mRNA_H-paniculata_contig5490.12951.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5490.12951.1
Unique NamemRNA_H-paniculata_contig5490.12951.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5490.12951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5490contigH-paniculata_contig5490:2153..3056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size904
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5490.12951.1prot_H-paniculata_contig5490.12951.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5490 2408..2941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930570.232129-UTR-H-paniculata_contig5490:2152..24071622930570.232129-UTR-H-paniculata_contig5490:2152..2407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5490 2153..2407 +
1691481352.8557875-UTR-H-paniculata_contig5490:2152..24071691481352.8557875-UTR-H-paniculata_contig5490:2152..2407Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5490 2153..2407 +
1622930570.2736776-UTR-H-paniculata_contig5490:2941..30561622930570.2736776-UTR-H-paniculata_contig5490:2941..3056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5490 2942..3056 +
1691481352.8794045-UTR-H-paniculata_contig5490:2941..30561691481352.8794045-UTR-H-paniculata_contig5490:2941..3056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5490 2942..3056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930570.250209-CDS-H-paniculata_contig5490:2407..29411622930570.250209-CDS-H-paniculata_contig5490:2407..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5490 2408..2941 +
1691481352.8704517-CDS-H-paniculata_contig5490:2407..29411691481352.8704517-CDS-H-paniculata_contig5490:2407..2941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5490 2408..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5490.12951.1

>prot_H-paniculata_contig5490.12951.1 ID=prot_H-paniculata_contig5490.12951.1|Name=mRNA_H-paniculata_contig5490.12951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MFGCAAACPRGRLDPQGGDCPPSVLCSRSSGPAASTVGACTLLPDSLVFL
SSSPRCSRIRLTWSSMFELSPWLYVELSSPPARLPLLPSCDIFYGTTRKT
LVYWKFPRLLLPIDVWNKQRGLYTTSLLQVPFRETDESVRKGGVLHSPSR
TWAPKPVIRLHQNTVRPEPDQQEHNYM*
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mRNA from alignment at H-paniculata_contig5490:2153..3056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5490.12951.1 ID=mRNA_H-paniculata_contig5490.12951.1|Name=mRNA_H-paniculata_contig5490.12951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=904bp|location=Sequence derived from alignment at H-paniculata_contig5490:2153..3056+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACATCTCTCACGAAAGCTTCTTCACACCCATGCATCTTGGCGAAGTT
AATCATTTCGATCTCGAACTGGGCAAAATATTCCCAGTTACCAGAAAAGG
ATGGAGTATTTGGTCTAAATCGACCCATCAATGTGACAGGCATTGGCGAC
GCGAAGTTTCCTTCTACATTCCTCCTACCAAACACACCCTGTGACTCACC
GTCGGGGCTTGCACCCCTAGCCCCGTCACTGATGATGCGCTGATCTTGCC
CAACCATGTTCGGCTGTGCGGCAGCCTGTCCCAGGGGTCGACTTGATCCC
CAGGGTGGTGACTGCCCACCTTCTGTCCTGTGCAGTCGGTCTTCTGGCCC
GGCTGCCTCTACAGTAGGAGCATGCACACTCCTACCGGACTCCCTCGTGT
TCCTGTCGTCTAGTCCAAGGTGCTCGAGAATACGCCTTACTTGGTCTTCT
ATGTTCGAGCTTTCCCCTTGGTTGTACGTCGAATTGTCTTCTCCTCCGGC
TCGACTGCCGCTGCTTCCTTCCTGTGACATATTTTATGGAACTACCCGTA
AAACACTAGTGTATTGGAAATTTCCTAGGCTCCTGTTGCCTATTGATGTC
TGGAACAAACAAAGAGGATTGTATACAACTTCTTTATTACAGGTCCCCTT
TAGGGAAACAGATGAGAGTGTCAGGAAGGGGGGGGTGCTTCACTCCCCCA
GCCGGACATGGGCCCCGAAGCCGGTAATCCGGCTGCACCAGAATACAGTC
AGACCCGAACCAGACCAACAGGAACATAATTATATGTAACTGTCAGATCT
GTTCCAAAAGCATGCACAACCGATATCCTAACATGGTGTCATAACAGTCA
ATCTCTCACCCAGTCCTTCATCCCAGATGGGAGAACAACACATTCGAACA
TCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5490:2153..3056+

>mRNA_H-paniculata_contig5490.12951.1 ID=mRNA_H-paniculata_contig5490.12951.1|Name=mRNA_H-paniculata_contig5490.12951.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig5490:2153..3056+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGGCTGTGCGGCAGCCTGTCCCAGGGGTCGACTTGATCCCCAGGG
TGGTGACTGCCCACCTTCTGTCCTGTGCAGTCGGTCTTCTGGCCCGGCTG
CCTCTACAGTAGGAGCATGCACACTCCTACCGGACTCCCTCGTGTTCCTG
TCGTCTAGTCCAAGGTGCTCGAGAATACGCCTTACTTGGTCTTCTATGTT
CGAGCTTTCCCCTTGGTTGTACGTCGAATTGTCTTCTCCTCCGGCTCGAC
TGCCGCTGCTTCCTTCCTGTGACATATTTTATGGAACTACCCGTAAAACA
CTAGTGTATTGGAAATTTCCTAGGCTCCTGTTGCCTATTGATGTCTGGAA
CAAACAAAGAGGATTGTATACAACTTCTTTATTACAGGTCCCCTTTAGGG
AAACAGATGAGAGTGTCAGGAAGGGGGGGGTGCTTCACTCCCCCAGCCGG
ACATGGGCCCCGAAGCCGGTAATCCGGCTGCACCAGAATACAGTCAGACC
CGAACCAGACCAACAGGAACATAATTATATGTAAATGTTCGGCTGTGCGG
CAGCCTGTCCCAGGGGTCGACTTGATCCCCAGGGTGGTGACTGCCCACCT
TCTGTCCTGTGCAGTCGGTCTTCTGGCCCGGCTGCCTCTACAGTAGGAGC
ATGCACACTCCTACCGGACTCCCTCGTGTTCCTGTCGTCTAGTCCAAGGT
GCTCGAGAATACGCCTTACTTGGTCTTCTATGTTCGAGCTTTCCCCTTGG
TTGTACGTCGAATTGTCTTCTCCTCCGGCTCGACTGCCGCTGCTTCCTTC
CTGTGACATATTTTATGGAACTACCCGTAAAACACTAGTGTATTGGAAAT
TTCCTAGGCTCCTGTTGCCTATTGATGTCTGGAACAAACAAAGAGGATTG
TATACAACTTCTTTATTACAGGTCCCCTTTAGGGAAACAGATGAGAGTGT
CAGGAAGGGGGGGGTGCTTCACTCCCCCAGCCGGACATGGGCCCCGAAGC
CGGTAATCCGGCTGCACCAGAATACAGTCAGACCCGAACCAGACCAACAG
GAACATAATTATATGTAA
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