mRNA_H-paniculata_contig12017.1290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12017.1290.1
Unique NamemRNA_H-paniculata_contig12017.1290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12017.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12017contigH-paniculata_contig12017:1482..2037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size388
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12017.1290.1prot_H-paniculata_contig12017.1290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12017 1505..2029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.7453778-UTR-H-paniculata_contig12017:1481..15041622928917.7453778-UTR-H-paniculata_contig12017:1481..1504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12017 1482..1504 -
1691480667.2305775-UTR-H-paniculata_contig12017:1481..15041691480667.2305775-UTR-H-paniculata_contig12017:1481..1504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12017 1482..1504 -
1622928917.788286-UTR-H-paniculata_contig12017:2029..20371622928917.788286-UTR-H-paniculata_contig12017:2029..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12017 2030..2037 -
1691480667.2648122-UTR-H-paniculata_contig12017:2029..20371691480667.2648122-UTR-H-paniculata_contig12017:2029..2037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12017 2030..2037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.7644773-CDS-H-paniculata_contig12017:1504..17131622928917.7644773-CDS-H-paniculata_contig12017:1504..1713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12017 1505..1713 -
1691480667.2412562-CDS-H-paniculata_contig12017:1504..17131691480667.2412562-CDS-H-paniculata_contig12017:1504..1713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12017 1505..1713 -
1622928917.7766325-CDS-H-paniculata_contig12017:1881..20291622928917.7766325-CDS-H-paniculata_contig12017:1881..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12017 1882..2029 -
1691480667.2503393-CDS-H-paniculata_contig12017:1881..20291691480667.2503393-CDS-H-paniculata_contig12017:1881..2029Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12017 1882..2029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12017.1290.1

>prot_H-paniculata_contig12017.1290.1 ID=prot_H-paniculata_contig12017.1290.1|Name=mRNA_H-paniculata_contig12017.1290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MVDHGIPREEIELNKQLTFYNDMFGWARVATEALTHHAPPDILYGPSPAD
YQRVPELCDGPVVNAVHHMLHLALSVHTTHQIDHMLSSDYVSSLNWYERP
ELLPRAGHDDDSSDDEDD*
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mRNA from alignment at H-paniculata_contig12017:1482..2037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12017.1290.1 ID=mRNA_H-paniculata_contig12017.1290.1|Name=mRNA_H-paniculata_contig12017.1290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=556bp|location=Sequence derived from alignment at H-paniculata_contig12017:1482..2037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACACAGCGATGGTAGATCATGGCATCCCTCGAGAGGAGATTGAGCTGAAC
AAGCAGCTGACCTTTTACAATGACATGTTCGGCTGGGCGAGGGTAGCAAC
CGAGGCTCTCACCCATCATGCACCGCCCGACATCCTTTACGGCCCGTCTC
CCGCAGGTGTGCAGAATGAACGGAAGGGTGGACTACCGGACTTGCAACTC
AATTGCTCCTCCCTGCCCAAAAGCACTTGGTATGTTCTTCGGTCATTTGT
CGTGCTCACTACGCGTCATCCCCCTACGCCGCTTTACGGTACCATGTGTA
ATTTTCGGTGCGTTATTTTTGTAGATTATCAGAGGGTGCCTGAGCTGTGC
GACGGGCCGGTGGTGAACGCTGTTCACCACATGCTGCACTTGGCGCTGAG
CGTGCACACCACGCATCAAATCGACCATATGTTGAGCAGTGACTACGTGA
GCAGCTTGAATTGGTACGAGCGGCCAGAACTCCTCCCAAGAGCGGGTCAT
GACGATGACAGCAGCGACGATGAGGATGACTAGTGACGCTCAGAGTAAGA
AAGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig12017:1482..2037-

>mRNA_H-paniculata_contig12017.1290.1 ID=mRNA_H-paniculata_contig12017.1290.1|Name=mRNA_H-paniculata_contig12017.1290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig12017:1482..2037- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGATCATGGCATCCCTCGAGAGGAGATTGAGCTGAACAAGCAGCT
GACCTTTTACAATGACATGTTCGGCTGGGCGAGGGTAGCAACCGAGGCTC
TCACCCATCATGCACCGCCCGACATCCTTTACGGCCCGTCTCCCGCAGAT
GGTAGATCATGGCATCCCTCGAGAGGAGATTGAGCTGAACAAGCAGCTGA
CCTTTTACAATGACATGTTCGGCTGGGCGAGGGTAGCAACCGAGGCTCTC
ACCCATCATGCACCGCCCGACATCCTTTACGGCCCGTCTCCCGCAGATTA
TCAGAGGGTGCCTGAGCTGTGCGACGGGCCGGTGGTGAACGCTGTTCACC
ACATGCTGCACTTGGCGCTGAGCGTGCACACCACGCATCAAATCGACCAT
ATGTTGAGCAGTGACTACGTGAGCAGCTTGAATTGGTACGAGCGGCCAGA
ACTCCTCCCAAGAGCGGGTCATGACGATGACAGCAGCGACGATGAGGATG
ACTAGATTATCAGAGGGTGCCTGAGCTGTGCGACGGGCCGGTGGTGAACG
CTGTTCACCACATGCTGCACTTGGCGCTGAGCGTGCACACCACGCATCAA
ATCGACCATATGTTGAGCAGTGACTACGTGAGCAGCTTGAATTGGTACGA
GCGGCCAGAACTCCTCCCAAGAGCGGGTCATGACGATGACAGCAGCGACG
ATGAGGATGACTAG
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