mRNA_H-paniculata_contig5495.12957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5495.12957.1
Unique NamemRNA_H-paniculata_contig5495.12957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5495.12957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5495contigH-paniculata_contig5495:6575..10709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size349
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5495.12957.1prot_H-paniculata_contig5495.12957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5495 6575..10707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.3044817-CDS-H-paniculata_contig5495:6574..66941622930571.3044817-CDS-H-paniculata_contig5495:6574..6694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 6575..6694 +
1691481353.3430278-CDS-H-paniculata_contig5495:6574..66941691481353.3430278-CDS-H-paniculata_contig5495:6574..6694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 6575..6694 +
1622930571.5202599-CDS-H-paniculata_contig5495:8524..87191622930571.5202599-CDS-H-paniculata_contig5495:8524..8719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 8525..8719 +
1691481353.3571994-CDS-H-paniculata_contig5495:8524..87191691481353.3571994-CDS-H-paniculata_contig5495:8524..8719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 8525..8719 +
1622930571.5328822-CDS-H-paniculata_contig5495:10677..107071622930571.5328822-CDS-H-paniculata_contig5495:10677..10707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 10678..10707 +
1691481353.3652267-CDS-H-paniculata_contig5495:10677..107071691481353.3652267-CDS-H-paniculata_contig5495:10677..10707Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 10678..10707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5495.12957.1

>prot_H-paniculata_contig5495.12957.1 ID=prot_H-paniculata_contig5495.12957.1|Name=mRNA_H-paniculata_contig5495.12957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
EISGIKWVAPEVTGLEHSDAIADFQDVAIAGDGNKRGESKVKRVYAGLGE
FDNKTDATSDNTRACPLGKARNSGDETSVVVRSSTGKHAGEEAETAATSV
VVKLKTCRRTIICWS
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mRNA from alignment at H-paniculata_contig5495:6575..10709+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5495.12957.1 ID=mRNA_H-paniculata_contig5495.12957.1|Name=mRNA_H-paniculata_contig5495.12957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4135bp|location=Sequence derived from alignment at H-paniculata_contig5495:6575..10709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTCGGGGATTAAGTGGGTAGCACCTGAGGTGACCGGCCTTGAGCA
TAGTGATGCAATCGCAGATTTTCAAGATGTTGCAATTGCTGGAGATGGAA
