mRNA_H-paniculata_contig5495.12956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5495.12956.1
Unique NamemRNA_H-paniculata_contig5495.12956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5495.12956.1 vs. uniprot
Match: D8LQ40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ40_ECTSI)

HSP 1 Score: 49.3 bits (116), Expect = 6.840e-5
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:  167 YEVDYGSMNVSPEILRMLGAPDDVIAA 247
            YEVDY SMNVSPEILRMLGA ++VIAA
Sbjct:   48 YEVDYASMNVSPEILRMLGASEEVIAA 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5495.12956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ40_ECTSI6.840e-585.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5495contigH-paniculata_contig5495:1961..6565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5495.12956.1prot_H-paniculata_contig5495.12956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5495 1992..6565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.2047632-UTR-H-paniculata_contig5495:1960..19911622930571.2047632-UTR-H-paniculata_contig5495:1960..1991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5495 1961..1991 +
1691481353.3089154-UTR-H-paniculata_contig5495:1960..19911691481353.3089154-UTR-H-paniculata_contig5495:1960..1991Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5495 1961..1991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930571.2283432-CDS-H-paniculata_contig5495:1991..21001622930571.2283432-CDS-H-paniculata_contig5495:1991..2100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 1992..2100 +
1691481353.3189867-CDS-H-paniculata_contig5495:1991..21001691481353.3189867-CDS-H-paniculata_contig5495:1991..2100Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 1992..2100 +
1622930571.2443607-CDS-H-paniculata_contig5495:6458..65651622930571.2443607-CDS-H-paniculata_contig5495:6458..6565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 6459..6565 +
1691481353.3287878-CDS-H-paniculata_contig5495:6458..65651691481353.3287878-CDS-H-paniculata_contig5495:6458..6565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5495 6459..6565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5495.12956.1

>prot_H-paniculata_contig5495.12956.1 ID=prot_H-paniculata_contig5495.12956.1|Name=mRNA_H-paniculata_contig5495.12956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MMVANKNENDERNRSTSSSGEDECSDDDSYDYGFADDEDGNGEEEYEVDY
GSMNVSPEILRMLGAPDDVIAA
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mRNA from alignment at H-paniculata_contig5495:1961..6565+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5495.12956.1 ID=mRNA_H-paniculata_contig5495.12956.1|Name=mRNA_H-paniculata_contig5495.12956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4605bp|location=Sequence derived from alignment at H-paniculata_contig5495:1961..6565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGCAGGCCCTCTTCCTCCCTATCTAATGTATGATGGTAGCCAACAAGA
