mRNA_H-paniculata_contig54444.12900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54444.12900.1
Unique NamemRNA_H-paniculata_contig54444.12900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.880e-14
Identity = 36/78 (46.15%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:   97 TTFFLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGMETC 330
            T   +TLYVD L+ +G +  ++E +  +LM  F+ S +G+VSLVLGM+V+RD E GTLTI+  +YT+++++++GME C
Sbjct:  234 TIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEEC 311
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BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 9.980e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGMETC 330
            +LTLYVD L+  G++   +  +  +L + FK ++MG+V LVLGME+ RDR  G LTIS E YTK+++ ++GM  C
Sbjct:  762 YLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSEC 836
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BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.360e-13
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGMETC 330
            +LTLYVD L+  G++   +  +  +L + FK ++MG+V LVLGME+ RDR  GTLTIS E Y+K+++ ++GM  C
Sbjct:  651 YLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSEC 725
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-13
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGMETC 330
            +LTLYVD L+   ++   +  +  +L + FK ++MG+V LVLGME+ RDR  GTLTIS E YTK+++ ++GM  C
Sbjct: 1008 YLTLYVDDLLLASNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYTKSILERFGMSEC 1082
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.290e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            +LTLYVD L+  G+D   +  +  +L + FK +++G+ SLVLGME+ RDREA TLTIS E Y K+++ ++GM
Sbjct:  114 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGM 185
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.660e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            +LTLYVD L+  G+D   +  +  +L + FK +++G+ SLVLGME+ RDREA TLTIS E Y K+++ ++GM
Sbjct:  500 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGM 571
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.900e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            +LTLYVD L+  G+D   +  +  +L + FK +++G+ SLVLGME+ RDREA TLTIS E Y K+++ ++GM
Sbjct: 1508 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGM 1579
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.700e-12
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            +LTLYVD L+  G+D   +  +  +L + FK +++G+ SLVLGME+ RDREA TLTIS E Y K+++ ++G+
Sbjct: 1343 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGI 1414
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.750e-12
Identity = 34/72 (47.22%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            +LTLYVD L+  G+D   +  +  +L + FK +++G+ SLVL ME+ RDREA TLTIS E Y K+++ ++GM
Sbjct:  674 YLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGM 745
[Close]
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 3.750e-11
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:  106 FLTLYVDGLIFLGSDKGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKAMVSKYGM 321
            FLTLYVD L+  G++  ++  +  +L +  K ++MG+V LVLGME+ RDR  GTLT S E Y+K+++ ++GM
Sbjct:  950 FLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGM 1021
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54444.12900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J6N1_9PHAE6.880e-1446.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXM1_9PHAE9.980e-1446.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.360e-1346.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE1.390e-1346.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE4.290e-1348.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMG0_9PHAE4.660e-1348.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE4.900e-1348.61Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.700e-1247.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE5.750e-1247.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL30_9PHAE3.750e-1145.83Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54444contigH-paniculata_contig54444:138..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue5.9e-07
Seed eggNOG ortholog4558.Sb07g003556.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930563.6053965-CDS-H-paniculata_contig54444:137..4731622930563.6053965-CDS-H-paniculata_contig54444:137..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54444 138..473 +
1691481349.9872139-CDS-H-paniculata_contig54444:137..4731691481349.9872139-CDS-H-paniculata_contig54444:137..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54444 138..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54444.12900.1prot_H-paniculata_contig54444.12900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54444 138..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54444.12900.1

>prot_H-paniculata_contig54444.12900.1 ID=prot_H-paniculata_contig54444.12900.1|Name=mRNA_H-paniculata_contig54444.12900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
ISHESFFTPVHLGEVNQSLYIVTSRETRIKPETTFFLTLYVDGLIFLGSD
KGLLEKLNLQLMRCFKTSNMGDVSLVLGMEVSRDREAGTLTISLENYTKA
MVSKYGMETCNL
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mRNA from alignment at H-paniculata_contig54444:138..473+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54444.12900.1 ID=mRNA_H-paniculata_contig54444.12900.1|Name=mRNA_H-paniculata_contig54444.12900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig54444:138..473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCTCACGAAAGCTTCTTCACCCCGGTGCATCTTGGCGAAGTTAATCA
GAGTCTCTACATCGTCACCAGCAGGGAAACTCGGATCAAACCGGAAACTA
CGTTCTTTCTCACCCTTTATGTGGACGGCTTAATTTTTCTCGGCTCGGAT
AAGGGACTCCTTGAAAAACTCAACCTACAATTGATGAGGTGTTTCAAGAC
GTCGAACATGGGCGACGTATCGCTCGTGCTGGGCATGGAGGTGTCTAGGG
ACCGCGAGGCAGGGACGCTGACCATCAGCCTGGAGAACTACACCAAGGCG
ATGGTGTCCAAGTACGGTATGGAGACGTGCAATCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig54444:138..473+

>mRNA_H-paniculata_contig54444.12900.1 ID=mRNA_H-paniculata_contig54444.12900.1|Name=mRNA_H-paniculata_contig54444.12900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig54444:138..473+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCTCACGAAAGCTTCTTCACCCCGGTGCATCTTGGCGAAGTTAATCA
GAGTCTCTACATCGTCACCAGCAGGGAAACTCGGATCAAACCGGAAACTA
CGTTCTTTCTCACCCTTTATGTGGACGGCTTAATTTTTCTCGGCTCGGAT
AAGGGACTCCTTGAAAAACTCAACCTACAATTGATGAGGTGTTTCAAGAC
GTCGAACATGGGCGACGTATCGCTCGTGCTGGGCATGGAGGTGTCTAGGG
ACCGCGAGGCAGGGACGCTGACCATCAGCCTGGAGAACTACACCAAGGCG
ATGGTGTCCAAGTACGGTATGGAGACGTGCAATCTGATCTCTCACGAAAG
CTTCTTCACCCCGGTGCATCTTGGCGAAGTTAATCAGAGTCTCTACATCG
TCACCAGCAGGGAAACTCGGATCAAACCGGAAACTACGTTCTTTCTCACC
CTTTATGTGGACGGCTTAATTTTTCTCGGCTCGGATAAGGGACTCCTTGA
AAAACTCAACCTACAATTGATGAGGTGTTTCAAGACGTCGAACATGGGCG
ACGTATCGCTCGTGCTGGGCATGGAGGTGTCTAGGGACCGCGAGGCAGGG
ACGCTGACCATCAGCCTGGAGAACTACACCAAGGCGATGGTGTCCAAGTA
CGGTATGGAGACGTGCAATCTG
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