ATAAGAGGGGAGAATCTAAGGTGAGTTTTGCAGATGCATCGGTAAATATG
GCTACGTCACGCATGATGTTTCGGTTAAATCCATCGTCAAAGCCACACAC
TGGAACTGGGAGGTATGTCTCGTATATATGGTGCATTGTTACCGCGTGTG
GTGGCATGGAATCTCCGAACATAATGGTGCGAGTTTCATTCTGATACCGA
CTGTTGTACATACAGGCTGGTTCGGGCAAGATGACAGGCATAGCTTCGTG
TTCATTTTCCCACGGCAATTTTCCGAGTTTTCGAATGAAATTTTGCACAC
GTAGTCCTTACTCAATTCCCAAGGTTATCAATGTCTACTCTTTTTTGTTT
CACCTTTTTCACCGGTTTTCCGGGGTCCTGAGGTGATGTTGGTAATTTTT
GGGTCTTTGGACCCCAAAAATACGACGAACTAAGGCGAAGAAAAAAAAGA
CAAGACACTGACGACCTCGGGAATTGGGTAAGGAATATATGTGCAAATTT
CAATCGAAAACTCGGAAACTTGCTGTGAAAAAATGGAAAAACGTAGATTG
GGCTACCTGAATATACGTGTTCTGGTAATATACTGGAATTATAACAGAAA
CCAGGTGAATTCGCGACGGCGTCCTGGTGTCAGTGTGTGTCCACTTCCGC
ATGCATATCGCTGTGTACCACTGCTCAGTTGGCGCGCCACTGCTGTGGCT
GCTGCTGCACTGGTATGTGCGCCCAAAATCCATACATGAGACGCATCTAC
GAAATGTAGTATAACTACACGATGACGTCAGTTTTTGGGAGATGGTGCCT
CTTTGTTTTCTATGTATATTGTACCCTTCTGCTCCACACGTAACTATTAG
CCCACCAAGGGTTCTTGCTGTCAATCTGGCGACGCCTTCGGGTTGATAAA
CTCCTGAGAATCACTCAAGTATTTTTTCCGTCTAAATCGGATCAGCGTCA
ATCAAACGCAATCGTTGGAAGACACTTCTCCGGGTTTCTACTAAGACCCA
GCTCGTGTGCAATCTCGGAATCGGTTTTGGGTTCAAAAATGGCCCATTCA
TGATCGCATTCGTTCTTCGTGTCATGTGTTTTCCATTTCAGTCATCCGTA
GAAAGGTAGCAGACGACGCATTGATGGGGATGAGTATTCAATCATGCATA
CCATATGTCATGATGTATTGTGAAGCGACCGAAGGCGTATCTTAGAAAAT
TTCGTAGACCACACGCCTACTCCTAGTGCGGAAATACTCCCACAGTATTG
CAGAGTATATCCAAGGTTTGGAACAAATCTCTACAGTTCAGGTATAATTG
ATAGCAAATAGGATCTTACAGAATGATACCTCTAACGCATAATGTTCTTT
CGTCGGAGAGAATCGTGACATTACTCCTGTGGTGACGTGGATGACATCTC
AGTTAGATTGGATTGCTGTCATTTCTCAAAGAAGCGAATGGTCTCGCGCG
CCCGCTTTTCCCCTCTCGATGTCGCACTCATCGCTTACGCATCGCTTCCT
TCGGTTTCTAGCCTATAACTTTGTTCTCGCGCCAGATTGGAGTGTGCTGA
AGTTACTGTGTTCGAGGAGTTATTAAGTAAGATGCATCAGAGTTTCTATC
TTGGTTTACAACGTGACGCCTTAGGCACTACTCAGTACGTACTTGAGTTG
CGACCGGTGAGTTAACCTATTCGTGCTTACAGAAGGCTGGGGTTGAGATA
TTAGAAAGTTGAGGTCTTATTGTCACCCACCTCTTTACAGTATGGTAGGG
GGAACCGATTCAGCCGAACAGCATGTCGGCTATTTATGTTTCTAGAGTAA
TTTCGCTCAATCCTCAATTCCCCCCGCGTTTCTGTCTCTGAACCAACCAG
GTAAAACGGGTGTACGCAGGTTTGGGGGAATTTGACAACAAGACCGACGC
TACCTCGGACAATACGCGTGCTTGTCCACTGGGAAAGGCGAGGAACAGTG
GCGATGAAACATCCGTCGTGGTGCGTTCATCCACTGGAAAGCATGCCGGA
GAGGAAGCGGAAACAGCCGCAACATCGGTAGTAGTGAAACTGAAGGTAAA
AATGAAGCAGTAAAGGGTACGCCACAATCAAGATCGGCAATACGTAGTTA
GCAGGGAGAGACAGGGTTTACTAAAAGTAAGCATGGCATTTTTATCGTTG
GACTGGACCTCAGGTCATGGACGCGCCTCAGGCGGTGCCTAAAACATTGG
AATTCAAGCTACCGCCAACAGAGAGAGCTGATGAACAAAGCGATAATTCA
GGGTCTGACGTATCGTGGGACGAGGTATCCGTAATAGACGGGAAAACCTG
GTGGGAAGCTGCTTCTGATGAGGTGAGCAAGCGATCTGACTGCCTGACAT
TTTGTAGTGAAAGAGAGAAAGACTCGAATAGGAGTCATCGAGATGAGCAG
TCGAATGTGGACTCGCGGCTTGCTATGGTGGGAAGTGACCATGCATATAA
TACTGCTGCGGTTGGAATATATCAGGAGCTTCCCCCGGTTGATTATACTC
GTGACGTCTTGCGTCGCCTAACCCAACCGTGGAACTTTATTGGGCGCCCT
