mRNA_H-paniculata_contig5467.12925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5467.12925.1
Unique NamemRNA_H-paniculata_contig5467.12925.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: D7FLF3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF3_ECTSI)

HSP 1 Score: 400 bits (1028), Expect = 3.020e-133
Identity = 221/374 (59.09%), Postives = 260/374 (69.52%), Query Frame = 1 
Query:  127 ILAGAPCLCGFLPPV-LHGGLDRCTPKKRSCLAVPTRQHHAAETRLYVGDKIFGIEDEPEAEENXXXXXXXXXXXXXXXXXXXXXXXGEEDLEGMVVKPRRKRXXYSXX------------------------SDDYFEREDSQRKLAQEVARKFPDIGQVVVDRYGKIIGGVNPFEGTDIKLEDQP-NQEEEEDFPEVAGVIAGMDDPSDAPWRLEAEEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGD 1170
            ++A  PC+ GFL P+  H    + T   R      TR   A  TRLYVG KIFG EDEP                            G+  L    VK  RK  X  XX                        SDD   RE  +++LA+E+ARKFPDIG+V VD++G I+GGVNPFEGTD+KLEDQP   ++E+DFPEVAGVIAGMDDP+DAPWRLEAE+I+R +V  CGLTCYDILWTFH+LEVTVTR  GDGP E+A YVDSDKLM+AI+GVNAALEAREEELFVLGRHEL+VATPGAKD+LTTDK+FKA+KGF+++V+ GGPFK KREL+GKLLERTFDEL I ++GR VRIPLALVDEVRL PA+VEAGD
Sbjct:   10 VVAACPCVPGFLLPLPTHDVGQQGTLFARCAATRSTRGREATATRLYVGGKIFG-EDEP-----------------------TPPPQGQPGLIKPAVKSNRKEEXXXXXXXXXXXXXXXXXXXXXXXXXKYDFSDDLAAREQDEKRLAEELARKFPDIGRVKVDKFGNIVGGVNPFEGTDVKLEDQPIPDDDEKDFPEVAGVIAGMDDPADAPWRLEAEKIVRDQVQACGLTCYDILWTFHRLEVTVTRAEGDGPIEEAAYVDSDKLMQAIKGVNAALEAREEELFVLGRHELVVATPGAKDVLTTDKQFKAYKGFEVIVKAGGPFKKKRELKGKLLERTFDELMIMKAGRKVRIPLALVDEVRLPPALVEAGD 359
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A836C944_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C944_9STRA)

HSP 1 Score: 279 bits (713), Expect = 9.140e-86
Identity = 148/237 (62.45%), Postives = 176/237 (74.26%), Query Frame = 1 
Query:  466 EREDSQRKLAQEVARKFPDIGQVVVDRYGKIIGGVNPFEGTDIKLE-DQPNQEEEED-FPEVAGVIAGMDDPSDAPWRLEAEEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGD 1170
            E E  ++ +A EV +++PD   V+VD  G +IGGV+P+   +  LE  +PN   + D +PEVAG   GMDDP DAPWR EAEEIIR+EV   GL CYDI+W+FHKLEVTVTRG      E+AGYVDSD LM+AIR VN ALE  EE L+VLGRHELI+ATPGAKDILTTD+EFKAFKGFD+VV TG     +RE+ GKL ERTFDEL + Q GR VRIPLALVDEVRL  A +E G+
Sbjct:  133 EEELEEQAVAVEVLQQYPDAPIVLVDDMGNVIGGVDPYADEENGLERGEPNVVGQNDEWPEVAGDTGGMDDPPDAPWRREAEEIIRREVEETGLNCYDIMWSFHKLEVTVTRGDLPEDSEEAGYVDSDALMKAIRAVNQALEQEEERLWVLGRHELIIATPGAKDILTTDREFKAFKGFDVVVLTGSTLNVQREVMGKLHERTFDELVLMQKGRKVRIPLALVDEVRLPDAKMEPGE 369
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A4D9D4Q5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4Q5_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.500e-37
Identity = 83/197 (42.13%), Postives = 110/197 (55.84%), Query Frame = 1 
Query:  607 QPNQEEEEDFPEVAGVIAGMDDPSDAPWRLEAEEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPDE------DAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQ---GKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGD 1170
