTNVLQKLWRAVEAVDGHLTVHP-YHAKLERMDTSDP-MYMSTLEAIARFCVEENDAEEASVLFKRLL 945
            R+   R L+VAD+V+E  V+EEL+  G W+L+TT +        G R+                +++D + DAE E VLR  + L  +  LP+ A  +      +VMDLA++ RWGVV    D KAW  AL  +  +     Q   R     AVL AG   L   N   K+LYLSLAVLP  L F  +D AALL+  +      +  D      ++ VL + ++L  +E G Y +H +HA FV+E I+   + R++A+  WR+H S+  A+ + P     ++  A+ ++D  +   P Y A L+ MD SD   + + LE +A+      + E A   + RL+
Sbjct:  119 RRWRPRYLIVADDVYEPEVLEELQGIGAWVLYTTTRSASFIRRNGERSEGDXXXXXXXGDHADVLRLDNISDAEGETVLRRASGLDPEAELPQPALDLFKSYGSVVMDLAYIGRWGVVHGTTDVKAWEVALNSVFLEGGEGGQEWTRRRWHTAVLFAGMADLARLNDKAKDLYLSLAVLPKGLSFTPADAAALLFGGDTKAAKAATPDLGAVMEVLGVLEQCSVLFLEEGGRYCMHGSHADFVRELISCFPLSRKRALGRWREHASTPAALFAWPVEDSVRIQWALSSLDDAVEPPPPYDAMLDGMDQSDADTFSAVLERVAQVQALAGNLEGAHAKYTRLV 460          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.040e-20
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   22 CLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVRH-----RRDDKAWSEALRRIEQQRTRMPQASV-------------RIAVLQAGFEQLGVENPMLKELYLSLAVLP 480
            CLVVA++VWEL V+E+L++TG+WIL TT+ P +        + VD++ + EA+ VLR  A L     L  AA K++ +C Y+ MD+AFV  W  V        +  +AW+  +  I  Q   + + +              R+AV + G + LG E+P+ + LY  LAV P
Sbjct:  410 CLVVAEDVWELPVVEKLRETGMWILLTTRNPSMVEP--NEKVFVDRLEEMEAQNVLRRAARLPPGQSLCDAAMKVLEVCGYVAMDIAFVGSWSSVNTVGNFAPKSSRAWAGVVTEITAQMDDVRRHAQFRNADAVDHLDINRLAVFRTGLKYLGREDPLAQALYAMLAVFP 578          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 2.950e-13
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   19 RCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWGVVR 309
            +C VVAD+VWE  V+E+L++TG+WIL T + P +        + VD++   EA+ VLR  A L     L   A K++ +C Y+ MD+AFV  W  VR
Sbjct:  310 KCRVVADDVWEPPVVEKLRETGMWILLTARNPSMVEP--NERVFVDRLEKMEAQNVLRGAARLPPGQSLCDVAMKVLEVCGYVAMDIAFVGSWSSVR 404          
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Match: A0A7W3QS81_ACTNM (WD40 repeat protein n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QS81_ACTNM)

HSP 1 Score: 61.6 bits (148), Expect = 8.330e-7
Identity = 62/235 (26.38%), Postives = 109/235 (46.38%), Query Frame = 1
Query:   16 KRCLVVADNVWELGVIEELKKT--GLWILFTTQQPDLAAAAGTRAIQVDQVCDAEAEQVLRHGAELQSDD-RLPRAAYKIMHLCHYMVMDLAFVARWGVVRHRRDD--KAWSEALRRIEQQRTRMPQASVRIAVLQAGFEQLGVENPMLKELYLSLAVLPHDLIFDSSDVAALLYEDELSEDDRETAKGLVQVLRRWAILDRQENGGYRVHEAHAMFVKERIAGHAVEREKAVIL 705
            +R L+V DNVW  G ++ + +   G  +LFTT+  DL    G   ++VDQ+   +A Q++  G    +D   LP +AY++      + + +A         H  D       + LRR++ + T   + +   A +  G + L   +   ++ YL LAV      F ++  AAL Y   L+ED   T + LV+++ R ++L   + G Y  H+ H   + +R+    V      +L
