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Homology
BLAST of mRNA_H-paniculata_contig5467.12924.1 vs. uniprot
Match: D7FLF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLF4_ECTSI) HSP 1 Score: 171 bits (434), Expect = 6.700e-46 Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 2
Query: 272 IPGNLLPTCATSGGHQHENEKHQPDDVGYDASYNVDRRNMVQAIADLYQAELKRQEEMSLEDAIRSDNGPKEISIYCHQAPEVKIVDLAQDHRGNNECLILHVNAPDVSSKLMLKCDGSVSGSDFGWGENW 664
IPG CA++ G E YD+ Y+V RRNM++AIADLY+ E++RQE+MS+EDAI DNGPKEISI+ H+ PEVKIVDLAQDHR NN+CL+L++N+PDVSSK++LKCDGS+SG DFGWGE+W
Sbjct: 36 IPGEKPFGCASTAGQTSGKEGE------YDSGYDVSRRNMIKAIADLYKEEMRRQEDMSMEDAILCDNGPKEISIFFHENPEVKIVDLAQDHRNNNDCLVLNINSPDVSSKVVLKCDGSISGDDFGWGEDW 160
BLAST of mRNA_H-paniculata_contig5467.12924.1 vs. uniprot
Match: A0A7S1CH73_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH73_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.930e-16 Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 374 VDRRNMVQAIADLYQAELKRQEEMSLEDAIRSDNGPKEISIYCHQAPEVKIVDLAQDHRGNNECLILHVNAPDVSSKLMLKCDGSVSGSD 643
+ R+M +A+ LY+ E RQ + DA +DNGPKEIS++C + ++ I DL D R NNEC++L++N P VSS+L+L CDG+ S D
Sbjct: 96 AETRDMPEAVRKLYEREKARQRRIQHSDADSADNGPKEISMFCPKDMQIAIADLNDDERDNNECMVLNLNGPGVSSRLVLFCDGTHSDFD 185
BLAST of mRNA_H-paniculata_contig5467.12924.1 vs. uniprot
Match: A0A7S2R3B7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3B7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 6.430e-13 Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = 2
Query: 389 MVQAIADLYQAELKRQEEMSLEDAIRSDNGPKEISIYCHQAPEVKIVDLAQDHRGNNECLILHVNAPDVSSKLMLKCDGSVS 634
M + I D+++ E RQE++ + A+ D GPKEISI+C QAP+VKI DL + NEC +L +N+P++ S+L + C+G +
Sbjct: 28 MRRRIDDMFEEERLRQEQVDPDLAMEEDLGPKEISIFCPQAPDVKISDLPRHAVEENECFVLQINSPELHSRLSINCNGEFT 109
BLAST of mRNA_H-paniculata_contig5467.12924.1 vs. uniprot
Match: UPI000711E855 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E855) HSP 1 Score: 73.9 bits (180), Expect = 3.930e-12 Identity = 31/71 (43.66%), Postives = 53/71 (74.65%), Query Frame = 2
Query: 422 ELKRQEEMSLEDAIRSDNGPKEISIYCHQAPEVKIVDLAQDHRGNNECLILHVNAPDVSSKLMLKCDGSVS 634