            Q N+ + ++ PE  G   GMDDP DAPWRL+AEE+IR  VT  G   YD+ W  H + V +TR  G   +       DAG + SD+++E  R V  AL   +  L VL R  L V TPGAKD+LTT++EF+AF+G+++ V    P           G+LLER      +   G+ V IP  +V EVRL  AM EA D
Sbjct:  108 QENEPDWDNIPEYGGEFLGMDDPLDAPWRLQAEEVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDGGNVESEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRVLQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADD 304
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: W7TJE5_9STRA (Ribosome maturation factor rimp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJE5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.320e-34
Identity = 82/197 (41.62%), Postives = 110/197 (55.84%), Query Frame = 1 
Query:  607 QPNQEEEEDFPEVAGVIAGMDDPSDAPWRLEAEEIIRQEVTRCGLTCYDILWTFHKLEVTVTR---GTGDGPDE---DAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQ---GKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGD 1170
            Q N+ + ++ PE  G   GMDDP DAPWRL AE++IR  VT  G   YD+ W  H + V +TR   G  +   E   DAG + SD+++E  R V  AL   +  L +L R  L V TPGAKD+LTT++EF+AF+G+++ V    P           G+LLER      +   G+ V IP  +V EVRL  AM EA D
Sbjct:  218 QENEPDWDNIPEYGGEFLGMDDPLDAPWRLHAEDVIRGAVTEAGYHTYDVTWHLHHVNVDITRQDVGNVENEGEGVADAGSLSSDEIVEVTRAVEEALLPHDNHLRILQRFHLCVGTPGAKDVLTTEREFQAFRGYEVQVSVTNPINESPTPNVRVGRLLERNPMHTILNVKGKNVTIPTGMVVEVRLPSAMHEADD 414
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S2SW06_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW06_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.200e-31
Identity = 83/182 (45.60%), Postives = 112/182 (61.54%), Query Frame = 1 
Query:  643 VAGVIAGMDDPSDAPWRLEAEEIIRQEVTR-CGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFK-NKRE-LQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGDVYP 1179
            V G++ G+DDP D  WRL+AEE++R  V    G+  YD+ W    L+V + + T +G     G VD   +  A R +  ALEA +EEL +L RHEL V++ GAK+IL +++EF+AFKGFD+VV+T  P   +KRE L GKL+ R   E  I   GR VRIP  LV+EVRL  A  E  +  P
Sbjct:  122 VYGIMNGLDDPRDVFWRLKAEELVRGAVRPLAGVRIYDVCWNIATLQVLLEQETDEG-----GAVDLKVVETAHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEEPVENLP 298
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S2PI76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PI76_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.270e-25
Identity = 75/210 (35.71%), Postives = 104/210 (49.52%), Query Frame = 1 
Query:  568 VNPFEGTDIKLEDQ-PNQEEEEDFPEVAGVIAGMDDPSDAPWRLEAEEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPD--------------------EDAGYVDSDKLMEAIRGV------NAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQGKLLERTFDELKITQSGRTVRIP 1116
            ++P +  ++K ++Q PN       P   G   G DDP DAPWR+E E+IIR      G    D+ W      VT++  TG   D                    E    V  D +  +  GV       A  EA + +L VL RHE+IV +PG  ++L T ++F AFKGFD++V+T  P  + R L+GKLLERT  +  ITQ G+ V IP
