mRNA_H-paniculata_contig54629.12921.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54629.12921.1
Unique NamemRNA_H-paniculata_contig54629.12921.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54629.12921.1 vs. uniprot
Match: A0A6A4ZGC5_9STRA (DDE-1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGC5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.680e-5
Identity = 34/87 (39.08%), Postives = 43/87 (49.43%), Query Frame = 1 
Query:    1 WIADSGATVHTTPSRDNMLNY--CKIDGTTYLTDASGVQLPIEGYGKLTIVFKTPE---------CNYQLFLGKVAHVPELYYNLFS 228
            WI DSGA+   TP+RD   NY  C +     LT  +G QLP+ GYG L++               C  +L  G   H PEL +NLFS
Sbjct:  567 WIVDSGASASCTPNRDYFSNYVPCALS----LTVGNGAQLPVLGYGPLSLAVDMSSRDQADDIRPCALRLTFG--LHCPELQFNLFS 647
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BLAST of mRNA_H-paniculata_contig54629.12921.1 vs. uniprot
Match: A0A6H5KDA4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA4_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.200e-5
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    1 WIADSGATVHTTPSRDNMLNYCKIDGTTYLTDASGVQ-LPIEGYGKLTIVFKTPECNYQLFLGKVAHVPELYYNLFSL 231
            ++AD+GAT H  PS +   NY + D    L+ A+G Q   I GYG + +   +      L L +VAHVPEL YNL SL
Sbjct:   56 FVADTGATNHMFPSANAFENYHECDRR--LSVAAGKQAFAIVGYGDVRVTIGSRVGTTDLLLKRVAHVPELNYNLVSL 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54629.12921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6A4ZGC5_9STRA1.680e-539.08DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KDA4_9PHAE6.200e-542.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54629contigH-paniculata_contig54629:219..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930566.2683327-CDS-H-paniculata_contig54629:218..4491622930566.2683327-CDS-H-paniculata_contig54629:218..449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54629 219..449 +
1691481351.1111047-CDS-H-paniculata_contig54629:218..4491691481351.1111047-CDS-H-paniculata_contig54629:218..449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54629 219..449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54629.12921.1prot_H-paniculata_contig54629.12921.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54629 219..449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54629.12921.1

>prot_H-paniculata_contig54629.12921.1 ID=prot_H-paniculata_contig54629.12921.1|Name=mRNA_H-paniculata_contig54629.12921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
WIADSGATVHTTPSRDNMLNYCKIDGTTYLTDASGVQLPIEGYGKLTIVF
KTPECNYQLFLGKVAHVPELYYNLFSL
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mRNA from alignment at H-paniculata_contig54629:219..449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54629.12921.1 ID=mRNA_H-paniculata_contig54629.12921.1|Name=mRNA_H-paniculata_contig54629.12921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig54629:219..449+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTTCACGGGATAA
TATGCTCAACTATTGTAAAATTGACGGAACAACTTACTTGACTGATGCGT
CAGGTGTACAGCTACCCATCGAGGGGTATGGAAAGCTGACGATAGTTTTC
AAAACGCCAGAATGCAATTACCAGCTGTTTCTGGGGAAGGTTGCACACGT
ACCAGAACTATATTACAACCTCTTTTCCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig54629:219..449+

>mRNA_H-paniculata_contig54629.12921.1 ID=mRNA_H-paniculata_contig54629.12921.1|Name=mRNA_H-paniculata_contig54629.12921.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig54629:219..449+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAGCGGATTCGGGAGCAACAGTTCATACAACCCCTTCACGGGATAA
TATGCTCAACTATTGTAAAATTGACGGAACAACTTACTTGACTGATGCGT
CAGGTGTACAGCTACCCATCGAGGGGTATGGAAAGCTGACGATAGTTTTC
AAAACGCCAGAATGCAATTACCAGCTGTTTCTGGGGAAGGTTGCACACGT
ACCAGAACTATATTACAACCTCTTTTCCCTTTGGATAGCGGATTCGGGAG
CAACAGTTCATACAACCCCTTCACGGGATAATATGCTCAACTATTGTAAA
ATTGACGGAACAACTTACTTGACTGATGCGTCAGGTGTACAGCTACCCAT
CGAGGGGTATGGAAAGCTGACGATAGTTTTCAAAACGCCAGAATGCAATT
ACCAGCTGTTTCTGGGGAAGGTTGCACACGTACCAGAACTATATTACAAC
CTCTTTTCCCTT
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