mRNA_H-paniculata_contig5479.12942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5479.12942.1
Unique NamemRNA_H-paniculata_contig5479.12942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5479.12942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5479contigH-paniculata_contig5479:3274..7331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size352
Cds size348
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5479.12942.1prot_H-paniculata_contig5479.12942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5479 3276..7331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.8189898-CDS-H-paniculata_contig5479:3275..33061622930568.8189898-CDS-H-paniculata_contig5479:3275..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 3276..3306 -
1691481352.2349787-CDS-H-paniculata_contig5479:3275..33061691481352.2349787-CDS-H-paniculata_contig5479:3275..3306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 3276..3306 -
1622930568.8319802-CDS-H-paniculata_contig5479:4208..43021622930568.8319802-CDS-H-paniculata_contig5479:4208..4302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 4209..4302 -
1691481352.2481189-CDS-H-paniculata_contig5479:4208..43021691481352.2481189-CDS-H-paniculata_contig5479:4208..4302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 4209..4302 -
1622930568.8450348-CDS-H-paniculata_contig5479:7108..73311622930568.8450348-CDS-H-paniculata_contig5479:7108..7331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 7109..7331 -
1691481352.2656784-CDS-H-paniculata_contig5479:7108..73311691481352.2656784-CDS-H-paniculata_contig5479:7108..7331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5479 7109..7331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5479.12942.1

>prot_H-paniculata_contig5479.12942.1 ID=prot_H-paniculata_contig5479.12942.1|Name=mRNA_H-paniculata_contig5479.12942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
GDLLISNTEKAKPPDTLNVDIMSSGEEDSRCIHADMPPLPSERHKPGSLK
RLLEKEGHDARNVVSWLVPNSTGGGGLVVDARTSAGARQRGERSSRETSR
ERDSSRRKSPMTSPFK
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mRNA from alignment at H-paniculata_contig5479:3274..7331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5479.12942.1 ID=mRNA_H-paniculata_contig5479.12942.1|Name=mRNA_H-paniculata_contig5479.12942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4058bp|location=Sequence derived from alignment at H-paniculata_contig5479:3274..7331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGATCTCCTCATCAGCAACACGGAGAAAGCGAAACCTCCAGACACTCT
AAATGTGGACATCATGAGCAGCGGCGAAGAAGACTCTAGGTGTATTCACG