Sbjct:   18 IDPEDVEELKYKEQAPNPA----VPWRRGDPDGCDDPMDAPWRIEGEQIIRDAAESVGAVVEDVTWGMAMCTVTISDTTGVKKDTSEYLEERKKRDDEYPWMREERDAVVTEDAVDMSGVGVVAGTIIEALQEAEDRDLDVLSRHEIIVTSPGVSNVLETQRQFDAFKGFDVIVQTIDPLGSNRRLEGKLLERTALDTFITQKGKKVTIP 223
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S1TZY1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.880e-24
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = 1 
Query:  649 GVIAGMDDPSDAPWRLEA----EEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAI-RGVNAALEAREEEL---FVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNK-------RELQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGD 1170
            G   GMDDP DAPWRLEA    EE+++++         D+LW F  +++TVT      P EDA    S  ++E + R ++  L   E EL     L  H L V TPGA +++TT ++F+A+KGF + V T G  K+        + L G L  RT +E+ + Q GR V++P+A+V EVRL    +E GD
Sbjct:   96 GPALGMDDPLDAPWRLEAAAEIEELVKEKYP--DAQAVDVLWAFSNVQITVT------PKEDANVPLSSAVIEMLTRAISDDLFPAEPELAHDHWLTMHALSVCTPGASNVITTQEQFEAYKGFQVDVVTLGMPKSDGFAGVPGKTLTGTLHGRTTEEVHLNQKGRIVKVPIAMVSEVRLPEPELENGD 276
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S2SV25_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV25_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.090e-24
Identity = 71/162 (43.83%), Postives = 97/162 (59.88%), Query Frame = 1 
Query:  703 EEIIRQEVTR-CGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFK-NKRE-LQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAGDVYP 1179
            +E++R  V    G+  YD+ W    L+V + + T +G     G VD   +  A R +  ALEA +EEL +L RHEL V++ GAK+IL +++EF+AFKGFD+VV+T  P   +KRE L GKL+ R   E  I   GR VRIP  LV+EVRL  A  E  +  P
Sbjct:   12 QELVRGAVRPLAGVRIYDVCWNIATLQVLLEQETDEG-----GAVDLKVVETAHRAILDALEAHDEELQILTRHELEVSSKGAKNILDSEREFEAFKGFDVVVKTLAPDGIDKREPLYGKLVGRDVHETTINIRGRPVRIPNHLVEEVRLPEANEEPVENLP 168
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S2D135_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D135_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.770e-22
Identity = 58/167 (34.73%), Postives = 95/167 (56.89%), Query Frame = 1 
Query:  649 GVIAGMDDPSDAPWRLEAEEIIRQEVTRC-GLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRE-LQGKLLERTFDELKITQSGRTVRIPLALVDEVRL 1143
            G + G+DDP D  WR+  +++IR+ +    G++ YDI W    L V +         E++G V  + +++  + +   LE  ++EL +L RH L V++ G  D+LT +++F  FKGF++ V T   F ++R  + G+L+ R   E  I Q GR V+IP   V+EVRL
Sbjct:  114 GDMNGLDDPRDVEWRIRGQDLIREAIAPLNGISVYDITWNIGDLTVFIEN-------EESG-VSMEDIIDCTKAIQDTLEPFDDELEILSRHTLEVSSKGIDDVLTAERQFITFKGFEVAVSTISTFSDRRAPILGRLVGRDVHETTINQKGRMVKIPNFYVEEVRL 272
[Close]
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Match: A0A7S1DE94_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE94_CYCTE)

HSP 1 Score: 102 bits (254), Expect = 3.710e-22
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:  817 EDAGYVDSDKLMEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFDIVVRTGGPFKNKRELQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSPAMVEAG 1167
