mRNA_H-paniculata_contig5452.12909.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5452.12909.1
Unique NamemRNA_H-paniculata_contig5452.12909.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5KU04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU04_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 8.710e-13
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +NP SS+ S++IDVR+HF R+L K+G +SV ++ + +QH D LTKAL      DHR A MN
Sbjct:   48 QNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 108
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BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +NP SS+ S++IDVR+HF R+L K+G +SV +V + +QH D LTKAL       HR+A MN
Sbjct:   75 QNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKALCRVKLEYHRKALMN 135
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BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.090e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +NP SS+ S++IDVR+HF R+L K+G +SV ++ + +QH D LTKAL      DHR A MN
Sbjct:  308 QNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 368
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.350e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +NP SS+ S++IDVR+HF R+L K+G +SV ++ + +QH D LTKAL      DHR A MN
Sbjct: 1183 QNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 1243
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.360e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +NP SS+ S++IDVR+HF R+L K+G +SV ++ + +QH D LTKAL      DHR A MN
Sbjct: 1736 QNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMN 1796
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5KQX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX9_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.700e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            ENP SS+ S++IDVR+HF R+L K+G+++  +V + +QH D LTK L  +    HR+A MN
Sbjct:   46 ENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMN 106
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5KCC0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC0_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 5.050e-11
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            ENP SS+ S++IDVR+HF R+L K+G+++  +V + +QH D LTK L  +    HR+A MN
Sbjct:   43 ENPFSSARSKHIDVRFHFIRELFKSGKITEEYVPTGEQHADMLTKVLGREKLEYHRKALMN 103
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.180e-10
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            ENP SS+ S++IDVR+H+ R+L K+G+++  +V + +QH D LTK L  + F  HR+A MN
Sbjct:  200 ENPFSSARSKHIDVRFHYIRELFKSGKITAEYVPTGEQHADMLTKVLGREKFEYHRKALMN 260
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5JFA0_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA0_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.640e-10
Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 IFAENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            +  ENP SS+ S++IDVR+HF R+L K+G+++  +V + +QH D LTK L  +    HR+A MN
Sbjct:  115 LIIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGRKKLDYHRKALMN 178
[Close]
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Match: A0A6H5K3D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.280e-10
Identity = 29/61 (47.54%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   10 ENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKALPLQIFRDHRRASMN 192
            ENP SS+ S++IDVR+HF R+L K+G++   +V + +QH D LTK L  +    HR+A MN
Sbjct:  119 ENPFSSARSKHIDVRFHFIRELFKSGKIIAEYVPTGEQHADMLTKVLGRENLEYHRKALMN 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5452.12909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU04_9PHAE8.710e-1350.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVG7_9PHAE1.300e-1150.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.090e-1150.82Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKS3_9PHAE2.350e-1150.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.360e-1150.82Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQX9_9PHAE2.700e-1147.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCC0_9PHAE5.050e-1147.54Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE1.180e-1047.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA0_9PHAE1.640e-1045.31Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D9_9PHAE3.280e-1047.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5452contigH-paniculata_contig5452:179..382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930564.7976644-CDS-H-paniculata_contig5452:178..3821622930564.7976644-CDS-H-paniculata_contig5452:178..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5452 179..382 +
1691481350.4392185-CDS-H-paniculata_contig5452:178..3821691481350.4392185-CDS-H-paniculata_contig5452:178..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5452 179..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5452.12909.1prot_H-paniculata_contig5452.12909.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5452 179..382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5452.12909.1

>prot_H-paniculata_contig5452.12909.1 ID=prot_H-paniculata_contig5452.12909.1|Name=mRNA_H-paniculata_contig5452.12909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
IFAENPRSSSGSRNIDVRYHFNRDLMKTGEVSVHHVDSKDQHTDNLTKAL
PLQIFRDHRRASMNWCN*
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mRNA from alignment at H-paniculata_contig5452:179..382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5452.12909.1 ID=mRNA_H-paniculata_contig5452.12909.1|Name=mRNA_H-paniculata_contig5452.12909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig5452:179..382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTTGCTGAAAACCCGCGGAGCTCCAGTGGGAGTAGAAACATTGATGT
AAGATACCATTTCAATCGTGATCTGATGAAGACCGGAGAGGTGTCAGTGC
ACCATGTCGATTCAAAAGACCAGCACACTGATAACCTTACCAAAGCTCTT
CCTTTGCAGATTTTCAGGGATCACAGAAGAGCTTCGATGAATTGGTGCAA
CTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5452:179..382+

>mRNA_H-paniculata_contig5452.12909.1 ID=mRNA_H-paniculata_contig5452.12909.1|Name=mRNA_H-paniculata_contig5452.12909.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig5452:179..382+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTTGCTGAAAACCCGCGGAGCTCCAGTGGGAGTAGAAACATTGATGT
AAGATACCATTTCAATCGTGATCTGATGAAGACCGGAGAGGTGTCAGTGC
ACCATGTCGATTCAAAAGACCAGCACACTGATAACCTTACCAAAGCTCTT
CCTTTGCAGATTTTCAGGGATCACAGAAGAGCTTCGATGAATTGGTGCAA
CTGAATCTTTGCTGAAAACCCGCGGAGCTCCAGTGGGAGTAGAAACATTG
ATGTAAGATACCATTTCAATCGTGATCTGATGAAGACCGGAGAGGTGTCA
GTGCACCATGTCGATTCAAAAGACCAGCACACTGATAACCTTACCAAAGC
TCTTCCTTTGCAGATTTTCAGGGATCACAGAAGAGCTTCGATGAATTGGT
GCAACTGA
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