ATTTTTCCTGGACTGCAAAACCTGACGAACGTGGCAAATGCCTTCTTACT
GGGCTGTAGTTGTTGAGATGTCGCGCATTCACCATATGACAACCTTTCGG
GAGTACACCAAACGAATACGTATCTCAATGGAAGTTATTCCGAGCCTTGC
GAAGTTGGTGCATACACGTAAACCAACATATTTCCTTGGTAGCGGTAACA
GCAGACAACATCGACCCTACATATGGCCGACTGGTTCAACGGCCAACTTC
AGCCTCAAGAGCACTCCGGCGCTGAGCTAATCGATGCCAACCCCACCTCC
AGATCCGTTACTAGCTTCCCAATGCGTTGTTCTCGAAACCAGGTGAACAA
CCACAAGAATAAACAAAATAACCACCCCAAATTACAGTGAACGCAACTGA
GTGCCCGCTCTAAAACGTGCGATGAGAACCAACGTTTTACCCGTCCTAAA
CCCACACAACAGTAACAACAACAACAATAAAAATACAACAACCAAACAGG
ATATCGAGGACGAGACGAGGAATCGAATGTCTCCAAACCTTCTCGCGGCA
TTAGGCCTAGCCACCGACGCAGAAAAGCGAGCGGAGGAGTTAGTCCGAGA
CCCTGACGACGGAACGACCGAGTTCAAATGGCACTCTCCGACGTTTTCCG
GCCTTAAAAATAGCAATCCCTTGACCACGTTACACCCTCTACTGGTGGGG
GATAACAAAGATTTCGAGATAGTGAAGACTCGGCGAGAATCGCTGTCAAA
CGGCGATACGCTTGGAGGTGAAGATAGAGGGGACAACGAGGGGGAGTGGA
GCTCGGATGACGAGGGTTGGGATTACGAAGGTTTGTGGCTGTATCCTGTT
CCTGTGCTATGGAATCGGTCTCAACTTGAACACTAGGTCTACGTTGGGTT
AAGGCTAAGACTGGGTGATGCCATCCTGTGCAAGGTGGAAACTAGTTCAT
ATCACGTTTCACCAGCGGAGGAGGAGGAGGTGGAGAGGAGGTTGTAGAGT
GCGTCAAAACAGCACTTGTCGAAACAGAGTTTTGGTGCTTCTATTTCTAG
ACGTCCCGCAGCCCGTAAGCTTGGTGTGAAATAAGCATGTCGTTGGAACA
GGTTGGGATGTATTTCTCGGTTTCCTTCCGCCCTTTCTTTATCCGGTTTT
GGGACGGATCGAAATTTTCGGATATTTCGGTAATAAAGCCAGTTCAATTA
ACTGGGACGGCGTGCGCTATCAATTTTTCATTTTTTTTCACAACAAATGA
CATAGCCATCCCCTACTACTGTTTCGGCACCGGAGAGCAAGCCGGAAAAT
CGGGAAAAAAATACACACGAACACGTGTACGTACAGCAGTACGGAAAATC
GAAACATGCGCCTATTAACACTCCTCACTTACGTCCCTTCTGCCTTCAAA
CTTCTCGGCCGCTTATGTCATTTTTCTTCCGCAACATGATGCGCATTGAT
TAGACTTGCCGGAGGACGATTATTTGCTGGAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5495:6575..10709+

>mRNA_H-paniculata_contig5495.12957.1 ID=mRNA_H-paniculata_contig5495.12957.1|Name=mRNA_H-paniculata_contig5495.12957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig5495:6575..10709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGATTTCGGGGATTAAGTGGGTAGCACCTGAGGTGACCGGCCTTGAGCA
TAGTGATGCAATCGCAGATTTTCAAGATGTTGCAATTGCTGGAGATGGAA
ATAAGAGGGGAGAATCTAAGGAGATTTCGGGGATTAAGTGGGTAGCACCT
GAGGTGACCGGCCTTGAGCATAGTGATGCAATCGCAGATTTTCAAGATGT
TGCAATTGCTGGAGATGGAAATAAGAGGGGAGAATCTAAGGTAAAACGGG
TGTACGCAGGTTTGGGGGAATTTGACAACAAGACCGACGCTACCTCGGAC
AATACGCGTGCTTGTCCACTGGGAAAGGCGAGGAACAGTGGCGATGAAAC
ATCCGTCGTGGTGCGTTCATCCACTGGAAAGCATGCCGGAGAGGAAGCGG
AAACAGCCGCAACATCGGTAGTAGTGAAACTGAAGGTAAAACGGGTGTAC
GCAGGTTTGGGGGAATTTGACAACAAGACCGACGCTACCTCGGACAATAC
GCGTGCTTGTCCACTGGGAAAGGCGAGGAACAGTGGCGATGAAACATCCG
TCGTGGTGCGTTCATCCACTGGAAAGCATGCCGGAGAGGAAGCGGAAACA
GCCGCAACATCGGTAGTAGTGAAACTGAAGACTTGCCGGAGGACGATTAT
TTGCTGGAGTACTTGCCGGAGGACGATTATTTGCTGGAGT
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