ATGAGAATGATGAACGCAACCGCTCGACGTCCAGCAGTGGGGAGGATGAG
TGCAGCGATGACGACAGCTACGATTACGGATTTGCGGATGGTGAGTACCC
ATCGCGGCAAATCTTCACCCCCAAACGGGCATGCAGTATGTTCGCTGTGC
GGCTGTTGAGGCTTTCCAGCGACATGGACTTCAACACGTTAAAAACAGTT
TTCTATCTTGTAGACGGACCTGAACCCAGCGTTCCACTCGTTGCCCTTGG
CATGACACGAAGGGTCATCCTACTTAGGAGTGTGTCTTCCTACTTATAAA
TGAAGTTTAACCACTTCCCCTAGCCTAAAGTCATGACTAATGACCTTTAT
TTGGAGGGATCCAATGCCCCTCGATCGCATCGAAACTATTGTAGGGTATT
TCATTACTTCCATGCCCCGACAGCATTGTGCGAAAGCACTCTTTTTGCCA
CGAGGGGGAAAATGCTACATTTTAAGCCTAAAAAGAATGTTTTCGCCCAA
CGATATGGGGGCACGGAGGTACAGTATGGACCCGGTGGTAAGAAACACTT
ATTTGGGTGGAGGCTGAACACCTGATTTGGGCGAGAAACACGAGCAGTGC
TGTTTCACTTCACATGGGAATTAGTATAAGTCCACAATTTGAGCTCCATT
TCTTATGCCGATTTTCGTTTTTTTTTTTAACAATTTGAGCCTGGGATAAC
CTCTTTCTTACTAGTGGGCCCCGACTGTAGTGAAAAACCTTCACACAGGT
TCGATGCGATCGAGGAGCATTGGGTCCTCCAAATAAAGGTCACTGGTCAT
GACTTTAGGTGAGGAAAAGCACTGTTTTGGGGTTGAACCTCATTTCAAAG
TTGAACCTCATTTTGGAAGACCCACTTCTCCTTCCCCCGTTCTGTAGTTA
CAGTAATTAGTCGTTTCCCATGTATATTTGCGGATGATTAGGTGATATAG
TATGGACCCTCTCATAAGAAACAGGGTCACAAAAATTCCGGCCTCGAGTC
TTTAAAAATTGAAGAAATGCATGAGAGGTGTTCAAGTCGCTTGGAGCGGC
GGGCGCAATAGTGAAGCCTGCACCTGCACCACGGAAGCTTCCTGTGTATC
AAGCGGGTCCTCCAGGTCGACGGGGGGGCAAAGCTCGTGCTCAAGCTGCC
CATGGTTCTGACAATATCACCAATGCGCTCATCTATGGTTCAAGAGGCCT
GTGAGTGCAATGGTCTGTCCAGTCAGTACTGCACTATCTGTTCCGTATGT
GTACTGCACTTTTTTCTATTTTTCGACATCGCACTAGTCCGTCCATTGAT
CGGGACCCGTCGATCCGAAGACTGCAAATATATGGCATGGTACATGCCTT
GTATTATCGCGATTTAGTACATTCCGAGCTTTGTGCATCTTGTGATGGGA
CACAGAATTTATTGAACTGCATGTGGAACAAAGGTACATTCTACAACATA
AACTAAAAACAACTTAAGTAACATCATCCGGCTACAGTCTGATGTAGACG
ATGTGCAATGCGCTGTTCTTGATTCTTCCGCCAGGATTCATCGATGAGGT
CCAGTCTGTTGATGCCGGTAATGGGCAGCGCGTCAAGCGGTTGTGGTGGG
GAAGTAGCTTGACGTGTTTCTGGAGAATGGTGACAATCTAGAAATGTGGG
AGTCGATCAAGCTTTCTTCATCTGACTGCCCGATATTGCTGACGACGTGA
GTCCCCAAGGCGATGGCCATCGTTGATAGGGACGAGACCTTTCGTAGACG
GTTGTTCGAAGATCGGGCTAGCAATGACACCAGACGGCACTGATGACAAA
CTCATCAACCTCAAAGGTCACAAGGGCGAGTACATTTTCATGCTCGAGGG
AGGTACGAGACGCCCTTGCCTGGGGTACGCATCTTACTCGCTCCCGCCGA
CGAGGAATATTTTTAAGGTTCAGCGACGAGGAGGAAGGTAAATTTGGGGC
AAGGGATGCTGGCAACCAGCATCACGAGAGTGACGTGGTGGCTATTCTAA
ACGATGATGATGACCTGGCTGATGATGAGGAAATCCTGCTACGGCAAGTT
CCAGCATGCTATATGATCTTGTCCGCAGCCCCAGCGGCTACTAACGCATC
GCTCGTGAAGAAACACGTCATGCTACTGCGGGGGCTGGGCTAGCTCAAGC
GATTCATCACGCGCCAGTCGCAAGAATGGACCCGCCGCATCCACCACTAT
AGAGTGTTCATCGAACGCGACGCCAGCACAATCTGTGGAGCTGACCATGG
ATCAATCTTGGGTGCTTTTACAGGATCTCCATGAAGAGAGAACATGTGCG
AATAGCAAGGCGGAGCTGGAGGCAGTAACAATGACAACGATGGCGACGCG
AGTAGAAGCGGGGGCAGCGAGGATCCTGAGGATAATACTACTGGTAGTGA
TAGCAATTGTAGTGATGACTATCGGAGAGAGTGGAAGGGATGATTGTAGT
GACGAGGGGCAGGAGAAGGCGGGGTGTGGGCACCGCACGGGTAGTAAGTG
GAAGCGAGGTGCTTCACCGAAAGGGGCTACGCCACCATCATTGTGTCCAG
TAGAGGCTGGGTTCGCACGCCTAACGTGCGCATGACCGACCACCAACCCT