CCGACATGCCCCCGTTACCGTCGGAACGACACAAACCCGGCTCCTTGAAG
CGGCTACTCGAGAAGGAGGGGCACGATGCGCGAAATGTTGTGTCCTGGCT
GGTGCCGAACAGCACCGGAGGAGGTGGGGGGGGGGGGAAGGGCGGGGGGG
GGGAGGGGGGGCGGGGGGGCTAATATTTTGCAGCTGACTTTAATCTACAG
TTGCGTGCATTTGTCAGCAAAATTGAATCAATAAGGGAGGGGATATCAAT
TTCTGTGCAACATATGGTAACATAACCGTAAAACAAAATGGACGTGTATG
CACAGTATGTTCAAGGTTCTGGGTGGGTCATTTATCCACAGGCTGACAAA
ATGAAAATGAGGGTAACTGCCCTCGATTATTTCCCCTTTTAAGGAATCTC
TAAGATGGCCACTGTAATACCCGCCCCTTTCTTCAAGGCTTACTTTGAAA
GTTTTGAGTCTAGGGGTAACCGGAACCCGACTGGCTCGCGGCGAGGCATT
ACGTTCTCTTTTCTTGACGTGACTTGTGACGTTGTTGCTTTCATCCCCCA
GTTGTAACTTATGTGTGAGGGGCTTAACTTTTTCTTTTTTGGTGTGTCGA
TACTAGGGTTCGAACGCGTGACCGTAAAGACGAGAAACAGATAAGATATT
TATCGGTATCGCCAACCATTGCGAAAATGTAGTGTTTCTAACGTGGCCAC
GACATGACCATTTATATTTATGATGTAAAAAAACTGTGATGAGCTCTGGC
CGTTACCGTTATTTGTCACAGAAAAACACTCTGGAGAAGAGATTGAAATA
CATGAATTGATGACGATAATGATGACTTTAGGGTATCGTTTGTAAAGTGT
TAACCGCGAAGGCTCGCCAGTTAGATGTAGTTAGACATACATAAAATTGT
TTTGCAAGAAGCATATCGCCAAGTTTGCACGATAGTAAAGATATTGCCAT
TTAATCCCGAGCACTCTAGATTTGCCATCCGTTTCCCACTTGTCACAATG
TAGAGAAGCCTGCCTCCTGCTGTGTCTACCTACCATCACGTGCAACAGCA
CGCCACACATGGGTGTAGAGCAGCTCCCGCCACTTCTCTCTCGGGGATGC
TGTCACTTGTCAACGCCTCGTCCTCTCTTTTTCGTTCTTGCTTTTTCCGC
GACCTCGGTAAGACAGAATGGAACACGGCGTTTTCAGTACCCCAATTGTA
CAATAGTTGTCTGTTTCTTCCACAGCTGTGCGTGAACGTTGTAGTCTATC
CTGCTCAATGCGTGTTGATCTTAGTTATGCCAGTTCTGATCGTGTGATTT
TATTGGAGAGCAAACACTCCGTCAGCATTCATTTTTGTGTGTAGAGATGG
CGAGGTGTGAGGTGCGTGCTGCATGACGTGTGGTGCTTGGCTACCATCGT
GATCATGGGGCCCCCTACATGTGTGCAGCAAACCCTGCACAACAAGTATA
CGCATTTGGGAATGTCCCAAACTGAAACTAGGTAAAACTGGAGGGAACTT
TCACCTACTAACTACTTCGGTCGTTCGAAGGGGTCTGGGGGAAATACGTG
TAATTTTATCTCGAGAAAAAAACCAGCTTTCCTACCTGGAATATATAAGG
GACAGAAGGACACACACGTCGTGTCCACTGCCGCGTCGATCCATGTGCGT
AAACTAACAAAGATAAGACAACAAAAACGGTTAGTGGTACCCCCTCGAGC
GCGACAGTTCACACAAGCTATACTAGATATAATGTACAAATTCGAGGGAG
CGTGTGTCGTCCTGTGATCGAAAACCTCGGCACAAACGGGGTCTGGTTTC
ACGGCCTTGAAAGTGTTGTGCTGTGCTTTGTGCTTATCTATTTATTTACC
TTGTCGGTTGTGGGCGCCATCGCCATACACAATAACTGCACTGCACTCTG
TTGAAATGTATTTCCAACTCTCTCTCACTGAATGAACCAATGCACTGCAA
TTAACTCAGCTGTATGTATGGTATGTACACCAAGACTGCGGACTACGCAC
GCTGTTACCCAATTTTTTGCCCTCTGATCCCCTCGTTCAACCATCTTCGC
CAACGAATGTTTTCGGGTTTTTTGTGTTCACTGTCGAAGGTAAATAGTCA
CACGTTGGAATACAGCTTGTATTGCACTGTTCTGATTGTACGTAGCGGAC
TGGCTTGCAGTCACAACAGAGGGTAATATTTATTCTGTACTCCTGTGATC
CGGACGGGGTCGTTTGAAGCTTGGCTAAACCAAGAGAGAGAGGGAGACGT
TGAGCAACTTATGCCTCCTAATCTTGAGTAACCCCCAAGATTGGTCGGCA
ATGAACTTGTCTCGGACCATACTGTGCTGTACTTTATTTACTCTGCACGT
TTCTGTATTATACGGTACTAGTTGGATTTGAGTTTCAACGGGTCATCACT
CCTCAGATGAAGGTCTATGAACGCCACCGAATATTTCCGATCATGACTAC
ACCAATACCAAGATGCTTGACGCATTCCAAATCTCGTTAGGATTGCTCGG