            + A  VD+ K+    + +   L+++E  L +L RHELI+ATPGA D L T ++F A++GFD++V T  PF + R L GKL+ER   +L I + GR V IPL  V  VRL PA  E G
Sbjct:   13 DGAMVVDTSKISVIAKYILKGLDSQEHRLRILDRHELILATPGAPDTLETQRQFDAYRGFDVIVETVDPFNSNRVLTGKLVERNSMDLIIRKKGRMVTIPLNFVSSVRLPPAKREKG 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5467.12925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF3_ECTSI3.020e-13359.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C944_9STRA9.140e-8662.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D4Q5_9STRA5.500e-3742.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TJE5_9STRA1.320e-3441.62Ribosome maturation factor rimp n=1 Tax=Nannochlor... [more]
A0A7S2SW06_9STRA1.200e-3145.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PI76_9STRA2.270e-2535.71Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1TZY1_9STRA1.880e-2438.62Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SV25_9STRA7.090e-2443.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2D135_9STRA2.770e-2234.73Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1DE94_CYCTE3.710e-2245.30Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5467contigH-paniculata_contig5467:7902..13199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.7
Seed ortholog evalue9.2e-110
Seed eggNOG ortholog2880.D7FLF3
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E9GY@1,2SFUT@2759
Ec32 ortholog descriptionRibosome maturation factor RimP, C-terminal
Ec32 orthologEc-12_007950.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1602
Cds size1083
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5467.12925.1prot_H-paniculata_contig5467.12925.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5467 8001..12779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930566.6309695-UTR-H-paniculata_contig5467:7901..80001622930566.6309695-UTR-H-paniculata_contig5467:7901..8000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5467 7902..8000 +
1691481351.2746634-UTR-H-paniculata_contig5467:7901..80001691481351.2746634-UTR-H-paniculata_contig5467:7901..8000Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5467 7902..8000 +
1622930566.8950107-UTR-H-paniculata_contig5467:12779..131991622930566.8950107-UTR-H-paniculata_contig5467:12779..13199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5467 12780..13199 +
1691481351.3733616-UTR-H-paniculata_contig5467:12779..131991691481351.3733616-UTR-H-paniculata_contig5467:12779..13199Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5467 12780..13199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930566.6441314-CDS-H-paniculata_contig5467:8000..81101622930566.6441314-CDS-H-paniculata_contig5467:8000..8110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8001..8110 +
1691481351.285237-CDS-H-paniculata_contig5467:8000..81101691481351.285237-CDS-H-paniculata_contig5467:8000..8110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8001..8110 +