E +RQ+++ E+A ++NGPK+IS++C P+V+IVDL ++ G N CL L + +P++ ++L+L CDGSV+
Sbjct: 43 EYERQKQLMTEEAEEANNGPKDISLFCSSNPQVRIVDLDKNLIGKNICLQLQIGSPELQTRLLLYCDGSVN 113
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Model size | 2572 |
| Cds size | 486 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5467.12924.1 >prot_H-paniculata_contig5467.12924.1 ID=prot_H-paniculata_contig5467.12924.1|Name=mRNA_H-paniculata_contig5467.12924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MKNGVKWRPARSVSRNFTLASVAAVAVAFGIPGNLLPTCATSGGHQHENE
KHQPDDVGYDASYNVDRRNMVQAIADLYQAELKRQEEMSLEDAIRSDNGP
KEISIYCHQAPEVKIVDLAQDHRGNNECLILHVNAPDVSSKLMLKCDGSV
SGSDFGWGENW* back to topmRNA from alignment at H-paniculata_contig5467:598..6537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5467.12924.1 ID=mRNA_H-paniculata_contig5467.12924.1|Name=mRNA_H-paniculata_contig5467.12924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5940bp|location=Sequence derived from alignment at H-paniculata_contig5467:598..6537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAACCGTCATAGATACACCAGAGATAATTCGTGGTGGATCGATGTTAA
CAAGGTGTGACTGTCCCGAAACAAGAAACACTATGCTTTCATCGGTGAAC
TGCAGTTGTATTGATTTTTTCTGTTGATCATCTGGAGTAAAATAGGTACA
TGTTGAACAACGAAAACTCTCACCAGGTGCCATGAAGAACGGAGTCAAGT
GGAGACCAGCACGATCTGTATCCCGAAACTTTACTCTTGCTAGCGTTGCG
GCAGTGGCGGTGGCGTTCGGCATCCCAGGTAATTATCGCCATAATAATAA
CCACGCAACAATGCCAATCTCCGGATATGTTTCTACTCCCTGACTGGCCG
ACTGGCCGATACAATGTTGTTACTCGACCCTACAGGGAATCTGCTCCCAA
CCTGCGCGACGTCTGGAGGCCATCAACACGAGAACGAGAAACATCAACCG
GACGACGTTGGTGAGCTATTTTTATGCACGCGTTTCATCTGTGGAGATAA
ATGATGTGCTCTGATTGCTGAACATTTGAGGCATTCAAAGGAAACTAACT
CTTAACTCTCAGCGACCCCTCTGTGTCTTGTTCAGGATACGACGCCAGCT
ATAACGTCGACCGACGGAATATGGTCCAGGCTATAGCGGACTTGTATCAA
GCCGAATTGAAAAGACAAGTGAGTTCGCCTGTGTTAATACCTGGCTGGTC
GACGCCTAGAACGCCTGTGTATGCTGAGGCCGGGCGTTCCCCCACCTTTC
GCCTGAAACTTTCTGTGAAAAGAAGGTCTGTCGTCTGGAAATTCAAAACC
GGACTCCTCCCCCACCCCCCGCTTCGCGGGGAAGATTTTCAGGAAATATG
GACTCTACAACTCATTGCCCGTTGATTCAACATTAATCTTGGAGAATTAC
TCATTGTCTCGTCATGTGATACCGCGCGGAGTTTTGTCCGTGTATGTTCC
CACAATACACTAGATCCAGGCGTTGAAATACTTCATTGCTGCTAAAGTTG
AAGAACGCTAATGATCCGTGTAGCCTGTAGATCGGGTATTAATGGAAGGC