Sbjct:  194 RRLLIVLDNVWTRGPLDAVLELAPGCPVLFTTRISDLVTTVGAAGVEVDQLTQRQALQIV--GRWTDTDPVALPPSAYRLCTRLQNLALGVAMAGAMAARGHSFDHILTLIDQDLRRVKGESTPAYEHATLRAAIDVGIDDLPTGDD--RDRYLQLAVFTGRGPFPAAAAAALWYP--LTED--RTRELLVELVGR-SLLTVADAGWYVAHDLHYDTITQRLGDDRVRAAHTALL 419          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54970.12959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KZP3_9PHAE3.240e-5340.66NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7G246_ECTSI9.590e-4837.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFN6_ECTSI1.620e-4734.95NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KE50_9PHAE2.110e-4735.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL31_9PHAE3.080e-4636.99NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JK89_9PHAE1.410e-3633.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X0_ECTSI1.480e-3532.75TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K0A6_9PHAE5.040e-2035.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G330_ECTSI2.950e-1341.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7W3QS81_ACTNM8.330e-726.38WD40 repeat protein n=2 Tax=Actinomadura TaxID=198... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54970contigH-paniculata_contig54970:138..1082 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.1
Seed ortholog evalue7.4e-55
Seed eggNOG ortholog2880.D7FZY7
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons1
Model size945
Cds size945
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.739858-CDS-H-paniculata_contig54970:137..10821622930571.739858-CDS-H-paniculata_contig54970:137..1082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54970 138..1082 -
1691481353.4641433-CDS-H-paniculata_contig54970:137..10821691481353.4641433-CDS-H-paniculata_contig54970:137..1082Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54970 138..1082 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54970.12959.1prot_H-paniculata_contig54970.12959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54970 138..1082 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54970.12959.1

>prot_H-paniculata_contig54970.12959.1 ID=prot_H-paniculata_contig54970.12959.1|Name=mRNA_H-paniculata_contig54970.12959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp
MRKHEKRCLVVADNVWELGVIEELKKTGLWILFTTQQPDLAAAAGTRAIQ
VDQVCDAEAEQVLRHGAELQSDDRLPRAAYKIMHLCHYMVMDLAFVARWG
VVRHRRDDKAWSEALRRIEQQRTRMPQASVRIAVLQAGFEQLGVENPMLK
ELYLSLAVLPHDLIFDSSDVAALLYEDELSEDDRETAKGLVQVLRRWAIL
DRQENGGYRVHEAHAMFVKERIAGHAVEREKAVILWRKHISSLEAVRSTP
TNVLQKLWRAVEAVDGHLTVHPYHAKLERMDTSDPMYMSTLEAIARFCVE
ENDAEEASVLFKRLL
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mRNA from alignment at H-paniculata_contig54970:138..1082-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54970.12959.1 ID=mRNA_H-paniculata_contig54970.12959.1|Name=mRNA_H-paniculata_contig54970.12959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig54970:138..1082- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGGCGGACAATGTGTGGGA ATTAGGGGTTATCGAGGAATTGAAGAAGACGGGTCTATGGATACTCTTCA CCACCCAACAACCTGACCTTGCCGCGGCGGCAGGGACTCGGGCGATTCAG GTTGATCAGGTGTGTGACGCAGAAGCGGAGCAGGTGCTCCGACATGGGGC CGAGCTCCAATCTGATGATCGACTGCCCCGTGCCGCCTATAAGATAATGC ACCTTTGCCACTACATGGTGATGGACCTTGCTTTTGTGGCGAGATGGGGG