1622930566.656922-CDS-H-paniculata_contig5467:8236..83451622930566.656922-CDS-H-paniculata_contig5467:8236..8345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8237..8345 +
1691481351.293761-CDS-H-paniculata_contig5467:8236..83451691481351.293761-CDS-H-paniculata_contig5467:8236..8345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8237..8345 +
1622930566.6717849-CDS-H-paniculata_contig5467:8851..90341622930566.6717849-CDS-H-paniculata_contig5467:8851..9034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8852..9034 +
1691481351.3025746-CDS-H-paniculata_contig5467:8851..90341691481351.3025746-CDS-H-paniculata_contig5467:8851..9034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 8852..9034 +
1622930566.6852102-CDS-H-paniculata_contig5467:9903..100321622930566.6852102-CDS-H-paniculata_contig5467:9903..10032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 9904..10032 +
1691481351.3136482-CDS-H-paniculata_contig5467:9903..100321691481351.3136482-CDS-H-paniculata_contig5467:9903..10032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 9904..10032 +
1622930566.7023745-CDS-H-paniculata_contig5467:10766..108351622930566.7023745-CDS-H-paniculata_contig5467:10766..10835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 10767..10835 +
1691481351.33323-CDS-H-paniculata_contig5467:10766..108351691481351.33323-CDS-H-paniculata_contig5467:10766..10835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 10767..10835 +
1622930566.7155395-CDS-H-paniculata_contig5467:11160..113241622930566.7155395-CDS-H-paniculata_contig5467:11160..11324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 11161..11324 +
1691481351.3475118-CDS-H-paniculata_contig5467:11160..113241691481351.3475118-CDS-H-paniculata_contig5467:11160..11324Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 11161..11324 +
1622930566.7298732-CDS-H-paniculata_contig5467:12296..124461622930566.7298732-CDS-H-paniculata_contig5467:12296..12446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 12297..12446 +
1691481351.3554227-CDS-H-paniculata_contig5467:12296..124461691481351.3554227-CDS-H-paniculata_contig5467:12296..12446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 12297..12446 +
1622930566.883533-CDS-H-paniculata_contig5467:12610..127791622930566.883533-CDS-H-paniculata_contig5467:12610..12779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 12611..12779 +
1691481351.3638961-CDS-H-paniculata_contig5467:12610..127791691481351.3638961-CDS-H-paniculata_contig5467:12610..12779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5467 12611..12779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5467.12925.1

>prot_H-paniculata_contig5467.12925.1 ID=prot_H-paniculata_contig5467.12925.1|Name=mRNA_H-paniculata_contig5467.12925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp
MFYMLKVVVILAGAPCLCGFLPPVLHGGLDRCTPKKRSCLAVPTRQHHAA
ETRLYVGDKIFGIEDEPEAEENEEEETEATVGEEEDDGEGDEDEDGEEDL