GTGTGGGAACACGGAGCTGCAAGAGAGCTTGTCGCCCTCGCCTCGCTCGC
CTCACCACCCCAGCAATGTTCTCGTTATCATTCTGTGATGATATCCTCCA
GCAACGACCCAGTCCACTATACGTGTAGACAGAGATATTTCTTAGATTAG
CTCACTGCACCATCCCCCATCTCCTACACAGCAAGTGTGAGCAGCAGCCA
AAACAAACAAACAGATACACTGTGGAAGGGTGTTCTGTGAGTCATCCTAC
GGTAGGGGGCGGGGTATTTGAGCCGCTTTGCTTGACAAAGGAGCCAGTTC
GAGGAGGGAATCGGGCATTTATGTCTTTTAATTTTTGCGTGTGTTGCCCC
CCCTTAGACAGGTATCCCATTTCGACTGTGCACAAACACATGCAATTGAC
ATGATTTTGACTCGCGTTATTAGTGTGCCACTTTTGCGAAGCGGTCTTCA
TTAAACAAATGATTCCCCCCCTACCGCAGGATGACTCCTGTCCTCTACGG
ACTCTAGTGGAAAATATCCCCTTCTATAGGGTACTCTCCACATCACCCCC
CCCTTTATCAGGCTCTTTGCTGTTTTGCAAGTGTCGTCTAGAGGTAACCG
ATTTCACCGGCTGGCGGTGAGGACGCCGACTCCTTTTTAAACCTTCCCTC
CTCTTGCGTGTGGGCCAACCACCTCCATCGTCTTACTAGAATTTTGTATG
GATATTTTGTACGTATTCCTGCTTAACTTGCAAATTTATTTTGGGCGCTG
GTCCAGAGCCGGTACACCGTGCGAAAATGTTCTCAATCCGGTACAGCTTT
TCCCCTAATTCACGGTGACACCAAATACAACAAGCTCCACCAGACTCTCA
CATGGCACACTCTCATACACCCACGGCAGCCATTCGTCGAAGAACCACTA
GGAAAAAACGCGTTTTGGCCTCTTACCACCGCCGCAAAGTTGGTAATTTC
CTGAGGGCACCACACTGTACCGGTTGTAGACCAAAAAAGCACCCGATGTA
ATGGATTGAGAATTTCTTTCCGAAAGCATGTCGACTGTAGACCACAAAGT
GTAACAGTTGTAGGCCAAACTGTACCGGTTGTAGATCAATTTGGCAATGG
GATCTTCCTACATGCTACACACCAACCCAGCCTACCGCTGAGCAGAATGT
CACTGTTTTCCACAAATGCTGGACGTTGCTGGCTCTAACGACCACATATT
TTTCTGGTCCTCCAGCTGGTGAAAGAACCCGACGACAAGAATCAGGATAC
ATGCCAGCATCGAGCGCACCCCGGAATATGTCTTGGTCATTTTTCCGATC
TGCAGGCAAATCACCCCTGTTCCGCCGAGATCGAACCCGGGTGTGTTGCA
GCTCGAAGTCGTTGCCCGCAAACGCTCGCAACACCTGATTTTATCTCTTA
AATTGACTTTGTGACACCCTCTTAAGTGTTTCCTCGTCGTACTCGTAATG
AAGCGTCAAAATACCTTCAACCAACTCCTCAATTGTGCCGCAGCCCTCCC
AAACTTGAGGGGCGCAATAAACACTTTTTTTTATATTAGGATATCGGGGC
TGTGTTGGCTAGAAGATGCACTTGACGTTTCACCCCGCTCCCCTTCCTGC
CAAATTCAACTTCCTCGGAGCGGCGGCCGCCCAGATGGCGCTAAGACCCA
ACGTTCTCCTGTACTCAAGCTCTTCGTTCATCTCACCCCACACTTTAGCT
GGATAGTTCGTGTTTACTACGTACCCAGGGTAAAGCGCACTGCTGACGCG
TTTGGGCAGCCCGACATCCTCAGGTGGAAGAGCCAATGCGTACCGCACGG
CCAAACCATAGCGGCTTTCCCTAGAGAGTTCTTCACGTTTGATGCGGGCC
GATGGGCTTGCTTGCAGGGTTTGCCAATGAGGTTACACGGCTCGCCATTG
GACTGCATGTGGGCTAGTGTAGGTGTGATGTGGGCATGGTGTGGGTGTGT
GTGTGCTCCCATGTCCCGAAAAATAGCGGCGGGTATTATACAAACACTGC
ATGTTCATTTCCACACCCCAAACACTGCATGTTCCCCGTTCGGAATCCTA
TATCTCCGATATGTAGGAAATAGTTGATACCCAGGGCTTTGAAACGGTAT