AGGGAACTGTTGAGACGGAGTAAGAAAGAGGAAACATCACTAGTTTCTGC
GAGGAAAAATAAGAAATGCTTTTGGAGAAATGGAGCTGGTTTCTTGGTGT
ATAAGAAACTCAGCCTGATATTGAATCTCTGTTGCTTATGAGAGGGCCCA
CACTGTATGTAGACAACACAAGGCAAGAAACGAGGCATTACAGTCCCGGC
TTCGGACCGGAGGTTCTGATAGAGAATTAATCTGCGACGGGAAAAAAATC
ACCATCTTTTTACGAACAATTATGCACCCTGTACCTGGTACCATTCACGG
ACAGTAATTTGCGTACGCCACGGGCACAACTTGTACGAAGTAATAGTGGG
GCTGCTAGCAAATGATGACTAATGCAGTTAGTACTGACCAGTTGGGTGTT
TTGGCGTTGAGTAACTACTACACTAACAAGCCAAATATTGATTCACGTAG
AGGTTGTACAGGGCTCCGGAAATAAAGGTAAATCGACACAACAAGCGTTT
TCAGCCCTCAACTTCTTGTACTCTGGGGAGGCCCTCCGGGACGGGGATGT
GGCGGTCCCTTGCAGTACTAGATACGTGGATATGGCAACGATTTTATGGA
GAGTGGGAGGGATTTCTTGACGTTGCTGGTAGTACGCTATTGCATGCCAT
ACTTGTATTAACCCTGTTGCCGCCGGTTCCGGTCAAGTCCCTCCATAATC
CCCGTCTCCGAGAAAAAAGACAAACACGTCGGATGTTTTGACACAATGCC
TACGATATGATCACGAGTATCGGGAACTCTGCAGCCATGCAGACAGTCCT
GTGCGATTATGATTACAGACAGGAGTTGACATGTGTTTGCGCTCCACGAC
ATCAGCATTGGATCGAAACGCAAACCACAAACCACATCATAAGTGAACGG
TGTATATGTCATAGGGTCGTTTTTAACGAGCGAGTCTAATTTTACGTTTT
CCGATTTTTGACCGAGAGTTCATGTACCGTAACCGTGTTGTTCGGAAAAC
GGAAAATCAGGCTCGCTCGTTTACAACGATCCTTACGAAGCAGTACGCTG
AGACAATAAATCAAACGCACCAAGTTTTTACGGCGCTGTTCCGACGTCTG
CAGACAGGGCAGGCCGCAATAGACAGAAATAGTTCGGCATGATTTTGCGC
ACCATCATTGCAGCACTCGATAGGAAGGCAATTGTTATGAGGATAGAGGG
TCCGAGCAGTTGTGGGCAATTGGTTATCTATTTTCCTTTAGCGAAACGGG
CACTATGACATTTGGCGTCGCCGCAAGGACCCAGGTTCGATTCCTGGCAG
AGTCATTTGGAATATCATTCTGCATCGGTGTGTGTGGAATCCAAACCCAC
ACGCCAGAGTATGAAACCAAACAAAACCATGTACTCACGGGACCATGACA
ATGACACAGTTTTGTTTGTCGACCACCTTTAGCGTCAATCGGATGTCTTA
GGGGATCTTGTGACCCCAAACAAGTCGACTACTGTGTGTCAAAAGAGAAG
TTTTTGACTTGGCCGTTGGGCGAAACAACGTGCCTAATTGGCCCAAACCT
ATGTTTTTTGTGTAAATATCCTGATCATACTCCAGTATTACGAGGCTAAA
ATCCTCCCCCCCTCTTCGTGAAAAATGATCCCTTCCCCCCCTCCCCCCGC
CTTTGTTCCGAGCAGCCTGCGGCGCTAGAAGGGCTAAAAAATGCCAAGTT
TACTGCACGCGAAATAAGTTCAGAAATTACACTAGTGATGAACGTGTTAA
CGGCACCCCTCGGGTGAGTGCTATTAACAACGCATCCTATAAAATATCCA
CAACTAAACTATATGTACCGCAACAACCATGTAACACAAACTATGCAGAC
GAGGATGGAAATGGGGAAGAAGAGTATGAAGTGGATTACGGCAGCATGAA
CGTCAGTCCAGAGATCCTCCGCATGCTAGGTGCACCCGATGACGTGATCG
CGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5495:1961..6565+

>mRNA_H-paniculata_contig5495.12956.1 ID=mRNA_H-paniculata_contig5495.12956.1|Name=mRNA_H-paniculata_contig5495.12956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5495:1961..6565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTAGCCAACAAGAATGAGAATGATGAACGCAACCGCTCGACGTC
CAGCAGTGGGGAGGATGAGTGCAGCGATGACGACAGCTACGATTACGGAT
TTGCGGATGATGATGGTAGCCAACAAGAATGAGAATGATGAACGCAACCG
CTCGACGTCCAGCAGTGGGGAGGATGAGTGCAGCGATGACGACAGCTACG
ATTACGGATTTGCGGATGACGAGGATGGAAATGGGGAAGAAGAGTATGAA
GTGGATTACGGCAGCATGAACGTCAGTCCAGAGATCCTCCGCATGCTAGG
TGCACCCGATGACGTGATCGCGGCGACGAGGATGGAAATGGGGAAGAAGA
GTATGAAGTGGATTACGGCAGCATGAACGTCAGTCCAGAGATCCTCCGCA
TGCTAGGTGCACCCGATGACGTGATCGCGGCG
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