EGMVVKPRRKRRKYSSSSDDYFEREDSQRKLAQEVARKFPDIGQVVVDRY
GKIIGGVNPFEGTDIKLEDQPNQEEEEDFPEVAGVIAGMDDPSDAPWRLE
AEEIIRQEVTRCGLTCYDILWTFHKLEVTVTRGTGDGPDEDAGYVDSDKL
MEAIRGVNAALEAREEELFVLGRHELIVATPGAKDILTTDKEFKAFKGFD
IVVRTGGPFKNKRELQGKLLERTFDELKITQSGRTVRIPLALVDEVRLSP
AMVEAGDVYP*
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mRNA from alignment at H-paniculata_contig5467:7902..13199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5467.12925.1 ID=mRNA_H-paniculata_contig5467.12925.1|Name=mRNA_H-paniculata_contig5467.12925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5298bp|location=Sequence derived from alignment at H-paniculata_contig5467:7902..13199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTTGTGCGGGTCTGAGCGACCAGATTGGTATTTAGAGTAAAAAGCAAAA
CAGTGGCCATCAACTGTGCCGTGTTCATGTATTCTTAGCCCGTCTAGCCA
TGTTCTACATGTTGAAGGTTGTAGTTATACTGGCGGGCGCGCCGTGTCTT
TGTGGCTTCCTACCACCCGTCCTGCATGGCGGCTTGGATCGATGCACACC
GAAAAAAAGGTACGAATAGTCTGTCTGATTATCGTTAAAGAGTTTGTGTC
ACATGCTGTCTGTCACATAGAAATAGTTAAGTCAGCAACAACCTGGGGTT
GAGAGCAACTTGTGTTTTTGTACTCCCTTCGACAGATCCTGTTTGGCAGT
CCCAACCCGTCAACATCATGCAGCAGAAACACGGCTGTATGTCGGCGACA
AGATATTCGGTATTGAAGACGAGCCAGAAGCAGAGGAGAACGAAGTGAGT
AATTATCGCTGGCACGGTGAATTATTGTACGATCACAGATAGCAGTAGAC
ACCAACTGGACCGGCCGGCTTCATCCAACACAGCAGATGGAGTTTGTGCG
GTCCAGTGCACAATAGCACCGATTAGGTGTACTGTATGTACTATGTGTAA
AATAGACAACTCTAGTGAGTTCTGTACTGCACCAGTATACCAGGTGTTCC
CAGTTGAACTTTTATCTGTGCCTTGGAGTAGATGCTCGCGTACTGTTACT
GGACATATTATTTTCCGAGCTTGTGAAGCGCAAAATCAAAATTGTAAGCG
TAACATTCAGAGTTATATGATGCTGTGCGTGTTATATAGGTTATTTCTGT
AGTATTGCCCAGAGTAGGAAACTTCGGGTACACATGAAAAAAAATGTCAA
GGGACATCTTGGGACAGTAACATACACGTGTCGCAACTAGAATAGTCCTT
GGTGGGTGGGAAGTTAATGCTCCACGCCCCTGGCATCGTTGGGTTGACAG
GAAGAAGAAACCGAAGCAACCGTAGGAGAGGAAGAGGACGATGGAGAGGG
CGATGAAGATGAAGATGGAGAAGAGGACTTGGAGGGCATGGTAGTCAAGC
CGAGGAGAAAGCGCCGAAAATACAGCTCCTCCTCCGACGACTACTTCGAG
CGGGAGGATTCACAAAGAAAATTAGCGCAAGAGGTGCGCAAGTACGTCTC
TCATCTTATATTATTCTCCGTGGACCAGCTTCCTTCTTGACACTCTCATT
GGTTGAGTATTATTCAAAACGGAGTGCACGACTCTAGTTATTATGTCCGT
TCTCAGAGACTATATGCCTACCCCATGGACGTACCTTAATTAACCCTTGA
ACCACTAGACCGTGTCTTGCGGAGCGATCAAAATGGTTAGTTTCTGGAAC
ATGAAGAAGCTTTGTCACTGGTCAAAGATTCCTCTGAACAAACACAGGGT
TTCTTCTTTTGTGAAGAGAAGCAGCTTCACCCCCATTTCTTTCAAGTCCT
CATAATGAGGACCTTTGAAAAATGCGGTGGAATGGCATGTGTCCACATGA
GGCGCGAACGGGCTGCTTGAAAATATGCACCGGAGAAAAATTATGGGCAG
AAATGACAACGCCTGCATAGATGGTAGTGACCAGCCCTGCTGGCAACTAT
ACATGAAGTCTTATTCTTCCCGTTGCGCTACCATCAGATGAAGGAAGACC
CACAAGGTTGCCACATGAGCTACTAACCCTAAAAGTCAAACGAAGACTCA
TGCTCGCCTTCTGACCTCACTTCCGCCTGGGAAACGCGTACTTCCTGTGG
AAAATGTATCGGATCCGTTCTTAAATGGGTGGGAGTACCAAATGGAAAAC
ACAAACTAAGGTCTGCTAATCGCATCAACAAGAGAGCATTTCACGGTCTG
TGATGAAGCGGAGAATACTATCTTTGTAGGGGTATATGGCGATACGTAAT
GTGGCATGCGCTTGAAGCTTGAACTCTGGAGAGCCAGGAAAATCGTGCTG
TCTATAGCAAGCACAACGGTCCTCATAACTTTCATGCCCAAACGCTGTTC
AGGTCGCAAGGAAGTTCCCGGACATTGGGCAGGTGGTTGTAGATCGCTAT
GGCAAGATCATTGGGGGGGTTAATCCATTCGAGGGCACCGATATCAAGCT