GTAGTGCGGCACCGAAGAGATGACAAGGCCTGGAGCGAAGCCTTACGACG TATTGAGCAGCAACGAACGCGTATGCCGCAGGCGTCTGTGCGAATTGCTG TGTTGCAGGCCGGCTTCGAACAGCTGGGGGTGGAAAACCCGATGTTGAAA GAACTCTACCTGTCGTTGGCTGTGTTACCGCATGACTTGATTTTTGACTC GTCGGACGTGGCGGCACTCCTGTATGAGGACGAGTTGTCAGAAGACGATC GCGAGACAGCGAAGGGGTTGGTCCAGGTTCTCAGGCGATGGGCTATCCTC GACCGACAGGAGAACGGTGGATACCGTGTTCATGAGGCACATGCAATGTT TGTGAAGGAGCGCATTGCAGGACACGCGGTTGAACGTGAGAAAGCCGTCA TCTTATGGCGCAAGCACATTTCCTCCCTTGAGGCCGTCCGATCCACTCCC ACGAACGTTCTCCAGAAGCTGTGGCGTGCCGTTGAAGCGGTCGATGGGCA TCTAACCGTGCACCCGTACCATGCCAAGCTCGAACGTATGGATACAAGTG ATCCAATGTATATGTCAACGCTAGAGGCGATCGCCCGATTCTGTGTAGAG GAGAATGACGCGGAGGAGGCCAGCGTGCTGTTCAAGCGTCTGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig54970:138..1082-

>mRNA_H-paniculata_contig54970.12959.1 ID=mRNA_H-paniculata_contig54970.12959.1|Name=mRNA_H-paniculata_contig54970.12959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig54970:138..1082- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGCACGAAAAGCGCTGCCTCGTTGTGGCGGACAATGTGTGGGA
ATTAGGGGTTATCGAGGAATTGAAGAAGACGGGTCTATGGATACTCTTCA
CCACCCAACAACCTGACCTTGCCGCGGCGGCAGGGACTCGGGCGATTCAG
GTTGATCAGGTGTGTGACGCAGAAGCGGAGCAGGTGCTCCGACATGGGGC
CGAGCTCCAATCTGATGATCGACTGCCCCGTGCCGCCTATAAGATAATGC
ACCTTTGCCACTACATGGTGATGGACCTTGCTTTTGTGGCGAGATGGGGG
GTAGTGCGGCACCGAAGAGATGACAAGGCCTGGAGCGAAGCCTTACGACG
TATTGAGCAGCAACGAACGCGTATGCCGCAGGCGTCTGTGCGAATTGCTG
TGTTGCAGGCCGGCTTCGAACAGCTGGGGGTGGAAAACCCGATGTTGAAA
GAACTCTACCTGTCGTTGGCTGTGTTACCGCATGACTTGATTTTTGACTC
GTCGGACGTGGCGGCACTCCTGTATGAGGACGAGTTGTCAGAAGACGATC
GCGAGACAGCGAAGGGGTTGGTCCAGGTTCTCAGGCGATGGGCTATCCTC
GACCGACAGGAGAACGGTGGATACCGTGTTCATGAGGCACATGCAATGTT
TGTGAAGGAGCGCATTGCAGGACACGCGGTTGAACGTGAGAAAGCCGTCA
TCTTATGGCGCAAGCACATTTCCTCCCTTGAGGCCGTCCGATCCACTCCC
ACGAACGTTCTCCAGAAGCTGTGGCGTGCCGTTGAAGCGGTCGATGGGCA
TCTAACCGTGCACCCGTACCATGCCAAGCTCGAACGTATGGATACAAGTG
ATCCAATGTATATGTCAACGCTAGAGGCGATCGCCCGATTCTGTGTAGAG
GAGAATGACGCGGAGGAGGCCAGCGTGCTGTTCAAGCGTCTGTTGATGAG
GAAGCACGAAAAGCGCTGCCTCGTTGTGGCGGACAATGTGTGGGAATTAG
GGGTTATCGAGGAATTGAAGAAGACGGGTCTATGGATACTCTTCACCACC
CAACAACCTGACCTTGCCGCGGCGGCAGGGACTCGGGCGATTCAGGTTGA
TCAGGTGTGTGACGCAGAAGCGGAGCAGGTGCTCCGACATGGGGCCGAGC
TCCAATCTGATGATCGACTGCCCCGTGCCGCCTATAAGATAATGCACCTT
TGCCACTACATGGTGATGGACCTTGCTTTTGTGGCGAGATGGGGGGTAGT
GCGGCACCGAAGAGATGACAAGGCCTGGAGCGAAGCCTTACGACGTATTG
AGCAGCAACGAACGCGTATGCCGCAGGCGTCTGTGCGAATTGCTGTGTTG
CAGGCCGGCTTCGAACAGCTGGGGGTGGAAAACCCGATGTTGAAAGAACT
CTACCTGTCGTTGGCTGTGTTACCGCATGACTTGATTTTTGACTCGTCGG
ACGTGGCGGCACTCCTGTATGAGGACGAGTTGTCAGAAGACGATCGCGAG
ACAGCGAAGGGGTTGGTCCAGGTTCTCAGGCGATGGGCTATCCTCGACCG
ACAGGAGAACGGTGGATACCGTGTTCATGAGGCACATGCAATGTTTGTGA
AGGAGCGCATTGCAGGACACGCGGTTGAACGTGAGAAAGCCGTCATCTTA
TGGCGCAAGCACATTTCCTCCCTTGAGGCCGTCCGATCCACTCCCACGAA
CGTTCTCCAGAAGCTGTGGCGTGCCGTTGAAGCGGTCGATGGGCATCTAA
CCGTGCACCCGTACCATGCCAAGCTCGAACGTATGGATACAAGTGATCCA
ATGTATATGTCAACGCTAGAGGCGATCGCCCGATTCTGTGTAGAGGAGAA
TGACGCGGAGGAGGCCAGCGTGCTGTTCAAGCGTCTGTTG
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