GCTTGGTGTTTGATTAATCCAACCTGATCCCCTAGACTTATGAGACAAAG
GGAGGAGTAGTACTGGTATAGGTAGGGCCCAGGACGCTGAAAAAATTATA
TGGAATCTGGAGAATAGTATGTATATCCTAGAGAGCAACTCGATATAATT
ATTGGATTAAATGTGCTTCCCCCCCTAGACCCCCGCCAAAACAACAATTT
TTTTTCTGTGGTCTAGCGTCTGTGATTCGAAATTCAAAATACGGACCTTG
TTACCTTAGAAGCAATGAGAAGATTAAAAATGCTGATTGTGGTGATGCGG
AGCTCTCGTCACCACGTGGACCACAATTTGAACGAGATATAGTATACTTT
TGTGATGCTTAAATCACGTTGTGGCTGATCCAGGAGGAGATGAGCTTGGA
AGATGCTATTAGGAGCGACAATGGACCGAAGGAGATATCGATATATTGTC
ATCAAGCACCCGAGGTTAAGATTGTTGACTTGGCGCAGGACCACCGCGGG
AATAACGAATGTCTGTAAGTAATTCCGCCGAGAAGCATCGTTTCGTCGAG
TATATCCGGCTTCGTTTCTTTCTCACTTAATGGCGAATTTTACGGGGAGA
TTAAAAGCATTCCCATTTTCTTTGAACGTGCCGGCTGGCGCTGAGTATTC
CATTTTCTAGTGATCAACCGAGAGTACTCTGCACGTTCTCCGTCCCTCGA
GAAAGATAAATAGCTCTACTTAACTCATTACGCAACGTTTACCAGTGCAA
GTTCCCCTGCCCGTTTGCGAATTGACTCCCCGCAGCATCCTCCACGTGAA
CGCACCTGATGTGTCGAGCAAGCTAATGTTGAAGTGCGATGGAAGCGTTA
GTGGGAGTGACTTTGGGTGGGGGGAGAACTGGTGAAATGGAGGTAGAAAA
TTGTGTGAGATAATTGGTCACCAAAGTAAAAGCACGTCGAAAAGGGCAAC
CGTAAGCTATCGGTTGAACCAGATGACAACGTCATGTCCTTCAAGGATGG
CTGATACGGGTCACACAATATACTTCTTCGTATGGTACGGGAACAACTAT
CATAGATTGGCGTTTATCTGGAGCACACGGATATCAGGTACAAGGTAACC
GCTTATTTCGATGACCACGGAAAAAGGCGAGTCTGTCGAACCTGGGAGAT
GAGCGCGAAGACTTGGAGCTTGCGTGTCAAGTACAGGCACCTAACTTTGT
CCAACAACTTCGAATGTATGCATGGTGTAGTTCGCTGGATAAATAGATCC
CCACACACATGGTAATCGCATGAAGATTGATGGCAGGATGACTTTTACAG
CACCTAACGTCTGCAGGTGATTGCATTGACGTGTCAAACGATTCCACGGG
AGAGTGTGCACCACTGCGACAGTAAGTACGCTGCACGGGGGGGCAAGGCA
CTAGTCTGGTCTACACTTGTGTGCAGGGCTGTAAATTTGGGTTCAGCTGG
TGCCTAATGTGTGATGGGCATGATGAAACTCTAGCATAACACGTATGGAT
GATATATTCAGGTCGAACCTGGAAAATGTCGATATGTGTCCGATGTACAC
TTCTTACTGCTGTCCTGGTCGTGTGTTTCCTCTCATGCGCCACTCGCGTT
GAAGGGAATAAAGGCAGAGTGCGTCGCAATCGCAGTCTGTAGGCCGTTGA
ACTGTTTCTGACTGTTGAGGTAAATTGCGCCATTTTCATTTTCAAGTCCC
AGCTCTATGTCTGTCTATTCATCCTAAATTAACCTATGAGGTACAAGGGT
CGCCAGTGGTGTCACAATCAATCAGAAAACAAGGTTGACCGCTCAGGGAG
CCTATACTGTAGCAAGCTAGAGAAGGGTGGGTACTGCGAATTGCGCCCTT
CTGGTATTAACTTTTTATCCAGGAATACCTCCTTCCAAACCAAAGGATTC
ACAGAGAAATGGTTCCCCTGCACCCTCTTGACATTTGCGATTGGGGGAAG
GGCTTTTAGGTTCGTACTTGGAATGGGGGCGGGGACTTGGGAGGAAAGGA
GTGGCGATCGGAGTGTATATGGTAGAACGGGGGGGCGTGGGGGAAGGCTT