GGAGGACCAGCCTAACCAGGAGGAAGAAGAGGTTAGTGAACTTGCTGCCA
CAAGGATGACCTTGATTAATTGATGATTCTCAAATCGATAACGTATCGTG
CATGACCTGTTGAGAAGCTCAATTAACGTCATTGTTCGGCACTATAGTGT
GCCCGGACACTGTCGAAAGCTACGCAACACACAGTACAAGGTGAATTTTC
GAAATATCGTCAGATTTATGGGAGCTGCCTATACCGCAATATGGAGCATG
AGCACCCAGTTGTTGATCAGGGTCGAGTTAGTCTACAAGGACTCGCTGGC
GTACATGAATACATGAGTGGGTCGCCAATTCGACACTGGAGTATTAGCTA
AGTGCGATTGACTTTTCCTAATCAATGACTGCAAGTGCTTGCACTTTCGT
TTTAGCAGTCAAACGGAGCACCTGTATGGGTTTTGCGTACTCGCGGCGGC
GGGCCAGATGGGAATGGCCCCAAGAAAATTGGCGCTTTCCAAACCCCGTG
TGAATCGATAGATGAGTTGATGCATAGATAAATAGAGAAATGGATGAACA
ACAGTAGGTCCTTCACATGTTCGGAAAGTGTACTATTTTCAAGTGCGGTC
CCATCTCCGCAGATTTTTGTACTTTAGAGCATGAAGGCTAGCTTAATGTG
AAGATGAATGTGCTATGAAAAGGCGTTTTTAGTAATAATTAAAAATCCCC
ATCCGAGGTGTAATGTCTTATTTTCTCTGGCAATTACTCTTCTCGTGGAT
ATTTCAACTTACCAGGACTTTCCAGAGGTTGCTGGGGTAATTGCAGGCAT
GGACGACCCGTCCGACGCTCCGTGGAGACTCGAGGTGAGTCACTACGGAA
TAGAGTGCCATGTGCATGTTGTTCATCGAGTGATTATAGCCTAGTCTGCC
TAGGTGGCTGTTGTGCGTCGAGTGTTTGTCTGCTGTCGGCTTCGTTCCTA
TATAGTTTTAGTTTGTACTATATTGTGGCGTCAGTACACTGCTTATGTTT
GCTGTCATGTGTAAAATTGAGCATGCGTTTGTACGAAGTGTATAAAGGTA
CGTCGGCGTGTCGGTGTGATGCTGTTTAATATTATGTATCGGGAGATAGA
CGTGATCGATCCGAAACCTTTGTCGTTTAACGTTGTCTTGCATTCTTCGA
CGTGTTTAGGCGGAGGAAATAATCCGACAAGAAGTGACCAGGTGTGGGCT
CACATGCTATGATATTTTGTGGACATTCCACAAATTGGAGGTGACGGTGA
CGAGAGGAACAGGCGATGGGCCCGATGAAGATGCAGGATACGTGGACAGC
GACAAGCTCATGGAGGCCATCAGGTGGGATGGTTGTGACTTGTAGTGTAG
GAGCAGCCGTACCGATCGCGTGAGGCGGATGGGTGCTGAACCTGAGCGGG
AATCTTACACGCGATTACCACGAAACGAAGTGCTGTCGAAAGTGTTCAAG
TTTAGGACGTATTGCAAACTATAATTTCACCATTCCATTCGAAAAATCAG
TCTAGACTTTTTGTAGCATCAATAGTCATTAGTCCCAAACTACCGAGCAC
GTTTTCAGCCAGTGTTGGCTGTTGGCGCGGTAGCTGGTTACCGATAACGG
CGCCGTTCCGTGTGCATATACATACTTCATCCATTTATCTTCTCAAATTT
GTCCTTTTGTTGCCCTTTCCTTCCACGAGTAGCATCGTGCATTTGCGAAG
CTAGGTATCCACGGCCAGTCACGACACCGTCAGCTCATTCAGGCAGGAGC
AGTTGACTATCAGCTCGGTTTTAGCATGTCCTGGGGCACGTGCCGTGCGT
ACATTTCAGTACTGGGAACATTCCCTCGGACGTATTGTGACGACGTCTGG
AGGATATTGCAAGTTGTCACCTGGTAGTCTGCCGAAGCTCACCCCGTTGC
AGCGAGGAGATATGGAGATTATGGTGTTCTCTTGTTTGGTTGGGAGGGGT
CGTGTAGACGGTAATTCAACGACCTTGTTCATTCCATCCTATGAAATAGA
GAGGTTGTCAGTTTCCCGGCACTATCCCATGGTTACGATTTTAGGTTGAT
TATTTAAAGTTCATGTCACCAGGATAGCTCCTATCACAACCACCTGTCCC
TGCATTACCCAGCCAGCTTATCATCGTCACTACAAGTTCTTAAGAGAGCT
ATTCTCATGCCATTGTACACCAAGCGTGAGTGAGAACTAGTGAGCGGGCA
CGCGGAACTTCTTTTCAACAAGTGAAGAGTTCACTATAAAGCCCACCATA
ATGGCGTTGCATTGGCCGCCCCTTGAATGTGATGTTTCCGCGCAGAGGGG
TCAACGCTGCCTTGGAAGCGAGGGAAGAAGAACTATTCGTGCTCGGACGG
CACGAACTTATTGTTGCCACGCCTGGTGCTAAAGACATCCTGACGACGGA
CAAAGAGTTCAAGGCCTTCAAAGGTTTCGATATTGTCGTCAGAACGTGAG
AACCCCTGTCCATTCGTTCTGTAGAAGTCGTTTGTTCGTTCGATGTTCAA
CGCGTCCAATGTGAGGATAGCTTGTTGACTGAAAACCTGGTATTATTGCC
GTGTCCTTACATCTACTTGCACTTTGTGCCAACCTCACGTCATTTTATTC
TGCTCGCAGGGGAGGACCTTTCAAAAACAAGCGCGAGCTCCAGGGCAAGC
TCCTTGAGCGCACGTTTGACGAACTCAAGATCACACAGTCAGGGCGAACT
GTACGCATTCCGTTGGCGCTTGTAGATGAGGTTCGGCTTTCCCCGGCCAT
GGTAGAGGCTGGTGATGTATACCCCTGAACGCACCAGCCGAGGCACAAAA
ATGTGCGCAATATAACGTTCAGACCAAATGCATGAAGGATGTTAACGGTT
