mRNA_H-paniculata_contig54423.12898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54423.12898.1
Unique NamemRNA_H-paniculata_contig54423.12898.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.540e-39
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+FFI+ELV   K
Sbjct:   70 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK 175
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.180e-37
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+FFI+ELV   K
Sbjct:  295 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK 400
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.880e-36
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+FFI+ELV   K
Sbjct:  516 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK 621
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.040e-36
Identity = 69/106 (65.09%), Postives = 82/106 (77.36%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+FFI+ELV   K
Sbjct:  855 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK 960
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.380e-33
Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKSM SYI+M+S AP S K GLQ LTA ST+E ELVA+AL MK  +FC+NMMKELG  + F S P++IDST+ L+V GN+T+S   KH+ALR+F+I+++VK  +
Sbjct:  636 DNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGR 741
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BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.440e-33
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRY 285
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+
Sbjct:   41 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRF 135
[Close]
BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.470e-33
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DN KSM SYI+M+S APVSFK GLQ LTA ST+E ELVA AL MK ++FC+NMMKELG  + F S P+YI+ T+ LHV GN+T+S   KH+ALR+F+I+E+VK  +
Sbjct:  549 DNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYIN-TATLHVIGNQTFSGRTKHVALRFFYIREIVKEGR 653
[Close]
BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.050e-33
Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS  SY+ +L+NAP+SF+ GLQGLTA STME ELVA+AL M  +VF SNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR+FFI+ELV   K
Sbjct: 1524 DNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGK 1629
[Close]
BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.770e-33
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRAK 318
            DNGKS   Y+ ML NAPVSFK G+QG TA STME EL+A+AL MK +VFCSN++ ELG    F  VP+Y D+T+ LH  GNR++SS  KHIALR+F+I+EL+   +
Sbjct: 1025 DNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGR 1130
[Close]
BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.520e-33
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    1 DNGKSMYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMKELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALR 282
            DNGKS  SY+ ML+NAP+SF+ GLQGLTA STME ELVA+AL MK +VFCSNMM ELG    F  +PVY D+T+ LH  GNR++SS  KHIALR
Sbjct:  172 DNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALR 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54423.12898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE2.540e-3965.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE3.180e-3765.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.880e-3665.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE4.040e-3665.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE1.380e-3359.43Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCX7_9PHAE1.440e-3365.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE1.470e-3361.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJH6_9PHAE2.050e-3362.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE3.770e-3358.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNV2_9PHAE4.520e-3365.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54423contigH-paniculata_contig54423:37..372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.5
Seed ortholog evalue5.7e-07
Seed eggNOG ortholog37727.XP_002147152.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs20FR9@147545,38DPC@33154,3NUZ7@4751,3QNZW@4890,3SBAR@5042,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size321
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930563.2895927-UTR-H-paniculata_contig54423:36..511622930563.2895927-UTR-H-paniculata_contig54423:36..51Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54423 37..51 +
1691481349.8658004-UTR-H-paniculata_contig54423:36..511691481349.8658004-UTR-H-paniculata_contig54423:36..51Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54423 37..51 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930563.3147614-CDS-H-paniculata_contig54423:51..3721622930563.3147614-CDS-H-paniculata_contig54423:51..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54423 52..372 +
1691481349.8765745-CDS-H-paniculata_contig54423:51..3721691481349.8765745-CDS-H-paniculata_contig54423:51..372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54423 52..372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54423.12898.1prot_H-paniculata_contig54423.12898.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54423 52..372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54423.12898.1

>prot_H-paniculata_contig54423.12898.1 ID=prot_H-paniculata_contig54423.12898.1|Name=mRNA_H-paniculata_contig54423.12898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MYSYIVMLSNAPVSFKVGLQGLTAQSTMEVELVATALTMKGSVFCSNMMK
ELGCSTRFDSVPVYIDSTSALHVAGNRTYSSCVKHIALRYFFIQELVKRA
KSASTT*
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mRNA from alignment at H-paniculata_contig54423:37..372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54423.12898.1 ID=mRNA_H-paniculata_contig54423.12898.1|Name=mRNA_H-paniculata_contig54423.12898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig54423:37..372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAACGGCAAGTCGATGTATTCGTACATTGTCATGCTTTCGAACGCTCC
GGTAAGCTTCAAGGTGGGCCTGCAAGGGCTGACAGCGCAGTCCACGATGG
AGGTCGAACTCGTGGCCACAGCGCTAACGATGAAGGGGTCAGTGTTTTGC
TCAAACATGATGAAGGAATTGGGATGCAGCACGCGCTTCGATAGCGTACC
AGTGTACATCGATAGCACCTCGGCACTGCACGTTGCAGGCAACCGGACCT
ACAGCTCGTGTGTGAAACACATAGCACTACGGTACTTCTTCATTCAGGAG
CTGGTCAAGAGGGCAAAATCAGCATCCACTACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig54423:37..372+

>mRNA_H-paniculata_contig54423.12898.1 ID=mRNA_H-paniculata_contig54423.12898.1|Name=mRNA_H-paniculata_contig54423.12898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig54423:37..372+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATTCGTACATTGTCATGCTTTCGAACGCTCCGGTAAGCTTCAAGGT
GGGCCTGCAAGGGCTGACAGCGCAGTCCACGATGGAGGTCGAACTCGTGG
CCACAGCGCTAACGATGAAGGGGTCAGTGTTTTGCTCAAACATGATGAAG
GAATTGGGATGCAGCACGCGCTTCGATAGCGTACCAGTGTACATCGATAG
CACCTCGGCACTGCACGTTGCAGGCAACCGGACCTACAGCTCGTGTGTGA
AACACATAGCACTACGGTACTTCTTCATTCAGGAGCTGGTCAAGAGGGCA
AAATCAGCATCCACTACGTGAATGTATTCGTACATTGTCATGCTTTCGAA
CGCTCCGGTAAGCTTCAAGGTGGGCCTGCAAGGGCTGACAGCGCAGTCCA
CGATGGAGGTCGAACTCGTGGCCACAGCGCTAACGATGAAGGGGTCAGTG
TTTTGCTCAAACATGATGAAGGAATTGGGATGCAGCACGCGCTTCGATAG
CGTACCAGTGTACATCGATAGCACCTCGGCACTGCACGTTGCAGGCAACC
GGACCTACAGCTCGTGTGTGAAACACATAGCACTACGGTACTTCTTCATT
CAGGAGCTGGTCAAGAGGGCAAAATCAGCATCCACTACGTGA
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