ATTGGAGCTTTGACAGGAGTCTACGAAGAAGGGAAAGTGGGAGGGGGAGG
CCTCTTCTCCCCACATTGCTGAAAGTAGCGAATGTGTCCATACATGACCA
ACGCGTTGAAAATATGCGCTGTTCCAAACCTACCATTTTTATGGCAAGCA
GGGATATAAGTTGTGTGTGAAAGATCTCGGGAGGGGAGGACTTTGGTCCG
CAGCTGGGGTGGGGAACAAGGATTTGGGGGAGAACTCAGGTTGGAAAGGC
GGGGAAGTAATCGTAGATAGAGCGAACGCGGGGTGTGTGGAGTTAAACTG
GTGCTCTCACGGGAGCGGGAGCCCATGCAGGCGGAAGAGCGAGGGAGCGG
AGACATTTCCCCGATGTTGCCGAAACTAGGGAGTGTAGCCCACGCACGAC
AAACGCTTTGAGAAATATGCGCTATTTATGGCAATCAGGAACTGCTATTT
CTCAGCGAGGGGTGGAAAGGAGGGTTTTGCCCGTATTCAAGAGGTTATCT
AGGCACAGCATGGGATACTAGCGTGGAGTAATGATATTGCTTTGTTCATG
AGAAGTGGAGAACGTTCAATCATAGAATTTCATCTCGTTCCTGGCTGCTG
CTTGAGTTCTCTGGGCTACAATGAGTTTTTTTAGCCTCGCTGAACGTTAG
GCGCCAATATTCGAGAGTGCACATTGTTTGACAGCAAGCAGAATAGCAAT
TACCTGTTGTAAACGACAAGTTTGATTTATCAGACTTGAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig5467:598..6537+ >mRNA_H-paniculata_contig5467.12924.1 ID=mRNA_H-paniculata_contig5467.12924.1|Name=mRNA_H-paniculata_contig5467.12924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig5467:598..6537+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAACGGAGTCAAGTGGAGACCAGCACGATCTGTATCCCGAAACTT
TACTCTTGCTAGCGTTGCGGCAGTGGCGGTGGCGTTCGGCATCCCAGATG
AAGAACGGAGTCAAGTGGAGACCAGCACGATCTGTATCCCGAAACTTTAC
TCTTGCTAGCGTTGCGGCAGTGGCGGTGGCGTTCGGCATCCCAGGGAATC
TGCTCCCAACCTGCGCGACGTCTGGAGGCCATCAACACGAGAACGAGAAA
CATCAACCGGACGACGTTGGGAATCTGCTCCCAACCTGCGCGACGTCTGG
AGGCCATCAACACGAGAACGAGAAACATCAACCGGACGACGTTGGATACG
ACGCCAGCTATAACGTCGACCGACGGAATATGGTCCAGGCTATAGCGGAC
TTGTATCAAGCCGAATTGAAAAGACAAGATACGACGCCAGCTATAACGTC
GACCGACGGAATATGGTCCAGGCTATAGCGGACTTGTATCAAGCCGAATT
GAAAAGACAAGAGGAGATGAGCTTGGAAGATGCTATTAGGAGCGACAATG
GACCGAAGGAGATATCGATATATTGTCATCAAGCACCCGAGGTTAAGATT
GTTGACTTGGCGCAGGACCACCGCGGGAATAACGAATGTCTGAGGAGATG
AGCTTGGAAGATGCTATTAGGAGCGACAATGGACCGAAGGAGATATCGAT
ATATTGTCATCAAGCACCCGAGGTTAAGATTGTTGACTTGGCGCAGGACC
ACCGCGGGAATAACGAATGTCTCATCCTCCACGTGAACGCACCTGATGTG
TCGAGCAAGCTAATGTTGAAGTGCGATGGAAGCGTTAGTGGGAGTGACTT
TGGGTGGGGGGAGAACTGGTGACATCCTCCACGTGAACGCACCTGATGTG
TCGAGCAAGCTAATGTTGAAGTGCGATGGAAGCGTTAGTGGGAGTGACTT
TGGGTGGGGGGAGAACTGGTGA back to top
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