TAGATGGTAGCAGGTTCTTCACGTCTTTTCTTCGAATACTTGACTTTTTT
AGTATGACTGCATGCATCTCCACATATTTTTTCAATCCTTGAGGATGGTG
ATCAAGGTCGGGTAAAACTTGAAGTTGCTGTGAAGGCGTTTTCACTCGAA
AATAGAAGCCTTCAATCCGAGGTGTGGTGGATGTGTGCCGTTTTTGTCTT
CACTGTACTTGCATCGCATCAGTGTCTGTGTATGCTCGTACTTTCAGGGA
CGTTCATCACTGTCCTGTCAACTAACCCCAGCTGCCCTAACTCCTGCAAT
AACCCTCTACCGTACCAGGGCACAGTTTTGCGTCGCCTGAAATAGGCAGC
GTTCCGCTTGCCTGGTTCCCCAAATTGCGCGGTGAACCGACAATGCCGTG
ATACCTTCACCATGTCTCTTGAATGCCAGGGGGGTTAGTTGTGGATGCTC
GAACCAGCGCGGGAGCAAGACAGCGGGGCGAGCGCAGCAGTCGGGAGACA
TCGAGAGAGAGGGACAGCAGCCGGTAAACTAGATGACTTTATTTATCGGA
TTAAAGCGTGTGGGTGTGAGATTTCATTATTGTACGACTACTCTCGTCGA
CTTGTGGTTTTCATGCTGGCAGGTCAGCATTGAGAGGTCGAGTGACTAAA
ATTGTTTGTCAGAAGATGAGGCTCCAGAAGTAAGGTTTTCAAGACGTTAT
TGTTTATGCGTGGTGTGTCGTTTTACCGTCACAGAAGCTGTAGTCATTAT
CCATTGTCACGATCTAGCTGATTCTACGTTGAATATTTAATATACTGTCC
AGACATGTGACTTGCACGGACCAGTATCTGCCATCGTGCACGACTAGATG
CAAGTGTTCCCCGTCGTTTGCAACTTGTCTGGTGAGAAATACCATTTTGT
AGTAACCCGACGGCGAAATTCGTTTTAATTCGGAGGAGTGAAAGATTTTC
AAAATCAGTCATGATCCCAAGTACAGGTTCCGTAATTATAGTCGCCCACG
GGTTTCGATGGAATTGAAATATACTATTCCTCGAAGTGCAGGGGACCAAC
CGCTTGAAGCAAGCGCAGTGTCGATAATCGTGGGAGAATAGAAATGAAGA
TTTCAACTACTTCCGCCGTTTCGGATCTAATGTACAGTAGCTCTTGTGAG
GGAGCGGCAGTATTTTACCATGTGAAACATTTCGGGAGAAACTCGTGTAA
CTCATGCTCCACGATATCGCGAGGCGGGGAAGAAGCGGTATGTAGCAGCT
CCGAAGCTCTCGGTTTTTTCTATCTGCTGCGATTTGGACCGATCGAGATT
CGCCAGGAGAAATCTTGTATGCATGTGACTCCTTCCCGCCGTGGTTCTAC
CCCTAACAGCATCATACGTGCTGATTTTTTCTCAGCTATTTTCCTTTTGT
CGTCTGTGCACTCCTGCTACACAAGTCGAAAAAGTCCGATGACGAGCCCG
TTCAAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5479:3274..7331-

>mRNA_H-paniculata_contig5479.12942.1 ID=mRNA_H-paniculata_contig5479.12942.1|Name=mRNA_H-paniculata_contig5479.12942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig5479:3274..7331- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGATCTCCTCATCAGCAACACGGAGAAAGCGAAACCTCCAGACACTCT
AAATGTGGACATCATGAGCAGCGGCGAAGAAGACTCTAGGTGTATTCACG
CCGACATGCCCCCGTTACCGTCGGAACGACACAAACCCGGCTCCTTGAAG
CGGCTACTCGAGAAGGAGGGGCACGATGCGCGAAATGTTGTGTCCTGGCT
GGTGCCGAACAGCACCGGAGGAGGGCGATCTCCTCATCAGCAACACGGAG
AAAGCGAAACCTCCAGACACTCTAAATGTGGACATCATGAGCAGCGGCGA
AGAAGACTCTAGGTGTATTCACGCCGACATGCCCCCGTTACCGTCGGAAC
GACACAAACCCGGCTCCTTGAAGCGGCTACTCGAGAAGGAGGGGCACGAT
GCGCGAAATGTTGTGTCCTGGCTGGTGCCGAACAGCACCGGAGGAGGGGG
GTTAGTTGTGGATGCTCGAACCAGCGCGGGAGCAAGACAGCGGGGCGAGC
GCAGCAGTCGGGAGACATCGAGAGAGAGGGACAGCAGCCGGGGGGTTAGT
TGTGGATGCTCGAACCAGCGCGGGAGCAAGACAGCGGGGCGAGCGCAGCA
GTCGGGAGACATCGAGAGAGAGGGACAGCAGCCGTCGAAAAAGTCCGATG
ACGAGCCCGTTCAAGTCGAAAAAGTCCGATGACGAGCCCGTTCAAG
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