ACTTACTGTACCTTCTAAAATATCCGACTAGGCCCAAAAGCAACAGTGAA
GTGCTGTGCAACTTCCTGCTCTCTTTGCAGGCAACACGACTCAACGTATT
TCGTAATGGCTTGCCAATTAATTTTGGTATCTCTAGTATTAACGTACTCG
TACCTTGATTCCGACACAAGGTACACCAGCGGTTATATCGCCTTGTCTGC
GGAGTTGAATTGTTCAGCTTGCCTCTTTTTTTAGATACTAAACACCTTGT
CAGGTATCGATGCCCGAGACCACGGCGTGTGCCCTGTGTCAAGTGGAGAG
GTTTATATTTGATTATGCGGATTGGCTGCAAGTCGAACACCTTGTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5467:7902..13199+

>mRNA_H-paniculata_contig5467.12925.1 ID=mRNA_H-paniculata_contig5467.12925.1|Name=mRNA_H-paniculata_contig5467.12925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig5467:7902..13199+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTACATGTTGAAGGTTGTAGTTATACTGGCGGGCGCGCCGTGTCT
TTGTGGCTTCCTACCACCCGTCCTGCATGGCGGCTTGGATCGATGCACAC
CGAAAAAAAGATGTTCTACATGTTGAAGGTTGTAGTTATACTGGCGGGCG
CGCCGTGTCTTTGTGGCTTCCTACCACCCGTCCTGCATGGCGGCTTGGAT
CGATGCACACCGAAAAAAAGATCCTGTTTGGCAGTCCCAACCCGTCAACA
TCATGCAGCAGAAACACGGCTGTATGTCGGCGACAAGATATTCGGTATTG
AAGACGAGCCAGAAGCAGAGGAGAACGAAATCCTGTTTGGCAGTCCCAAC
CCGTCAACATCATGCAGCAGAAACACGGCTGTATGTCGGCGACAAGATAT
TCGGTATTGAAGACGAGCCAGAAGCAGAGGAGAACGAAGAAGAAGAAACC
GAAGCAACCGTAGGAGAGGAAGAGGACGATGGAGAGGGCGATGAAGATGA
AGATGGAGAAGAGGACTTGGAGGGCATGGTAGTCAAGCCGAGGAGAAAGC
GCCGAAAATACAGCTCCTCCTCCGACGACTACTTCGAGCGGGAGGATTCA
CAAAGAAAATTAGCGCAAGAGGAAGAAGAAACCGAAGCAACCGTAGGAGA
GGAAGAGGACGATGGAGAGGGCGATGAAGATGAAGATGGAGAAGAGGACT
TGGAGGGCATGGTAGTCAAGCCGAGGAGAAAGCGCCGAAAATACAGCTCC
TCCTCCGACGACTACTTCGAGCGGGAGGATTCACAAAGAAAATTAGCGCA
AGAGGTCGCAAGGAAGTTCCCGGACATTGGGCAGGTGGTTGTAGATCGCT
ATGGCAAGATCATTGGGGGGGTTAATCCATTCGAGGGCACCGATATCAAG
CTGGAGGACCAGCCTAACCAGGAGGAAGAAGAGGTCGCAAGGAAGTTCCC
GGACATTGGGCAGGTGGTTGTAGATCGCTATGGCAAGATCATTGGGGGGG
TTAATCCATTCGAGGGCACCGATATCAAGCTGGAGGACCAGCCTAACCAG
GAGGAAGAAGAGGACTTTCCAGAGGTTGCTGGGGTAATTGCAGGCATGGA
CGACCCGTCCGACGCTCCGTGGAGACTCGAGGACTTTCCAGAGGTTGCTG
GGGTAATTGCAGGCATGGACGACCCGTCCGACGCTCCGTGGAGACTCGAG
GCGGAGGAAATAATCCGACAAGAAGTGACCAGGTGTGGGCTCACATGCTA
TGATATTTTGTGGACATTCCACAAATTGGAGGTGACGGTGACGAGAGGAA
CAGGCGATGGGCCCGATGAAGATGCAGGATACGTGGACAGCGACAAGCTC
ATGGAGGCCATCAGGCGGAGGAAATAATCCGACAAGAAGTGACCAGGTGT
GGGCTCACATGCTATGATATTTTGTGGACATTCCACAAATTGGAGGTGAC
GGTGACGAGAGGAACAGGCGATGGGCCCGATGAAGATGCAGGATACGTGG
ACAGCGACAAGCTCATGGAGGCCATCAGAGGGGTCAACGCTGCCTTGGAA
GCGAGGGAAGAAGAACTATTCGTGCTCGGACGGCACGAACTTATTGTTGC
CACGCCTGGTGCTAAAGACATCCTGACGACGGACAAAGAGTTCAAGGCCT
TCAAAGGTTTCGATATTGTCGTCAGAACAGGGGTCAACGCTGCCTTGGAA
GCGAGGGAAGAAGAACTATTCGTGCTCGGACGGCACGAACTTATTGTTGC
CACGCCTGGTGCTAAAGACATCCTGACGACGGACAAAGAGTTCAAGGCCT
TCAAAGGTTTCGATATTGTCGTCAGAACGGGAGGACCTTTCAAAAACAAG
CGCGAGCTCCAGGGCAAGCTCCTTGAGCGCACGTTTGACGAACTCAAGAT
CACACAGTCAGGGCGAACTGTACGCATTCCGTTGGCGCTTGTAGATGAGG
TTCGGCTTTCCCCGGCCATGGTAGAGGCTGGTGATGTATACCCCTGAGGG
AGGACCTTTCAAAAACAAGCGCGAGCTCCAGGGCAAGCTCCTTGAGCGCA
CGTTTGACGAACTCAAGATCACACAGTCAGGGCGAACTGTACGCATTCCG
TTGGCGCTTGTAGATGAGGTTCGGCTTTCCCCGGCCATGGTAGAGGCTGG
TGATGTATACCCCTGA
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