mRNA_H-paniculata_contig54387.12889.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A1E1W1A6_PECGO (gag_pre-integrs domain-containing protein (Fragment) n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1W1A6_PECGO) HSP 1 Score: 53.9 bits (128), Expect = 1.440e-6 Identity = 30/82 (36.59%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQAVVKQ 264
W+ DSGA AHM + ++ +++ C+ VTVAN ETLP G G + ++++ G + +LS V +P L TNL S+ + ++
Sbjct: 28 WLVDSGATAHMCNNVGIMDNFKVCNKNNVTVANNETLPCIGIGDVRFQLRN-GYV---TLSDVLCIPDLSTNLISVSKLCEK 105
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 53.5 bits (127), Expect = 3.060e-6 Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRG-EIHKFSLSRVAHVPGLDTNLFSLQAVVKQ 264
W+ DSGA AHMT +E ++T+A+G+ I G G ++ D E+ + +S V +VPGL TNL S++ + ++
Sbjct: 275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQK 357
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A6G0W5N4_9STRA (gag_pre-integrs domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W5N4_9STRA) HSP 1 Score: 52.0 bits (123), Expect = 1.030e-5 Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQAVVKQG 267
W+ DSGA H N F + V ANGE +PIEG G +++ M I K +L V ++P + NLFSL V ++G
Sbjct: 325 WILDSGACDHYC-KNAAWFTNLRPHDGAVRAANGEDMPIEGCGTVVLEMNTTAGIVKVTLDDVWYIPTIQFNLFSLPRVTERG 406
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A2N9IE26_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IE26_FAGSY) HSP 1 Score: 52.0 bits (123), Expect = 1.080e-5 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFD-YETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQAVVK 261
W++D+GA H TP + D + N FVTV NG++LPI V + R H F+L +V HVP + ++L S+ K
Sbjct: 372 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITH----TVNSQLRASSHLFNLRKVLHVPSMSSSLLSVYRFCK 449
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A2N9G1Z9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G1Z9_FAGSY) HSP 1 Score: 50.8 bits (120), Expect = 2.690e-5 Identity = 29/82 (35.37%), Postives = 42/82 (51.22%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFD-YETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQAVVK 261
W++D+GA H TP + D + N FVTV NG++LPI G + H F L +V HVP + ++L S+ K
Sbjct: 408 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSVYRFCK 485
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A2N9EUP4_FAGSY (Integrase catalytic domain-containing protein n=5 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUP4_FAGSY) HSP 1 Score: 50.8 bits (120), Expect = 2.730e-5 Identity = 29/82 (35.37%), Postives = 42/82 (51.22%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFD-YETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQAVVK 261
W++D+GA H TP + D + N FVTV NG++LPI G + H F L +V HVP + ++L S+ K
Sbjct: 366 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSVYRFCK 443
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A8J2P7A8_9HEXA (Hypothetical protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P7A8_9HEXA) HSP 1 Score: 49.7 bits (117), Expect = 6.380e-5 Identity = 27/78 (34.62%), Postives = 39/78 (50.00%), Query Frame = 1
Query: 19 WVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQA 252
W D+GA H+TP E YE + + A G + G+G + V G++ KF L+ V HVP + NL S+ A
Sbjct: 214 WWIDNGATKHITPHREWFQTYEPFPSNYFVKAAGSRVAAVGHGSIEVASFVNGQLIKFDLTDVWHVPSISKNLVSVLA 291
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A7J0D6S2_9ERIC (Uncharacterized protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0D6S2_9ERIC) HSP 1 Score: 49.7 bits (117), Expect = 6.460e-5 Identity = 31/78 (39.74%), Postives = 38/78 (48.72%), Query Frame = 1
Query: 19 WVADSGAMAHMTPS-NELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQ 249
W+ DSGA H+T N L + VTV NG TLPI G + H F L V HVPG+ +NL S+Q
Sbjct: 226 WLLDSGATNHITGDLNNLHLHHPYQGTDQVTVGNGNTLPIHNTGNGPLPTPS----HSFQLRNVLHVPGIQSNLLSVQ 299
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A7J0D6V2_9ERIC (Uncharacterized protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0D6V2_9ERIC) HSP 1 Score: 49.7 bits (117), Expect = 6.720e-5 Identity = 31/78 (39.74%), Postives = 38/78 (48.72%), Query Frame = 1
Query: 19 WVADSGAMAHMTPS-NELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGEIHKFSLSRVAHVPGLDTNLFSLQ 249
W+ DSGA H+T N L + VTV NG TLPI G + H F L V HVPG+ +NL S+Q
Sbjct: 159 WLLDSGATNHITGDLNNLHLHHPYQGTDQVTVGNGNTLPIHNTGNGPLPTPS----HSFQLRNVLHVPGIQSNLLSVQ 232
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 9.570e-5 Identity = 31/93 (33.33%), Postives = 46/93 (49.46%), Query Frame = 1
Query: 10 KEFWVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQMLVRMKDRGE---IHKFSLSRVA-------HVPGLDTNLFSLQAVV 258
+ W+ DSGA TP E Y+ CS L +TV +G TLP++GYG + + + +G I S + A H P L NL S++ +
Sbjct: 493 RSHWIVDSGATCSCTPHIEYFTSYQPCS-LSITVGDGATLPVKGYGPLSLNVTIQGNPLAIPPTSTTYAAITFSFGLHCPHLAFNLLSVRHAI 584 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54387.12889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54387.12889.1 >prot_H-paniculata_contig54387.12889.1 ID=prot_H-paniculata_contig54387.12889.1|Name=mRNA_H-paniculata_contig54387.12889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp DGCKEFWVADSGAMAHMTPSNELVFDYETCSNLFVTVANGETLPIEGYGQback to top mRNA from alignment at H-paniculata_contig54387:167..433- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig54387.12889.1 ID=mRNA_H-paniculata_contig54387.12889.1|Name=mRNA_H-paniculata_contig54387.12889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig54387:167..433- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig54387:167..433- >mRNA_H-paniculata_contig54387.12889.1 ID=mRNA_H-paniculata_contig54387.12889.1|Name=mRNA_H-paniculata_contig54387.12889.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig54387:167..433- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |